Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 5.3e-66 254.2 128 100.0
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 1.1e-52 209.9 128 83.6
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 1.3e-51 206.5 128 82.0
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 7.1e-47 190.7 129 78.3
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 1.3e-45 186.4 133 75.9
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 5.1e-45 184.5 125 77.6
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.5e-44 182.2 126 76.2
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 2.5e-44 182.2 128 77.3
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 8.5e-40 167.2 130 69.2
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 3.6e-38 161.8 128 68.8
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 1.3e-35 153.3 128 66.4
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 6.3e-35 151.0 128 67.2
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.1e-34 150.2 102 76.5
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 2.4e-34 149.1 129 62.8
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.1e-34 148.3 102 76.5
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 9.1e-34 147.1 127 64.6
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 1.2e-33 146.7 121 69.4
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 2.6e-33 145.6 126 68.3
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 3.4e-33 145.2 126 67.5
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.5e-33 144.8 135 60.7
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 5.9e-33 144.4 126 64.3
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 5.9e-33 144.4 126 69.0
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 5.9e-33 144.4 128 66.4
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 5.9e-33 144.4 129 65.1
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 7.7e-33 144.1 128 66.4
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 1.0e-32 143.7 133 61.7
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 1.7e-32 142.9 123 66.7
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.8e-32 141.7 126 68.3
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 8.5e-32 140.6 132 66.7
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 8.5e-32 140.6 126 67.5
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 4.2e-31 138.3 123 61.8
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 5.5e-31 137.9 132 63.6
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 5.5e-31 137.9 123 61.0
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 7.2e-31 137.5 125 62.4
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.2e-30 136.7 117 65.0
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 6.1e-30 134.4 123 61.8
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 3.0e-29 132.1 124 60.5
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 3.9e-29 131.7 126 58.7
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 5.1e-29 131.3 125 60.0
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.5e-28 129.8 128 59.4
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 1.5e-28 129.8 132 55.3
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 2.0e-28 129.4 134 53.0
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 2.0e-28 129.4 123 59.3
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 2.6e-28 129.0 131 55.7
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.7e-27 126.3 128 61.7
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.7e-27 126.3 128 61.7
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 1.7e-27 126.3 124 60.5
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 2.2e-27 125.9 126 62.7
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 2.2e-27 125.9 119 58.8
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 2.8e-27 125.6 117 60.7
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 8.2e-27 124.0 126 57.1
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 8.2e-27 124.0 128 59.4
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 1.1e-26 123.6 140 50.7
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 2.4e-26 122.5 129 57.4
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.4e-26 122.5 126 54.0
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.1e-26 121.7 128 58.6
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 7.0e-26 120.9 160 50.0
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 7.0e-26 120.9 120 54.2
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 9.1e-26 120.6 126 56.3
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 9.1e-26 120.6 130 56.9
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.2e-25 120.2 125 56.0
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.2e-25 120.2 134 60.4
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 1.5e-25 119.8 124 58.1
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 2.0e-25 119.4 125 59.2
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 2.6e-25 119.0 126 54.8
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 3.5e-25 118.6 126 54.8
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 3.5e-25 118.6 133 57.9
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 4.5e-25 118.2 126 56.3
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 4.5e-25 118.2 126 56.3
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 4.5e-25 118.2 134 60.4
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 7.7e-25 117.5 135 51.1
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 1.0e-24 117.1 137 53.3
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 2.2e-24 115.9 126 54.8
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 2.2e-24 115.9 125 61.6
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 2.2e-24 115.9 122 56.6
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 3.8e-24 115.2 124 51.6
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 3.8e-24 115.2 123 55.3
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 8.5e-24 114.0 120 53.3
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 1.1e-23 113.6 125 55.2
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.5e-23 113.2 132 51.5
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 1.9e-23 112.8 125 55.2
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 1.9e-23 112.8 125 55.2
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 1.9e-23 112.8 125 55.2
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.9e-23 112.8 122 56.6
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 2.5e-23 112.5 132 49.2
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.2e-23 112.1 123 44.7
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 5.5e-23 111.3 124 52.4
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 7.2e-23 110.9 115 56.5
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 1.2e-22 110.2 123 54.5
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 1.2e-22 110.2 126 59.5
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.2e-22 110.2 112 58.0
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.7e-22 109.0 123 48.8
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 2.7e-22 109.0 115 61.7
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 4.7e-22 108.2 126 43.7
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.0e-21 107.1 119 52.1
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 1.4e-21 106.7 115 54.8
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 1.8e-21 106.3 122 54.9
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 3.0e-21 105.5 125 51.2
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.0e-21 105.1 125 48.0
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.0e-21 105.1 125 48.0
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 6.7e-21 104.4 126 44.4
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 6.7e-21 104.4 140 47.1
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 6.7e-21 104.4 119 51.3
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.5e-20 103.2 121 51.2
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 2.0e-20 102.8 116 53.4
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 2.0e-20 102.8 136 50.0
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.0e-20 102.8 127 48.0
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 3.3e-20 102.1 123 49.6
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 3.3e-20 102.1 119 51.3
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 7.4e-20 100.9 120 51.7
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 7.4e-20 100.9 122 52.5
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 7.4e-20 100.9 119 51.3
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 1.3e-19 100.1 113 56.6
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 2.2e-19 99.4 124 51.6
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 2.2e-19 99.4 114 55.3
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 2.8e-19 99.0 118 52.5
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 8.2e-19 97.4 95 60.0
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 8.2e-19 97.4 117 47.9
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 3.1e-18 95.5 110 52.7
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 4.1e-18 95.1 125 48.0
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 7.0e-18 94.4 125 48.0
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 2.0e-17 92.8 127 44.9
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 2.6e-17 92.4 127 44.9
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.5e-17 92.0 114 51.8
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 4.5e-17 91.7 118 46.6
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 7.7e-17 90.9 114 51.8
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 7.7e-17 90.9 112 50.9
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 7.7e-17 90.9 138 44.2
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 1.0e-16 90.5 125 46.4
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 1.0e-16 90.5 126 47.6
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 1.0e-16 90.5 133 42.1
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 1.0e-16 90.5 135 45.9
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 1.7e-16 89.7 135 46.7
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 2.2e-16 89.4 123 45.5
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 2.2e-16 89.4 115 47.8
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 2.9e-16 89.0 86 60.5
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 2.9e-16 89.0 86 60.5
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 2.9e-16 89.0 133 45.9
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.2e-15 85.5 121 47.9
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 4.2e-15 85.1 138 43.5
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 5.5e-15 84.7 114 47.4
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.2e-14 83.6 129 41.1
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 8.0e-14 80.9 111 48.6
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.0e-13 80.5 136 39.7
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.0e-13 79.0 121 45.5
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 4.0e-13 78.6 165 38.8
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 8.8e-13 77.4 76 59.2
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 1.2e-12 77.0 135 45.9
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.2e-12 77.0 132 38.6
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.2e-12 77.0 126 41.3
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 3.4e-12 75.5 124 40.3
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 6.3e-11 71.2 118 39.8
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 8.3e-11 70.9 84 48.8
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 1.1e-10 70.5 117 44.4
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 1.1e-10 70.5 145 37.9
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.1e-10 70.5 100 47.0
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 4.1e-10 68.6 166 34.3
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 4.5e-09 65.1 123 34.1
PGR044G1765 Punica granatum HOM05D001798 ORTHO05D005040 5.9e-09 64.7 130 41.5
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 5.9e-09 64.7 165 33.9
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 1.3e-08 63.5 141 41.1
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 2.2e-08 62.8 95 47.4
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 5.5e-07 58.2 78 43.6
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 4.7e-06 55.1 143 32.2


User provided reference genes

Program Settings