Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 0.0e+00 1114.4 567 100.0
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 2.4e-280 968.4 565 87.1
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 1.6e-260 902.5 566 81.6
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 1.8e-259 899.0 566 80.4
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.1e-255 885.6 594 76.6
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 1.0e-233 813.5 553 72.7
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 6.0e-231 804.3 528 75.0
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 6.0e-231 804.3 561 72.9
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 2.5e-229 798.9 554 72.7
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 4.8e-228 794.7 537 73.2
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 2.5e-224 782.3 562 70.5
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 3.0e-222 775.4 554 70.8
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 8.2e-220 767.3 528 72.9
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 1.7e-217 759.6 550 70.4
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 8.5e-217 757.3 529 72.2
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 4.2e-216 755.0 551 69.5
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 1.4e-214 750.0 546 68.9
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 3.9e-214 748.4 562 68.1
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 2.6e-213 745.7 523 70.7
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 3.3e-213 745.3 525 70.3
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 1.7e-212 743.0 562 67.3
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 1.7e-212 743.0 561 66.7
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 8.2e-212 740.7 567 65.8
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 2.4e-211 739.2 548 68.8
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 3.1e-211 738.8 529 71.5
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 4.1e-211 738.4 548 68.8
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 1.5e-210 736.5 560 67.7
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 3.5e-210 735.3 572 65.2
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 7.7e-210 734.2 561 66.1
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 7.7e-210 734.2 548 68.4
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 1.7e-209 733.0 520 71.5
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 6.5e-209 731.1 541 68.0
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 6.5e-209 731.1 559 66.0
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 8.5e-209 730.7 533 68.3
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 1.4e-208 729.9 563 65.2
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 5.5e-208 728.0 533 67.9
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 6.1e-207 724.5 571 65.0
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 6.1e-207 724.5 580 65.0
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 8.0e-207 724.2 561 65.8
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 3.9e-206 721.8 547 66.9
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 5.2e-206 721.5 535 67.5
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 6.7e-206 721.1 532 69.2
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 1.5e-205 719.9 518 68.7
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 3.3e-205 718.8 523 68.5
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 9.7e-205 717.2 553 65.6
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.7e-204 716.5 510 68.2
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 6.3e-204 714.5 568 64.8
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 3.1e-203 712.2 471 73.9
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 1.4e-198 696.8 604 59.8
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 3.0e-198 695.7 552 63.4
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 1.5e-197 693.3 548 67.2
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 9.7e-197 690.6 523 65.8
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 1.3e-196 690.3 562 62.1
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 3.7e-196 688.7 529 64.3
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 4.8e-196 688.3 560 62.9
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 1.4e-195 686.8 533 65.7
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 1.4e-195 686.8 501 67.9
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 3.1e-195 685.6 490 69.6
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 3.5e-194 682.2 487 69.0
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 5.9e-194 681.4 550 61.6
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.0e-193 680.6 533 64.2
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 6.5e-193 677.9 540 63.1
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 1.1e-192 677.2 504 64.9
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 2.1e-191 672.9 531 63.1
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 1.0e-190 670.6 532 61.3
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 1.4e-190 670.2 555 60.2
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 9.8e-189 664.1 519 63.6
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 6.3e-188 661.4 532 63.3
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 9.1e-187 657.5 612 56.5
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 1.6e-186 656.8 531 63.1
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 3.5e-186 655.6 475 68.4
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 4.5e-186 655.2 490 67.3
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 6.6e-185 651.4 605 55.0
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 2.0e-181 639.8 419 75.2
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.4e-181 638.6 554 61.2
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 7.5e-181 637.9 488 66.8
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 9.8e-181 637.5 531 63.1
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 2.8e-180 636.0 528 60.2
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 1.2e-178 630.6 555 58.9
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 5.0e-177 625.2 490 65.5
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 1.4e-174 617.1 515 58.4
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 7.5e-173 611.3 545 60.9
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 1.9e-171 606.7 567 55.6
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 1.9e-171 606.7 501 61.7
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 4.1e-171 605.5 522 58.2
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 1.5e-168 597.0 525 58.1
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.5e-168 597.0 450 66.7
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 1.1e-166 590.9 554 57.4
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 6.8e-166 588.2 543 55.4
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 2.0e-165 586.6 497 58.8
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.6e-165 586.3 528 56.2
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.4e-164 581.6 567 53.6
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 2.4e-163 579.7 471 60.1
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.8e-162 574.7 506 57.3
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 1.1e-160 570.9 492 58.7
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 5.6e-160 568.5 430 67.9
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 2.1e-159 566.6 492 57.7
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 1.8e-158 563.5 497 55.9
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.7e-156 557.0 452 61.5
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 3.0e-153 546.2 454 63.7
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 7.3e-152 541.6 520 54.6
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.1e-151 540.0 536 55.6
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.2e-151 538.5 506 53.0
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 8.1e-151 538.1 556 54.7
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 4.0e-150 535.8 499 54.3
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 4.3e-144 515.8 493 54.2
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.3e-143 514.2 481 55.5
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 4.0e-142 509.2 339 77.3
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 3.0e-137 493.0 508 50.6
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 1.1e-136 491.1 398 61.1
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 1.5e-136 490.7 495 51.7
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 3.3e-136 489.6 394 59.6
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 4.3e-136 489.2 555 46.8
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 9.6e-136 488.0 327 72.8
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 2.1e-135 486.9 423 57.0
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 6.2e-135 485.3 496 52.0
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 7.1e-131 471.9 500 48.8
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 1.3e-127 461.1 394 62.4
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 9.0e-126 454.9 323 68.7
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 5.8e-125 452.2 344 67.2
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.2e-122 444.5 460 50.9
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.6e-122 444.1 296 74.3
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 3.5e-114 416.4 329 63.2
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 4.3e-112 409.5 414 53.9
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 5.7e-112 409.1 328 62.8
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 1.8e-110 404.1 330 61.8
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 7.7e-109 398.7 641 36.7
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.5e-107 393.7 343 54.8
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 3.2e-107 393.3 444 50.7
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 6.5e-92 342.4 455 44.6
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 5.2e-89 332.8 226 65.9
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 3.3e-88 330.1 227 74.9
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 7.5e-88 328.9 227 74.9
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 8.5e-84 315.5 217 64.5
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.5e-83 313.9 275 54.5
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 1.4e-73 281.6 612 31.7
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.2e-72 278.5 348 42.8
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 4.3e-67 260.0 189 68.8
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 4.7e-66 256.5 176 70.5
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 4.7e-66 256.5 161 75.2
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 8.9e-65 252.3 262 50.8
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 9.8e-64 248.8 235 55.3
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 1.7e-63 248.1 148 79.7
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 6.4e-63 246.1 470 34.5
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 2.7e-53 214.2 165 67.3
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 1.3e-52 211.8 159 61.6
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.3e-52 211.1 196 50.5
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.4e-48 196.8 157 61.1
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 4.6e-45 186.8 188 55.9
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.1e-41 175.6 118 68.6
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.3e-41 174.5 131 64.9
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 9.2e-38 162.5 198 43.4
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 1.6e-37 161.8 237 40.1
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.1e-36 156.8 171 42.1
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.6e-34 151.8 142 57.7
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.1e-34 149.4 107 64.5
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.0e-24 118.2 74 70.3
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 8.1e-18 96.3 66 66.7
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.1e-17 94.4 85 43.5
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.9e-14 85.1 73 54.8
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 3.5e-13 80.9 73 56.2
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 8.1e-10 69.7 54 63.0


User provided reference genes

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