Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 1.1e-203 713.4 441 100.0
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 6.6e-108 395.2 487 55.4
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.0e-76 291.6 470 44.3
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.7e-76 290.8 470 43.8
MD13G1240600 Malus domestica HOM05D005890 ORTHO05D006717 8.7e-76 288.5 472 48.7
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 9.6e-75 285.0 468 42.7
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 3.7e-66 256.5 482 42.5
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 4.0e-65 253.1 512 40.8
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 1.2e-64 251.5 513 38.2
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 5.5e-62 242.7 589 38.9
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 1.6e-61 241.1 455 47.7
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 5.3e-57 226.1 498 39.8
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 1.3e-55 221.5 441 40.4
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 1.9e-54 217.6 452 40.3
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 5.5e-54 216.1 433 41.8
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 2.7e-53 213.8 482 41.9
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 1.0e-52 211.8 536 34.9
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 1.9e-51 207.6 204 58.8
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 3.3e-51 206.8 450 44.7
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 9.7e-51 205.3 437 40.3
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 1.6e-50 204.5 528 35.2
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 4.8e-50 203.0 434 40.3
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 8.2e-50 202.2 437 40.0
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 1.4e-49 201.4 460 42.0
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 1.8e-49 201.1 445 38.0
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 3.4e-48 196.8 500 34.6
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 3.4e-48 196.8 446 39.9
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 4.5e-48 196.4 439 39.9
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 5.9e-48 196.1 480 36.2
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 7.7e-48 195.7 424 38.9
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 1.7e-47 194.5 476 39.1
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 5.0e-47 193.0 230 55.7
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 5.0e-47 193.0 534 36.1
FvH4_4g06950 Fragaria vesca HOM05D005890 ORTHO05D006717 1.1e-46 191.8 414 37.7
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 1.4e-46 191.4 468 38.7
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 1.9e-46 191.0 450 43.1
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 3.2e-46 190.3 587 31.3
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 3.2e-46 190.3 508 33.1
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 4.2e-46 189.9 398 39.4
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 1.6e-45 188.0 518 37.1
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 1.6e-45 188.0 510 37.3
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 1.0e-44 185.3 436 37.6
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 1.4e-44 184.9 439 36.9
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 6.7e-44 182.6 541 31.8
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 2.0e-43 181.0 511 34.6
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 2.5e-43 180.6 435 37.5
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 3.3e-43 180.3 435 35.4
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 9.7e-43 178.7 454 39.4
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 2.2e-42 177.6 511 34.1
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 4.8e-42 176.4 230 51.3
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 1.4e-41 174.9 428 41.4
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 2.4e-41 174.1 439 37.8
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 2.4e-41 174.1 461 34.3
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 4.1e-41 173.3 445 36.9
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 4.1e-41 173.3 493 32.9
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 2.6e-40 170.6 426 35.7
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 1.7e-39 167.9 444 34.5
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 3.8e-39 166.8 479 34.2
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 3.8e-39 166.8 428 37.4
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 1.9e-38 164.5 452 37.8
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 2.5e-38 164.1 450 36.0
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 2.5e-38 164.1 237 47.3
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 3.2e-38 163.7 426 37.3
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 4.2e-38 163.3 440 40.9
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 5.5e-38 162.9 509 34.2
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 1.2e-37 161.8 463 35.9
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 1.6e-37 161.4 472 35.8
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 1.6e-37 161.4 501 30.7
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 2.1e-37 161.0 463 36.7
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 2.1e-37 161.0 442 36.9
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 6.1e-37 159.5 226 46.9
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 3.0e-36 157.1 508 32.7
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 6.7e-36 156.0 186 51.1
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 6.7e-36 156.0 397 40.6
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 1.1e-35 155.2 448 34.8
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 2.6e-35 154.1 437 36.6
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 1.3e-34 151.8 195 50.3
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 1.7e-34 151.4 441 32.0
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 2.8e-34 150.6 426 32.4
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 3.7e-34 150.2 93 79.6
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 8.2e-34 149.1 436 35.3
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 1.1e-33 148.7 87 81.6
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 2.4e-33 147.5 89 78.7
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 2.4e-33 147.5 451 31.7
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 4.1e-33 146.7 374 35.3
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 5.3e-33 146.4 443 36.1
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 5.3e-33 146.4 411 36.0
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 7.0e-33 146.0 93 75.3
COL.COLO4_08570 Corchorus olitorius HOM05D005890 ORTHO05D006717 2.6e-32 144.1 588 35.2
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 1.1e-30 138.7 534 34.6
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 1.5e-30 138.3 225 42.7
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 1.5e-30 138.3 187 47.6
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 2.5e-30 137.5 441 33.1
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 7.2e-30 136.0 481 36.2
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 9.4e-30 135.6 118 61.9
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 1.2e-29 135.2 116 62.1
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 1.2e-29 135.2 116 62.1
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 1.2e-29 135.2 430 31.9
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 2.1e-29 134.4 443 33.0
CSS0049604 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 1.4e-28 131.7 211 44.1
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 1.8e-28 131.3 453 33.8
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 3.3e-27 127.1 445 36.6
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 3.3e-27 127.1 445 36.6
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 3.3e-27 127.1 445 36.6
Haze_22044 Corylus avellana HOM05D005890 ORTHO05D006717 5.7e-27 126.3 195 44.6
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 7.5e-27 125.9 399 34.1
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 7.5e-27 125.9 410 30.7
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 2.2e-26 124.4 87 72.4
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 2.2e-26 124.4 87 72.4
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 1.1e-25 122.1 196 40.3
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 1.4e-25 121.7 82 70.7
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 1.8e-25 121.3 414 33.3
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 3.1e-25 120.6 444 32.2
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 9.1e-25 119.0 443 34.1
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 2.7e-24 117.5 450 30.7
Gohir.D04G007200 Gossypium hirsutum HOM05D005890 ORTHO05D006717 1.7e-23 114.8 387 34.4
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 2.2e-23 114.4 90 66.7
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 8.5e-23 112.5 83 66.3
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 1.1e-22 112.1 85 61.2
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 9.4e-22 109.0 73 71.2
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 1.2e-21 108.6 73 74.0
Carub.0008s1762 Capsella rubella HOM05D005890 ORTHO05D006717 1.4e-20 105.1 90 63.3
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 3.4e-19 100.5 90 61.1
SEGI_22268 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 2.2e-18 97.8 62 75.8
CiPaw.08G031700 Carya illinoinensis HOM05D005890 ORTHO05D006717 1.4e-17 95.1 468 26.9
Cre01.g055400 Chlamydomonas reinhardtii HOM05D005890 ORTHO05D006717 1.0e-15 89.0 94 61.7
Cpa.g.c33129.1 Carica papaya HOM05D005890 ORTHO05D006717 2.9e-15 87.4 101 52.5
Sabra18G0114500 Salix brachista HOM05D005890 ORTHO05D006717 2.7e-13 80.9 425 30.8
Zm00001eb394450 Zea mays HOM05D014690 ORTHO05D006717 5.7e-11 73.2 55 63.6
DCAR_029041 Daucus carota HOM05D005890 ORTHO05D006717 3.7e-10 70.5 49 69.4
MCO09G065 Micromonas commoda HOM05D005890 ORTHO05D006717 3.7e-10 70.5 83 56.6
A10p14440 Brassica napus HOM05D005890 ORTHO05D006717 6.6e-07 59.7 34 82.4
BraA10t43535Z Brassica rapa HOM05D005890 ORTHO05D006717 6.6e-07 59.7 34 82.4


User provided reference genes

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