Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G072000 Prunus persica HOM05D006260 ORTHO05D007860 1.6e-89 332.8 178 100.0
MD16G1245000 Malus domestica HOM05D006260 ORTHO05D007860 1.1e-80 303.5 178 91.0
MD16G1244900 Malus domestica HOM05D006260 ORTHO05D007860 3.4e-79 298.5 178 89.9
RcHm_v2.0_Chr4g0398801 Rosa chinensis HOM05D006260 ORTHO05D007860 2.5e-74 282.3 178 86.5
FvH4_4g06900 Fragaria vesca HOM05D006260 ORTHO05D007860 2.8e-73 278.9 178 84.8
FAN12G1915 Fragaria x ananassa HOM05D006260 ORTHO05D007860 1.2e-71 273.5 173 85.5
Sed0022699 Sechium edule HOM05D006260 ORTHO05D007860 7.6e-71 270.8 178 81.5
FAN22G1136 Fragaria x ananassa HOM05D006260 ORTHO05D007860 9.9e-71 270.4 173 85.0
Atru.chr7.896 Acer truncatum HOM05D006260 ORTHO05D007860 1.7e-70 269.6 178 81.5
ClCG06G013810 Citrullus lanatus HOM05D006260 ORTHO05D007860 2.9e-70 268.9 178 82.6
FAN07G2370 Fragaria x ananassa HOM05D006260 ORTHO05D007860 2.9e-70 268.9 173 84.4
CANSAT11G1813 Cannabis sativa HOM05D006260 ORTHO05D007860 3.8e-70 268.5 176 82.4
CiPaw.08G031300 Carya illinoinensis HOM05D006260 ORTHO05D007860 3.8e-70 268.5 178 81.5
MELO3C017413.2 Cucumis melo HOM05D006260 ORTHO05D007860 1.1e-69 266.9 178 82.0
CsaV3_1G032030 Cucumis sativus L. HOM05D006260 ORTHO05D007860 1.9e-69 266.2 178 82.0
Haze_22050 Corylus avellana HOM05D006260 ORTHO05D007860 2.4e-69 265.8 172 82.0
Oeu043898.1 Olea europaea HOM05D006260 ORTHO05D007860 7.1e-69 264.2 179 77.1
SGA_v2.0_scaffold31G12783 Striga asiatica HOM05D006260 ORTHO05D007860 7.1e-69 264.2 159 84.9
Oeu012389.1 Olea europaea HOM05D006260 ORTHO05D007860 9.2e-69 263.8 180 77.2
MSTRG.19359 Avicennia marina HOM05D006260 ORTHO05D007860 1.2e-68 263.5 168 82.1
unitig_8.g4053 Utricularia gibba HOM05D006260 ORTHO05D007860 1.6e-68 263.1 159 84.9
TWI63G0540 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 2.1e-68 262.7 178 78.1
Potri.006G072600 Populus trichocarpa HOM05D006260 ORTHO05D007860 3.5e-68 261.9 178 78.1
CANSAT21G0469 Cannabis sativa HOM05D006260 ORTHO05D007860 4.6e-68 261.5 176 80.1
Migut.J00776 Erythranthe guttata HOM05D006260 ORTHO05D007860 4.6e-68 261.5 167 80.8
Thhalv10026375m.g Eutrema salsugineum HOM05D006260 ORTHO05D007860 4.6e-68 261.5 179 77.1
GSVIVG01029271001 Vitis vinifera HOM05D006260 ORTHO05D007860 4.6e-68 261.5 178 79.2
Glyma.15G167900 Glycine max HOM05D006260 ORTHO05D007860 7.8e-68 260.8 176 77.8
Solyc05g006080.1 Solanum lycopersicum HOM05D006260 ORTHO05D007860 7.8e-68 260.8 179 78.2
Sopen05g002100 Solanum pennellii HOM05D006260 ORTHO05D007860 7.8e-68 260.8 179 78.2
AL7G22380 Arabidopsis lyrata HOM05D006260 ORTHO05D007860 1.0e-67 260.4 178 75.8
Eucgr.C00083 Eucalyptus grandis HOM05D006260 ORTHO05D007860 1.3e-67 260.0 176 80.1
Thecc.09G192000 Theobroma cacao HOM05D006260 ORTHO05D007860 1.7e-67 259.6 179 78.2
Lalb_Chr23g0276701 Lupinus albus HOM05D006260 ORTHO05D007860 2.3e-67 259.2 179 78.2
AT4G29870 Arabidopsis thaliana HOM05D006260 ORTHO05D007860 3.0e-67 258.8 178 75.3
CARHR237780 Cardamine hirsuta HOM05D006260 ORTHO05D007860 3.9e-67 258.5 179 76.5
Carub.0004s1476 Capsella rubella HOM05D006260 ORTHO05D007860 5.1e-67 258.1 178 75.3
PGSC0003DMG400015598 Solanum tuberosum HOM05D006260 ORTHO05D007860 6.6e-67 257.7 179 76.5
TWI38G0675 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 1.1e-66 256.9 178 75.8
Glyma.09G061600 Glycine max HOM05D006260 ORTHO05D007860 1.5e-66 256.5 177 78.5
PGR018G0003 Punica granatum HOM05D006260 ORTHO05D007860 1.9e-66 256.1 184 76.6
PGR142G0891 Punica granatum HOM05D006260 ORTHO05D007860 1.9e-66 256.1 184 76.6
PGR142G1877 Punica granatum HOM05D006260 ORTHO05D007860 1.9e-66 256.1 184 76.6
Aa31LG2G20680 Aethionema arabicum HOM05D006260 ORTHO05D007860 2.5e-66 255.8 179 76.0
Potri.018G139600 Populus trichocarpa HOM05D006260 ORTHO05D007860 2.5e-66 255.8 179 78.2
SalBow3G0163 Salvia bowleyana HOM05D006260 ORTHO05D007860 2.5e-66 255.8 165 80.6
Ciclev10009690m.g Citrus clementina HOM05D006260 ORTHO05D007860 3.3e-66 255.4 178 77.0
Cc05_g06400 Coffea canephora HOM05D006260 ORTHO05D007860 4.3e-66 255.0 178 77.0
Lj5A659T18 Lonicera japonica HOM05D006260 ORTHO05D007860 4.3e-66 255.0 178 75.8
Manes.14G161300 Manihot esculenta HOM05D006260 ORTHO05D007860 4.3e-66 255.0 159 83.0
Psat1g142480 Pisum sativum HOM05D006260 ORTHO05D007860 4.3e-66 255.0 176 76.1
CARHR109790 Cardamine hirsuta HOM05D006260 ORTHO05D007860 7.3e-66 254.2 178 75.8
Sp7g27680 Schrenkiella parvula HOM05D006260 ORTHO05D007860 7.3e-66 254.2 179 73.7
BraA03t14986Z Brassica rapa HOM05D006260 ORTHO05D007860 9.6e-66 253.8 178 72.5
Carub.0003s3356 Capsella rubella HOM05D006260 ORTHO05D007860 9.6e-66 253.8 178 74.7
TPR.G2550 Trifolium pratense HOM05D006260 ORTHO05D007860 9.6e-66 253.8 178 76.4
A01p08290 Brassica napus HOM05D006260 ORTHO05D007860 1.6e-65 253.1 178 70.8
BraA01t00777Z Brassica rapa HOM05D006260 ORTHO05D007860 1.6e-65 253.1 178 70.8
CSS0028862 Camellia sinensis var. sinensis HOM05D006260 ORTHO05D007860 2.8e-65 252.3 178 74.7
Nitab4.5_0000257g0210 Nicotiana tabacum HOM05D006260 ORTHO05D007860 2.8e-65 252.3 179 76.0
CAN.G1341.6 Capsicum annuum HOM05D006260 ORTHO05D007860 3.6e-65 251.9 179 77.1
MBI14_g10729_MAGBIO Magnolia biondii HOM05D006260 ORTHO05D007860 3.6e-65 251.9 178 74.7
COL.COLO4_14462 Corchorus olitorius HOM05D006260 ORTHO05D007860 4.7e-65 251.5 178 75.8
Phvul.009G234400 Phaseolus vulgaris HOM05D006260 ORTHO05D007860 6.2e-65 251.1 180 76.1
A03p59290 Brassica napus HOM05D006260 ORTHO05D007860 8.1e-65 250.8 178 71.9
Medtr2g038390 Medicago truncatula HOM05D006260 ORTHO05D007860 1.1e-64 250.4 173 75.7
Rhsim01G0114100 Rhododendron simsii HOM05D006260 ORTHO05D007860 1.4e-64 250.0 181 73.5
vmacro20799 Vaccinium macrocarpon HOM05D006260 ORTHO05D007860 1.4e-64 250.0 178 73.6
C01p09330 Brassica napus HOM05D006260 ORTHO05D007860 1.8e-64 249.6 178 70.8
BolC1t00921H Brassica oleracea HOM05D006260 ORTHO05D007860 1.8e-64 249.6 178 70.8
Nitab4.5_0009368g0010 Nicotiana tabacum HOM05D006260 ORTHO05D007860 2.4e-64 249.2 179 74.9
C07p57300 Brassica napus HOM05D006260 ORTHO05D007860 3.1e-64 248.8 173 72.8
BolC7t46199H Brassica oleracea HOM05D006260 ORTHO05D007860 3.1e-64 248.8 173 73.4
Hma1.2p1_0478F.1_g161140 Hydrangea macrophylla HOM05D006260 ORTHO05D007860 3.1e-64 248.8 178 75.3
Lj6g0019941 Lotus japonicus HOM05D006260 ORTHO05D007860 3.1e-64 248.8 178 75.3
Lj5A660T21 Lonicera japonica HOM05D006260 ORTHO05D007860 5.2e-64 248.1 178 75.8
Lj5A667T13 Lonicera japonica HOM05D006260 ORTHO05D007860 5.2e-64 248.1 178 75.3
SGA_v2.0_scaffold112G31634 Striga asiatica HOM05D006260 ORTHO05D007860 5.2e-64 248.1 151 84.1
Gohir.D04G006600 Gossypium hirsutum HOM05D006260 ORTHO05D007860 2.6e-63 245.7 179 74.9
Gorai.012G008000 Gossypium raimondii HOM05D006260 ORTHO05D007860 2.6e-63 245.7 179 74.9
Gohir.D04G006400 Gossypium hirsutum HOM05D006260 ORTHO05D007860 3.4e-63 245.4 179 74.9
Gorai.012G007800 Gossypium raimondii HOM05D006260 ORTHO05D007860 3.4e-63 245.4 179 74.9
Gohir.A05G408800 Gossypium hirsutum HOM05D006260 ORTHO05D007860 9.9e-63 243.8 179 74.9
Ca_02129_v3 Cicer arietinum L. HOM05D006260 ORTHO05D007860 1.3e-62 243.4 151 82.1
Gohir.A05G409000 Gossypium hirsutum HOM05D006260 ORTHO05D007860 1.7e-62 243.0 179 73.7
DCAR_018008 Daucus carota HOM05D006260 ORTHO05D007860 8.4e-62 240.7 153 80.4
Lsat_1_v5_gn_7_55181 Lactuca sativa HOM05D006260 ORTHO05D007860 1.1e-61 240.4 153 79.1
Manes.06G017400 Manihot esculenta HOM05D006260 ORTHO05D007860 1.1e-61 240.4 150 82.0
Ah.14g085330 Amaranthus hybridus HOM05D006260 ORTHO05D007860 1.4e-61 240.0 176 72.7
SHI03067 Sapria himalayana HOM05D006260 ORTHO05D007860 1.4e-61 240.0 157 77.1
Ah.09g228540 Amaranthus hybridus HOM05D006260 ORTHO05D007860 1.9e-61 239.6 178 70.8
CDE07G0891 Ceratophyllum demersum HOM05D006260 ORTHO05D007860 3.2e-61 238.8 152 79.6
TAR383G0359 Trochodendron aralioides HOM05D006260 ORTHO05D007860 4.2e-61 238.4 177 74.0
ATR0580G108 Amborella trichopoda HOM05D006260 ORTHO05D007860 2.7e-60 235.7 178 69.7
FAN17G2269 Fragaria x ananassa HOM05D006260 ORTHO05D007860 2.7e-60 235.7 155 81.9
Sc18g0003820 Simmondsia chinensis HOM05D006260 ORTHO05D007860 4.6e-60 235.0 175 72.0
CiPaw.07G199300 Carya illinoinensis HOM05D006260 ORTHO05D007860 6.0e-60 234.6 149 81.9
AUR62027428 Chenopodium quinoa HOM05D006260 ORTHO05D007860 6.0e-60 234.6 144 81.9
Aqoxy7G02900 Aquilegia oxysepala HOM05D006260 ORTHO05D007860 7.8e-60 234.2 169 75.1
Peaxi162Scf00421g00071 Petunia axillaris HOM05D006260 ORTHO05D007860 1.0e-59 233.8 166 75.3
HanXRQChr09g0245351 Helianthus annuus HOM05D006260 ORTHO05D007860 1.7e-59 233.0 153 77.1
AT2G19340 Arabidopsis thaliana HOM05D006260 ORTHO05D007860 7.3e-58 227.6 164 70.7
HPP92_027392 Vanilla planifolia HOM05D006260 ORTHO05D007860 1.3e-57 226.9 174 66.1
Zm00001eb169590 Zea mays HOM05D006260 ORTHO05D007860 2.6e-55 219.2 153 71.9
Zm00001eb112720 Zea mays HOM05D006260 ORTHO05D007860 1.3e-54 216.9 180 66.1
QL02p064675 Quercus lobata HOM05D006260 ORTHO05D007860 4.9e-54 214.9 162 70.4
CDE06G1002 Ceratophyllum demersum HOM05D006260 ORTHO05D007860 1.1e-53 213.8 137 78.1
Sed0019929 Sechium edule HOM05D006260 ORTHO05D007860 1.4e-53 213.4 146 78.1
Mapoly0039s0076 Marchantia polymorpha HOM05D006260 ORTHO05D007860 1.9e-53 213.0 152 71.7
Cpa.g.sc115.60 Carica papaya HOM05D006260 ORTHO05D007860 4.2e-53 211.8 118 93.2
PSO170G1526 Papaver somniferum HOM05D006260 ORTHO05D007860 2.3e-51 206.1 129 79.1
Sabra06G0054000 Salix brachista HOM05D006260 ORTHO05D007860 3.3e-50 202.2 120 85.8
TAR626G1894 Trochodendron aralioides HOM05D006260 ORTHO05D007860 4.3e-50 201.8 120 87.5
SEGI_37789 Sequoiadendron giganteum HOM05D006260 ORTHO05D007860 3.7e-49 198.7 159 63.5
SMO329G0049 Selaginella moellendorffii HOM05D006260 ORTHO05D007860 1.5e-47 193.4 154 66.2
CBR_g37526 Chara braunii HOM05D006260 ORTHO05D007860 9.9e-47 190.7 153 60.8
Sabra18G0114100 Salix brachista HOM05D006260 ORTHO05D007860 3.2e-45 185.7 108 88.9
AUR62031268 Chenopodium quinoa HOM05D006260 ORTHO05D007860 1.2e-44 183.7 106 85.8
EL10Ac8g19294 Beta vulgaris HOM05D006260 ORTHO05D007860 1.6e-44 183.3 106 85.8
ECA240G0773 Erigeron canadensis HOM05D006260 ORTHO05D007860 2.7e-44 182.6 121 75.2
AagrBONN_evm.TU.Sc2ySwM_362.1716 Anthoceros agrestis HOM05D006260 ORTHO05D007860 5.1e-43 178.3 152 57.2
BcaNung00497 Brassica carinata HOM05D006260 ORTHO05D007860 3.3e-42 175.6 129 72.1
Pp3c5_8110 Physcomitrium patens HOM05D006260 ORTHO05D007860 1.1e-40 170.6 131 62.6
Lj5C609T1 Lonicera japonica HOM05D006260 ORTHO05D007860 4.8e-33 145.2 91 79.1
Cre12.g528150 Chlamydomonas reinhardtii HOM05D006260 ORTHO05D007860 1.1e-26 124.0 123 46.3
TWI39G0723 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 4.1e-16 89.0 106 50.9
MD13G1241300 Malus domestica HOM05D006260 ORTHO05D249159 3.6e-12 75.9 120 50.0


User provided reference genes

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