Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 0.0e+00 1102.4 546 100.0
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 3.0e-275 951.4 544 86.2
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 7.3e-274 946.8 546 83.7
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 9.2e-269 929.9 546 82.2
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 6.0e-268 927.2 546 82.2
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.1e-266 922.9 553 81.2
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 9.5e-266 919.8 553 81.7
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 7.5e-263 910.2 560 80.2
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 5.4e-245 850.9 520 79.2
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 5.1e-243 844.3 534 77.3
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 7.3e-242 840.5 546 74.7
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 2.0e-239 832.4 525 76.6
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 2.2e-238 828.9 546 72.9
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 1.9e-237 825.9 540 74.8
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 1.5e-234 816.2 546 72.7
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 3.3e-234 815.1 546 73.4
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 4.3e-234 814.7 504 76.8
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 2.4e-232 808.9 516 74.4
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 1.1e-229 800.0 530 74.7
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 5.5e-229 797.7 540 72.8
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 9.3e-229 797.0 516 75.2
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 2.7e-228 795.4 546 70.5
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 4.6e-228 794.7 519 75.3
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 3.0e-227 792.0 545 69.5
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 5.1e-227 791.2 543 70.7
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 1.1e-226 790.0 544 69.7
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 4.3e-226 788.1 546 69.6
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 9.6e-226 786.9 518 73.9
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 9.6e-226 786.9 540 71.7
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 2.1e-225 785.8 546 70.3
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 2.4e-224 782.3 518 72.4
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 2.4e-224 782.3 526 71.1
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 4.0e-224 781.6 530 72.3
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 1.2e-223 780.0 540 70.7
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 4.5e-223 778.1 539 70.1
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 1.0e-222 776.9 539 69.8
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 1.3e-222 776.5 543 67.6
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 1.3e-222 776.5 546 67.6
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 2.2e-222 775.8 540 70.4
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 6.5e-222 774.2 542 67.5
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 8.4e-222 773.9 523 72.8
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 1.1e-221 773.5 546 69.4
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 1.6e-220 769.6 540 69.3
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 1.6e-220 769.6 544 68.8
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 6.0e-220 767.7 519 71.1
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 7.9e-220 767.3 543 68.3
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 1.0e-219 766.9 543 68.7
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 1.8e-219 766.1 540 69.8
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 3.9e-219 765.0 540 69.4
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 5.1e-219 764.6 516 70.2
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 8.7e-219 763.8 540 69.4
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 1.1e-218 763.5 541 69.1
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 1.1e-218 763.5 520 70.6
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 2.1e-217 759.2 544 67.6
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 2.8e-217 758.8 540 68.1
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 8.2e-217 757.3 503 72.8
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 1.2e-215 753.4 487 73.5
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 4.5e-215 751.5 558 66.8
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 2.2e-214 749.2 527 70.8
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 6.5e-214 747.7 530 69.8
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 1.1e-213 746.9 502 71.1
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 5.5e-213 744.6 530 69.6
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 5.5e-213 744.6 530 69.2
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 2.1e-212 742.7 548 65.9
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 1.0e-211 740.3 545 68.1
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 2.8e-209 732.3 502 69.3
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 3.4e-207 725.3 509 67.8
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 7.7e-207 724.2 546 65.2
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 1.9e-205 719.5 508 67.1
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.9e-205 719.5 533 66.6
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 5.5e-205 718.0 509 68.0
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 1.2e-204 716.8 506 66.8
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 1.6e-204 716.5 491 70.9
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 2.6e-202 709.1 505 67.1
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 4.4e-202 708.4 464 74.1
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 2.2e-201 706.1 506 66.8
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 1.4e-200 703.4 526 64.8
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 1.4e-200 703.4 528 64.2
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 5.3e-200 701.4 506 66.2
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 2.0e-199 699.5 464 70.5
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 2.6e-199 699.1 528 64.0
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 7.7e-199 697.6 510 66.5
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 2.1e-196 689.5 425 78.8
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 2.7e-196 689.1 476 69.3
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 1.4e-195 686.8 486 67.1
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 8.2e-193 677.6 500 64.8
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 8.5e-190 667.5 497 64.6
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 3.3e-186 655.6 551 59.9
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 2.0e-183 646.4 614 54.9
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 1.6e-175 620.2 506 61.3
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 5.0e-174 615.1 494 60.9
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 4.2e-173 612.1 422 71.3
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 4.4e-170 602.1 427 67.0
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 1.8e-168 596.7 425 69.4
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 1.7e-166 590.1 379 75.7
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 8.6e-166 587.8 531 54.4
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 2.8e-164 582.8 381 72.2
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 3.4e-162 575.9 391 70.1
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 1.7e-161 573.5 560 52.1
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 1.7e-161 573.5 560 52.1
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.4e-160 570.5 480 64.4
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 1.5e-157 560.5 479 56.4
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 3.4e-154 549.3 433 66.3
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 1.4e-152 543.9 347 75.5
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 2.7e-151 539.7 440 60.2
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 9.5e-149 531.2 381 68.5
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 4.6e-143 512.3 389 65.3
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 5.6e-141 505.4 521 53.4
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 2.2e-137 493.4 532 53.6
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 6.2e-132 475.3 526 49.6
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 4.5e-122 442.6 285 73.7
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 6.7e-86 322.4 468 39.3
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 2.6e-82 310.5 239 66.5
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.6e-74 284.6 235 60.0
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 7.7e-66 255.8 189 66.1
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 4.8e-60 236.5 201 59.2
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 1.4e-54 218.4 138 74.6
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 2.2e-52 211.1 160 64.4
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 1.6e-47 194.9 132 67.4
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 3.6e-47 193.7 125 67.2
Psat4g010400 Pisum sativum HOM05D005919 ORTHO05D007176 7.5e-45 186.0 111 73.9
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 8.3e-44 182.6 157 57.3
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 1.9e-40 171.4 496 28.8
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 3.0e-33 147.5 90 72.2
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 1.7e-28 131.7 108 56.5
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 1.7e-28 131.7 108 56.5
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 1.7e-28 131.7 108 56.5
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 2.9e-28 131.0 133 55.6
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 3.7e-28 130.6 87 71.3
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 4.4e-21 107.1 75 64.0
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 2.9e-20 104.4 74 64.9
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 1.4e-11 75.5 298 27.5
Psat4g048040 Pisum sativum HOM05D005919 ORTHO05D007176 2.1e-10 71.6 42 71.4
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 3.6e-07 60.8 216 31.0
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 1.1e-06 59.3 220 30.0
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 1.8e-06 58.5 362 24.3
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 1.8e-06 58.5 362 24.3
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 1.8e-06 58.5 362 24.3
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 3.1e-06 57.8 215 27.9
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 4.0e-06 57.4 272 25.4
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 4.0e-06 57.4 193 29.0
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 4.0e-06 57.4 383 23.8
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 9.0e-06 56.2 167 28.1


User provided reference genes

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