Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 6.3e-70 267.3 135 100.0
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 5.1e-43 177.9 185 56.2
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.4e-32 143.3 148 60.1
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 8.9e-32 140.6 142 62.0
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.6e-31 139.0 148 58.1
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.1e-29 133.7 145 52.4
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 1.1e-29 133.7 159 52.8
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.2e-29 132.1 148 56.8
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 4.2e-29 131.7 148 56.1
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.1e-28 129.4 148 56.1
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 7.8e-28 127.5 156 45.5
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 1.3e-27 126.7 151 51.0
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 6.6e-27 124.4 177 46.3
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 6.6e-27 124.4 159 44.0
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 8.7e-27 124.0 139 48.2
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 1.6e-25 119.8 112 68.8
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 4.8e-25 118.2 156 44.2
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 6.2e-25 117.9 149 49.0
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 8.1e-25 117.5 149 49.0
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.8e-24 116.3 179 40.8
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 1.8e-24 116.3 197 37.1
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.1e-24 115.5 136 48.5
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 3.1e-24 115.5 159 44.0
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 8.4e-22 107.5 164 45.7
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.4e-21 106.7 143 44.1
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.4e-21 105.9 157 39.5
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 9.3e-21 104.0 188 35.6
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 3.5e-20 102.1 56 76.8
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.8e-19 99.8 170 40.6
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 5.1e-19 98.2 145 44.1
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.5e-18 96.7 167 37.1
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 2.5e-18 95.9 80 63.8
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.5e-18 95.9 183 44.3
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 2.5e-18 95.9 49 81.6
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 5.6e-18 94.7 175 35.4
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 1.3e-17 93.6 147 40.1
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 1.3e-17 93.6 146 38.4
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 2.8e-17 92.4 82 57.3
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 2.8e-17 92.4 80 55.0
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 3.6e-17 92.0 150 42.7
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 3.6e-17 92.0 80 58.8
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 4.8e-17 91.7 127 39.4
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 6.2e-17 91.3 78 59.0
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 6.2e-17 91.3 160 38.8
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 8.1e-17 90.9 79 58.2
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 8.1e-17 90.9 52 78.8
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 1.1e-16 90.5 66 66.7
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 1.1e-16 90.5 77 58.4
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.4e-16 90.1 67 65.7
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 1.4e-16 90.1 144 43.8
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 1.4e-16 90.1 52 78.8
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 1.4e-16 90.1 87 56.3
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 1.4e-16 90.1 87 56.3
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 3.1e-16 89.0 50 80.0
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 4.0e-16 88.6 173 38.7
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 4.0e-16 88.6 80 57.5
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 5.3e-16 88.2 136 44.1
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 5.3e-16 88.2 80 57.5
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 5.3e-16 88.2 80 57.5
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 5.3e-16 88.2 47 83.0
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 5.3e-16 88.2 47 83.0
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 5.3e-16 88.2 52 76.9
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 6.9e-16 87.8 148 37.8
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 1.2e-15 87.0 50 78.0
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 5.8e-15 84.7 47 74.5
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 9.9e-15 84.0 46 78.3
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 2.9e-14 82.4 81 50.6
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 3.8e-14 82.0 77 53.2
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 3.8e-14 82.0 140 40.7
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 3.8e-14 82.0 135 40.0
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 6.4e-14 81.3 151 35.8
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 6.4e-14 81.3 148 35.8
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 6.4e-14 81.3 148 37.2
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 8.4e-14 80.9 48 75.0
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 8.4e-14 80.9 143 35.7
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 2.4e-13 79.3 72 55.6
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.2e-13 79.0 40 87.5
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 4.2e-13 78.6 131 45.0
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 4.2e-13 78.6 44 75.0
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 5.5e-13 78.2 48 70.8
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 9.3e-13 77.4 72 55.6
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 9.3e-13 77.4 47 70.2
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.2e-12 77.0 46 76.1
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 1.2e-12 77.0 135 33.3
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 1.2e-12 77.0 153 34.6
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 1.6e-12 76.6 70 50.0
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.6e-12 76.6 40 85.0
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.1e-12 76.3 40 82.5
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 2.7e-12 75.9 47 68.1
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 3.5e-12 75.5 58 60.3
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.5e-12 75.5 46 73.9
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.5e-12 75.5 46 73.9
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.5e-12 75.5 46 73.9
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 3.5e-12 75.5 44 77.3
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 4.6e-12 75.1 75 50.7
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 4.6e-12 75.1 75 50.7
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 4.6e-12 75.1 46 67.4
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 4.6e-12 75.1 48 66.7
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 6.0e-12 74.7 138 36.2
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 7.9e-12 74.3 49 63.3
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.9e-12 74.3 71 53.5
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.9e-12 74.3 71 53.5
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 7.9e-12 74.3 62 61.3
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.0e-11 73.9 72 52.8
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.0e-11 73.9 74 48.6
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 1.3e-11 73.6 62 58.1
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 1.3e-11 73.6 74 47.3
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.8e-11 73.2 72 51.4
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.8e-11 73.2 72 52.8
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 1.8e-11 73.2 129 38.0
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 3.0e-11 72.4 44 75.0
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 3.0e-11 72.4 71 52.1
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 3.0e-11 72.4 52 61.5
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 3.0e-11 72.4 52 61.5
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 5.1e-11 71.6 57 57.9
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 6.7e-11 71.2 135 41.5
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 1.1e-10 70.5 46 63.0
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.1e-10 70.5 47 68.1
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.1e-10 70.5 75 49.3
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 1.5e-10 70.1 68 55.9
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.9e-10 69.7 72 50.0
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 2.5e-10 69.3 81 46.9
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 5.6e-10 68.2 84 44.0
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 7.4e-10 67.8 47 55.3
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 1.3e-09 67.0 120 38.3
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 1.6e-09 66.6 48 62.5
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 1.6e-09 66.6 45 66.7
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 6.2e-09 64.7 49 55.1
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 8.2e-09 64.3 129 34.9
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 1.4e-08 63.5 45 57.8
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 1.8e-08 63.2 46 58.7
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 2.4e-08 62.8 61 50.8
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 3.1e-08 62.4 62 48.4
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 9.0e-08 60.8 61 49.2
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 9.0e-08 60.8 47 57.4
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 1.2e-07 60.5 42 64.3
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.5e-07 60.1 75 44.0
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 2.0e-07 59.7 47 57.4
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 2.0e-07 59.7 47 57.4
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.0e-06 57.4 42 59.5
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 2.9e-06 55.8 47 53.2
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 6.5e-06 54.7 65 40.0
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 6.5e-06 54.7 78 35.9


User provided reference genes

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