Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G097300 Prunus persica HOM05D005733 ORTHO05D007442 1.4e-95 352.8 170 100.0
MD16G1262600 Malus domestica HOM05D005733 ORTHO05D007442 1.1e-87 326.6 170 91.2
RcHm_v2.0_Chr4g0404931 Rosa chinensis HOM05D005733 ORTHO05D007442 4.8e-83 311.2 171 87.7
TWI63G0727 Tripterygium wilfordii HOM05D005733 ORTHO05D007442 8.5e-80 300.4 168 82.1
FvH4_4g23510 Fragaria vesca HOM05D005733 ORTHO05D007442 2.5e-79 298.9 171 84.8
CANSAT11G0464 Cannabis sativa HOM05D005733 ORTHO05D007442 5.5e-79 297.7 169 82.2
Cfa013546 Carpinus fangiana HOM05D005733 ORTHO05D007442 7.2e-79 297.4 170 81.8
CiPaw.07G186800 Carya illinoinensis HOM05D005733 ORTHO05D007442 9.4e-79 297.0 170 81.2
GSVIVG01023749001 Vitis vinifera HOM05D005733 ORTHO05D007442 1.6e-78 296.2 165 83.0
FAN12G3847 Fragaria x ananassa HOM05D005733 ORTHO05D007442 1.8e-77 292.7 167 83.8
QL02p095666 Quercus lobata HOM05D005733 ORTHO05D007442 4.0e-77 291.6 169 79.9
FAN17G0482 Fragaria x ananassa HOM05D005733 ORTHO05D007442 5.2e-77 291.2 167 84.4
Ciclev10010607m.g Citrus clementina HOM05D005733 ORTHO05D007442 5.7e-76 287.7 168 79.8
Lj9A728T23 Lonicera japonica HOM05D005733 ORTHO05D007442 1.1e-74 283.5 165 78.8
Oeu058827.1 Olea europaea HOM05D005733 ORTHO05D007442 1.4e-74 283.1 165 79.4
CSS0014936 Camellia sinensis var. sinensis HOM05D005733 ORTHO05D007442 5.3e-74 281.2 165 79.4
Hma1.2p1_1531F.1_g289230 Hydrangea macrophylla HOM05D005733 ORTHO05D007442 1.6e-73 279.6 165 80.0
TAR383G0601 Trochodendron aralioides HOM05D005733 ORTHO05D007442 1.6e-73 279.6 165 80.6
Thecc.09G161700 Theobroma cacao HOM05D005733 ORTHO05D007442 3.5e-73 278.5 165 77.0
Gorai.004G103800 Gossypium raimondii HOM05D005733 ORTHO05D007442 4.5e-73 278.1 165 76.4
Glyma.13G091800 Glycine max HOM05D005733 ORTHO05D007442 5.9e-73 277.7 164 79.3
Sabra06G0134700 Salix brachista HOM05D005733 ORTHO05D007442 7.7e-73 277.3 168 75.6
Atru.chr7.506 Acer truncatum HOM05D005733 ORTHO05D007442 1.0e-72 276.9 168 77.4
Duzib187G0641 Durio zibethinus HOM05D005733 ORTHO05D007442 2.2e-72 275.8 165 75.8
Rhsim01G0012100 Rhododendron simsii HOM05D005733 ORTHO05D007442 5.0e-72 274.6 165 75.8
Actinidia20956 Actinidia chinensis HOM05D005733 ORTHO05D007442 6.5e-72 274.2 164 78.0
Glyma.17G068500 Glycine max HOM05D005733 ORTHO05D007442 6.5e-72 274.2 163 79.1
COL.COLO4_27474 Corchorus olitorius HOM05D005733 ORTHO05D007442 8.5e-72 273.9 165 73.9
arahy.Tifrunner.gnm1.ann1.0JVE27 Arachis hypogaea HOM05D005733 ORTHO05D007442 1.5e-71 273.1 161 79.5
arahy.Tifrunner.gnm1.ann1.GE8FUD Arachis hypogaea HOM05D005733 ORTHO05D007442 1.5e-71 273.1 164 78.0
Potri.006G176500 Populus trichocarpa HOM05D005733 ORTHO05D007442 1.9e-71 272.7 168 75.6
PGR142G3644 Punica granatum HOM05D005733 ORTHO05D007442 1.9e-71 272.7 165 75.8
Sed0012123 Sechium edule HOM05D005733 ORTHO05D007442 4.2e-71 271.6 161 75.8
CsaV3_7G001070 Cucumis sativus L. HOM05D005733 ORTHO05D007442 7.2e-71 270.8 161 77.6
Aqoxy7G03235 Aquilegia oxysepala HOM05D005733 ORTHO05D007442 1.6e-70 269.6 167 73.7
SalBow6G0174 Salvia bowleyana HOM05D005733 ORTHO05D007442 1.6e-70 269.6 165 75.2
MELO3C013348.2 Cucumis melo HOM05D005733 ORTHO05D007442 4.7e-70 268.1 161 77.0
MSTRG.19675 Avicennia marina HOM05D005733 ORTHO05D007442 6.1e-70 267.7 165 75.2
Cc06_g14000 Coffea canephora HOM05D005733 ORTHO05D007442 8.0e-70 267.3 165 73.3
EL10Ac8g18867 Beta vulgaris HOM05D005733 ORTHO05D007442 1.8e-69 266.2 165 73.9
Sc08g0005630 Simmondsia chinensis HOM05D005733 ORTHO05D007442 3.0e-69 265.4 165 75.2
SGA_v2.0_scaffold66G22515 Striga asiatica HOM05D005733 ORTHO05D007442 3.0e-69 265.4 165 73.9
TPR.G5298 Trifolium pratense HOM05D005733 ORTHO05D007442 3.0e-69 265.4 164 75.0
Phvul.003G151100 Phaseolus vulgaris HOM05D005733 ORTHO05D007442 4.0e-69 265.0 164 76.2
THA.LOC104811821 Tarenaya hassleriana HOM05D005733 ORTHO05D007442 5.2e-69 264.6 165 75.2
VMungo1215G3105 Vigna mungo HOM05D005733 ORTHO05D007442 5.2e-69 264.6 164 76.8
Psat4g048120 Pisum sativum HOM05D005733 ORTHO05D007442 8.8e-69 263.8 164 75.0
vmacro13073 Vaccinium macrocarpon HOM05D005733 ORTHO05D007442 8.8e-69 263.8 164 73.8
Lj4g0011389 Lotus japonicus HOM05D005733 ORTHO05D007442 1.2e-68 263.5 170 72.9
Migut.J01418 Erythranthe guttata HOM05D005733 ORTHO05D007442 2.6e-68 262.3 165 73.9
Manes.06G030000 Manihot esculenta HOM05D005733 ORTHO05D007442 4.4e-68 261.5 195 65.6
Hund08988 Selenicereus undatus HOM05D005733 ORTHO05D007442 7.5e-68 260.8 164 73.8
Cpa.g.sc75.16 Carica papaya HOM05D005733 ORTHO05D007442 9.8e-68 260.4 211 61.6
ClCG02G004040 Citrullus lanatus HOM05D005733 ORTHO05D007442 1.3e-67 260.0 192 67.2
MBI14_g08080_MAGBIO Magnolia biondii HOM05D005733 ORTHO05D007442 1.3e-67 260.0 161 73.9
Medtr4g129490 Medicago truncatula HOM05D005733 ORTHO05D007442 1.3e-67 260.0 164 74.4
PSO063G5638 Papaver somniferum HOM05D005733 ORTHO05D007442 1.3e-67 260.0 160 74.4
ATR0580G232 Amborella trichopoda HOM05D005733 ORTHO05D007442 2.8e-67 258.8 170 71.8
Aa31LG7G2230 Aethionema arabicum HOM05D005733 ORTHO05D007442 3.7e-67 258.5 167 71.3
FAN05G3225 Fragaria x ananassa HOM05D005733 ORTHO05D007442 3.7e-67 258.5 164 78.7
FAN05G4341 Fragaria x ananassa HOM05D005733 ORTHO05D007442 3.7e-67 258.5 164 78.7
HanXRQChr10g0284091 Helianthus annuus HOM05D005733 ORTHO05D007442 3.7e-67 258.5 165 74.5
Ca_21184_v3 Cicer arietinum L. HOM05D005733 ORTHO05D007442 6.3e-67 257.7 164 72.6
Eucgr.C01245 Eucalyptus grandis HOM05D005733 ORTHO05D007442 1.1e-66 256.9 165 75.2
DCAR_014719 Daucus carota HOM05D005733 ORTHO05D007442 3.1e-66 255.4 161 75.2
PSO782G5004 Papaver somniferum HOM05D005733 ORTHO05D007442 3.1e-66 255.4 160 72.5
Aa31sc193G30 Aethionema arabicum HOM05D005733 ORTHO05D007442 1.6e-65 253.1 167 70.1
AL7G24580 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 5.9e-65 251.1 165 70.9
A03p57670 Brassica napus HOM05D005733 ORTHO05D007442 1.7e-64 249.6 165 69.1
BraA03t14833Z Brassica rapa HOM05D005733 ORTHO05D007442 1.7e-64 249.6 165 69.1
CARHR235730 Cardamine hirsuta HOM05D005733 ORTHO05D007442 1.7e-64 249.6 164 70.7
AT4G28030 Arabidopsis thaliana HOM05D005733 ORTHO05D007442 3.8e-64 248.4 165 70.3
Thhalv10025984m.g Eutrema salsugineum HOM05D005733 ORTHO05D007442 6.5e-64 247.7 165 68.5
Lsat_1_v5_gn_8_64360 Lactuca sativa HOM05D005733 ORTHO05D007442 6.5e-64 247.7 165 70.9
CAN.G1870.3 Capsicum annuum HOM05D005733 ORTHO05D007442 2.5e-63 245.7 161 70.2
Carub.0007s1276 Capsella rubella HOM05D005733 ORTHO05D007442 3.2e-63 245.4 164 67.7
C07p55880 Brassica napus HOM05D005733 ORTHO05D007442 5.5e-63 244.6 165 68.5
Peaxi162Scf00525g00817 Petunia axillaris HOM05D005733 ORTHO05D007442 5.5e-63 244.6 164 70.1
Sp7g25980 Schrenkiella parvula HOM05D005733 ORTHO05D007442 5.5e-63 244.6 165 67.9
PGSC0003DMG402011224 Solanum tuberosum HOM05D005733 ORTHO05D007442 9.5e-63 243.8 161 70.2
BcaC06g32650 Brassica carinata HOM05D005733 ORTHO05D007442 1.2e-62 243.4 165 67.9
Nitab4.5_0005985g0010 Nicotiana tabacum HOM05D005733 ORTHO05D007442 1.2e-62 243.4 161 68.9
Solyc07g006340.3 Solanum lycopersicum HOM05D005733 ORTHO05D007442 2.1e-62 242.7 161 70.2
Sopen07g002430 Solanum pennellii HOM05D005733 ORTHO05D007442 2.1e-62 242.7 161 70.2
CDE02G3066 Ceratophyllum demersum HOM05D005733 ORTHO05D007442 1.0e-61 240.4 158 72.8
Lalb_Chr13g0300531 Lupinus albus HOM05D005733 ORTHO05D007442 1.0e-61 240.4 164 71.3
Psat4g010480 Pisum sativum HOM05D005733 ORTHO05D007442 5.2e-61 238.0 151 74.2
Haze_22166 Corylus avellana HOM05D005733 ORTHO05D007442 4.9e-59 231.5 124 84.7
HPP92_025686 Vanilla planifolia HOM05D005733 ORTHO05D007442 1.5e-55 219.9 164 61.6
ECA236G1842 Erigeron canadensis HOM05D005733 ORTHO05D007442 3.3e-55 218.8 152 69.7
Nn4g23704 Nelumbo nucifera HOM05D005733 ORTHO05D007442 3.4e-52 208.8 165 63.0
unitig_0.g187 Utricularia gibba HOM05D005733 ORTHO05D007442 9.8e-52 207.2 151 66.2
Zm00001eb412590 Zea mays HOM05D005733 ORTHO05D007442 7.0e-50 201.1 157 62.4
AUR62039751 Chenopodium quinoa HOM05D005733 ORTHO05D007442 1.3e-43 180.3 114 72.8
AUR62028411 Chenopodium quinoa HOM05D005733 ORTHO05D007442 1.7e-43 179.9 114 72.8
Gohir.A08G096462 Gossypium hirsutum HOM05D005733 ORTHO05D007442 1.4e-42 176.8 113 71.7
Gohir.D08G097100 Gossypium hirsutum HOM05D005733 ORTHO05D007442 2.0e-41 172.9 92 83.7
Cc00_g30300 Coffea canephora HOM05D005733 ORTHO05D007442 3.9e-40 168.7 114 67.5
CDE05G3532 Ceratophyllum demersum HOM05D001854 ORTHO05D001800 3.4e-36 155.6 115 66.1
AL3G40460 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 9.8e-36 154.1 112 68.8
SEGI_16930 Sequoiadendron giganteum HOM05D005733 ORTHO05D007442 5.4e-34 148.3 161 46.6
Mapoly0019s0038 Marchantia polymorpha HOM05D005733 ORTHO05D007442 1.2e-33 147.1 161 47.2
Ah.14g084100 Amaranthus hybridus HOM05D005733 ORTHO05D007442 4.6e-33 145.2 181 45.9
Pp3c1_4600 Physcomitrium patens HOM05D005733 ORTHO05D007442 7.8e-33 144.4 160 46.2
AL7G30680 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 2.3e-32 142.9 113 65.5
AL6G37990 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 3.0e-32 142.5 113 65.5
AL1G31260 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 3.9e-32 142.1 113 65.5
Psat4g048000 Pisum sativum HOM05D005733 ORTHO05D007442 7.3e-31 137.9 79 81.0
AagrBONN_evm.TU.Sc2ySwM_344.3527 Anthoceros agrestis HOM05D005733 ORTHO05D007442 1.2e-30 137.1 157 45.9
Nitab4.5_0005551g0010 Nicotiana tabacum HOM05D005733 ORTHO05D007442 1.6e-30 136.7 99 63.6
BcaC09g50518 Brassica carinata HOM05D005733 ORTHO05D007442 8.1e-30 134.4 148 53.4
C01p24460 Brassica napus HOM05D005733 ORTHO05D007442 1.2e-28 130.6 104 60.6
FAN07G2740 Fragaria x ananassa HOM05D005733 ORTHO05D007442 7.8e-25 117.9 74 77.0
Pp3c11_5280 Physcomitrium patens HOM05D005733 ORTHO05D007442 3.3e-23 112.5 185 34.6
Dinv41304 Davidia involucrata HOM05D005733 ORTHO05D007442 1.6e-22 110.2 73 72.6
arahy.Tifrunner.gnm1.ann1.IUS3AS Arachis hypogaea HOM05D005733 ORTHO05D007442 3.1e-21 105.9 74 64.9
arahy.Tifrunner.gnm1.ann1.65BVJ7 Arachis hypogaea HOM05D005733 ORTHO05D007442 4.4e-20 102.1 67 71.6
Cre02.g084550 Chlamydomonas reinhardtii HOM05D005733 ORTHO05D007442 1.7e-16 90.1 114 46.5
BolC2t09466H Brassica oleracea HOM05D005733 ORTHO05D007442 5.1e-16 88.6 127 42.5
Os08g0260000 Oryza sativa ssp. japonica HOM05D005733 ORTHO05D007442 1.1e-15 87.4 72 55.6
C02p34360 Brassica napus HOM05D005733 ORTHO05D007442 1.5e-15 87.0 127 41.7
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 9.6e-15 84.3 58 62.1
MCO03G095 Micromonas commoda HOM05D005733 ORTHO05D007442 1.3e-14 84.0 82 51.2
AL1G53920 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 9.0e-13 77.8 86 46.5
A01p19410 Brassica napus HOM05D007179 ORTHO05D009124 9.9e-12 74.3 115 42.6
BraA01t01881Z Brassica rapa HOM05D007179 ORTHO05D009124 9.9e-12 74.3 115 42.6
AagrBONN_evm.TU.Sc2ySwM_117.2238 Anthoceros agrestis HOM05D004023 ORTHO05D004681 1.7e-11 73.6 95 41.1
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 2.9e-11 72.8 122 32.8
Pp3c12_9920 Physcomitrium patens HOM05D004023 ORTHO05D004681 3.8e-11 72.4 138 31.2
PRCOL_00005269 Prasinoderma coloniale HOM05D005733 ORTHO05D007442 4.2e-10 68.9 135 35.6
Hund26406 Selenicereus undatus HOM05D005733 ORTHO05D007442 2.1e-09 66.6 73 46.6
BolC7t46066H Brassica oleracea HOM05D007179 ORTHO05D009124 3.0e-08 62.8 33 81.8
vmacro04098 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 3.9e-08 62.4 97 38.1
Nn8g38657 Nelumbo nucifera HOM05D004023 ORTHO05D004681 5.1e-08 62.0 108 36.1
Haze_22164 Corylus avellana HOM05D005733 ORTHO05D007442 6.7e-08 61.6 41 70.7
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 6.7e-08 61.6 48 58.3
Cc01_g06740 Coffea canephora HOM05D004023 ORTHO05D004681 8.7e-08 61.2 97 39.2
Migut.D00690 Erythranthe guttata HOM05D004023 ORTHO05D004681 1.1e-07 60.8 97 36.1
MBI13_g41748_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 1.1e-07 60.8 99 39.4
Rhsim13G0202100 Rhododendron simsii HOM05D004023 ORTHO05D004681 1.1e-07 60.8 97 37.1
ATR1096G005 Amborella trichopoda HOM05D004023 ORTHO05D004681 1.5e-07 60.5 101 38.6
arahy.Tifrunner.gnm1.ann1.00M671 Arachis hypogaea HOM05D005733 ORTHO05D007442 1.9e-07 60.1 38 65.8
GSVIVG01037415001 Vitis vinifera HOM05D004023 ORTHO05D004681 1.9e-07 60.1 98 37.8
BcaC09g50520 Brassica carinata HOM05D005733 ORTHO05D007442 3.3e-07 59.3 33 78.8
AUR62017796 Chenopodium quinoa HOM05D004023 ORTHO05D004681 3.3e-07 59.3 97 40.2
Lalb_Chr08g0232581 Lupinus albus HOM05D004023 ORTHO05D004681 3.3e-07 59.3 123 37.4
PSO339G3635 Papaver somniferum HOM05D004023 ORTHO05D004681 3.3e-07 59.3 97 35.1
HanXRQChr14g0431991 Helianthus annuus HOM05D004023 ORTHO05D004681 4.3e-07 58.9 73 38.4
Peaxi162Scf00062g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 4.3e-07 58.9 97 37.1
Actinidia24483 Actinidia chinensis HOM05D004023 ORTHO05D004681 5.6e-07 58.5 99 40.4
PGR119G0815 Punica granatum HOM05D004023 ORTHO05D004681 5.6e-07 58.5 97 37.1
Ah.03g147260 Amaranthus hybridus HOM05D004023 ORTHO05D004681 7.4e-07 58.2 97 38.1
arahy.Tifrunner.gnm1.ann1.SMR3WG Arachis hypogaea HOM05D000783 ORTHO05D015970 7.4e-07 58.2 52 53.8
MSTRG.18474 Avicennia marina HOM05D004023 ORTHO05D004681 7.4e-07 58.2 97 35.1
SGA_v2.0_scaffold29G12111 Striga asiatica HOM05D004023 ORTHO05D004681 7.4e-07 58.2 127 33.1
Mapoly0023s0080 Marchantia polymorpha HOM05D004023 ORTHO05D004681 9.6e-07 57.8 148 33.1
Hund12723 Selenicereus undatus HOM05D004023 ORTHO05D004681 1.3e-06 57.4 96 39.6
arahy.Tifrunner.gnm1.ann1.3Q9906 Arachis hypogaea HOM05D000783 ORTHO05D015970 2.8e-06 56.2 43 53.5
AUR62003487 Chenopodium quinoa HOM05D004023 ORTHO05D004681 2.8e-06 56.2 99 38.4
Eucgr.J00649 Eucalyptus grandis HOM05D004023 ORTHO05D004681 2.8e-06 56.2 97 35.1
PSO384G4677 Papaver somniferum HOM05D004023 ORTHO05D004681 2.8e-06 56.2 97 36.1
Aqoxy1G00042 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 3.7e-06 55.8 97 34.0
BcaNung01603 Brassica carinata HOM05D007179 ORTHO05D009124 3.7e-06 55.8 33 75.8
DCAR_006328 Daucus carota HOM05D004023 ORTHO05D004681 4.8e-06 55.5 99 36.4
Oeu020552.2 Olea europaea HOM05D004023 ORTHO05D004681 4.8e-06 55.5 128 31.2
SEGI_14760 Sequoiadendron giganteum HOM05D004023 ORTHO05D004681 4.8e-06 55.5 103 31.1


User provided reference genes

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