Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G060800 Prunus persica HOM05D005047 ORTHO05D006540 3.4e-115 418.3 206 100.0
RcHm_v2.0_Chr4g0396911 Rosa chinensis HOM05D005047 ORTHO05D006540 1.1e-102 376.7 203 88.7
Ciclev10005905m.g Citrus clementina HOM05D005047 ORTHO05D006540 2.0e-99 365.9 199 86.4
CiPaw.01G126600 Carya illinoinensis HOM05D005047 ORTHO05D006540 7.6e-99 364.0 204 83.8
PGR142G1511 Punica granatum HOM05D005047 ORTHO05D006540 1.7e-98 362.8 203 84.7
Aa31LG9G3930 Aethionema arabicum HOM05D005047 ORTHO05D006540 2.9e-98 362.1 196 86.7
Thecc.04G211900 Theobroma cacao HOM05D005047 ORTHO05D006540 2.9e-98 362.1 199 86.4
CANSAT78G0753 Cannabis sativa HOM05D005047 ORTHO05D006540 3.2e-97 358.6 200 85.0
CANSAT78G2209 Cannabis sativa HOM05D005047 ORTHO05D006540 3.2e-97 358.6 200 85.0
GSVIVG01029046001 Vitis vinifera HOM05D005047 ORTHO05D006540 3.2e-97 358.6 205 83.9
Thhalv10026260m.g Eutrema salsugineum HOM05D005047 ORTHO05D006540 7.1e-97 357.5 200 83.5
Gorai.006G219600 Gossypium raimondii HOM05D005047 ORTHO05D006540 9.3e-97 357.1 199 83.9
BcaB02g08656 Brassica carinata HOM05D005047 ORTHO05D006540 1.2e-96 356.7 197 85.3
AL7G42780 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 1.6e-96 356.3 201 83.6
AT4G13720 Arabidopsis thaliana HOM05D005047 ORTHO05D006540 2.1e-96 355.9 195 85.6
Haze_11554 Corylus avellana HOM05D005047 ORTHO05D006540 2.1e-96 355.9 195 85.6
Sp7g11500 Schrenkiella parvula HOM05D005047 ORTHO05D006540 2.1e-96 355.9 199 83.9
Gohir.A09G202200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 2.7e-96 355.5 202 82.7
Gohir.D09G196200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 2.7e-96 355.5 199 83.9
Medtr1g047390 Medicago truncatula HOM05D005047 ORTHO05D006540 3.5e-96 355.1 201 85.1
Duzib212G0386 Durio zibethinus HOM05D005047 ORTHO05D006540 4.6e-96 354.8 203 83.7
PSO782G5131 Papaver somniferum HOM05D005047 ORTHO05D006540 4.6e-96 354.8 198 84.3
Psat6g048720 Pisum sativum HOM05D005047 ORTHO05D006540 4.6e-96 354.8 202 84.2
CSS0002501 Camellia sinensis var. sinensis HOM05D005047 ORTHO05D006540 7.9e-96 354.0 201 83.6
Eucgr.H00094 Eucalyptus grandis HOM05D005047 ORTHO05D006540 7.9e-96 354.0 201 83.6
C04p42210 Brassica napus HOM05D005047 ORTHO05D006540 1.0e-95 353.6 202 84.2
COL.COLO4_34082 Corchorus olitorius HOM05D005047 ORTHO05D006540 1.0e-95 353.6 203 84.2
Lalb_Chr01g0010841 Lupinus albus HOM05D005047 ORTHO05D006540 1.0e-95 353.6 204 83.3
Lj6g0004838 Lotus japonicus HOM05D005047 ORTHO05D006540 1.3e-95 353.2 200 84.5
Glyma.10G125100 Glycine max HOM05D005047 ORTHO05D006540 1.8e-95 352.8 201 83.6
Phvul.007G236950 Phaseolus vulgaris HOM05D005047 ORTHO05D006540 1.8e-95 352.8 201 82.6
PSO478G4795 Papaver somniferum HOM05D005047 ORTHO05D006540 2.3e-95 352.4 198 84.3
Cc03_g07220 Coffea canephora HOM05D005047 ORTHO05D006540 3.0e-95 352.1 195 85.1
Sed0007809 Sechium edule HOM05D005047 ORTHO05D006540 3.0e-95 352.1 201 84.1
THA.LOC104808728 Tarenaya hassleriana HOM05D005047 ORTHO05D006540 3.0e-95 352.1 195 85.6
Ca_11862_v3 Cicer arietinum L. HOM05D005047 ORTHO05D006540 8.7e-95 350.5 201 84.1
Dinv38281 Davidia involucrata HOM05D005047 ORTHO05D006540 8.7e-95 350.5 201 84.1
Glyma.20G077400 Glycine max HOM05D005047 ORTHO05D006540 1.5e-94 349.7 201 83.1
Potri.003G175800 Populus trichocarpa HOM05D005047 ORTHO05D006540 1.5e-94 349.7 195 84.1
Potri.001G052400 Populus trichocarpa HOM05D005047 ORTHO05D006540 1.9e-94 349.4 193 85.5
AL5G12130 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 3.3e-94 348.6 200 82.0
TWI73G0442 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 1.3e-93 346.7 202 80.7
HanXRQChr01g0022691 Helianthus annuus HOM05D005047 ORTHO05D006540 2.1e-93 345.9 193 85.5
Sc13g0002770 Simmondsia chinensis HOM05D005047 ORTHO05D006540 2.8e-93 345.5 199 81.9
Sopen09g034350 Solanum pennellii HOM05D005047 ORTHO05D006540 2.8e-93 345.5 206 80.6
BcaC02g09395 Brassica carinata HOM05D005047 ORTHO05D006540 3.7e-93 345.1 197 84.3
BraA04t16537Z Brassica rapa HOM05D005047 ORTHO05D006540 4.8e-93 344.7 203 83.3
ECA248G2813 Erigeron canadensis HOM05D005047 ORTHO05D006540 8.1e-93 344.0 197 83.2
EL10Ac3g06787 Beta vulgaris HOM05D005047 ORTHO05D006540 1.1e-92 343.6 198 82.3
Cpa.g.sc59.91 Carica papaya HOM05D005047 ORTHO05D006540 1.4e-92 343.2 196 82.1
PGSC0003DMG400029615 Solanum tuberosum HOM05D005047 ORTHO05D006540 1.4e-92 343.2 197 82.2
A04p08470 Brassica napus HOM05D005047 ORTHO05D006540 1.8e-92 342.8 198 84.3
BolC4t25799H Brassica oleracea HOM05D005047 ORTHO05D006540 1.8e-92 342.8 198 84.3
Solyc09g091420.4 Solanum lycopersicum HOM05D005047 ORTHO05D006540 4.0e-92 341.7 206 79.6
CsaV3_3G011290 Cucumis sativus L. HOM05D005047 ORTHO05D006540 1.2e-91 340.1 190 85.8
Nitab4.5_0010267g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 1.2e-91 340.1 206 79.6
Migut.N00337 Erythranthe guttata HOM05D005047 ORTHO05D006540 7.6e-91 337.4 202 81.7
Sabra03G0128700 Salix brachista HOM05D005047 ORTHO05D006540 1.1e-89 333.6 211 78.2
FAN12G1457 Fragaria x ananassa HOM05D005047 ORTHO05D006540 1.9e-89 332.8 203 81.8
Lj6A611T47 Lonicera japonica HOM05D005047 ORTHO05D006540 2.4e-89 332.4 196 82.7
FAN07G0410 Fragaria x ananassa HOM05D005047 ORTHO05D006540 1.6e-88 329.7 203 81.3
Hma1.2p1_0903F.1_g235140 Hydrangea macrophylla HOM05D005047 ORTHO05D006540 2.1e-88 329.3 201 80.1
TAR633G1642 Trochodendron aralioides HOM05D005047 ORTHO05D006540 2.1e-88 329.3 206 78.6
CDE04G3429 Ceratophyllum demersum HOM05D005047 ORTHO05D006540 1.3e-87 326.6 188 80.9
Os10g0457500 Oryza sativa ssp. japonica HOM05D005047 ORTHO05D006540 1.3e-87 326.6 198 78.3
Zm00001eb046670 Zea mays HOM05D005047 ORTHO05D006540 1.8e-87 326.2 192 80.7
SalBow3G2150 Salvia bowleyana HOM05D005047 ORTHO05D006540 7.4e-86 320.9 227 72.2
SGA_v2.0_scaffold2G00831 Striga asiatica HOM05D005047 ORTHO05D006540 7.4e-86 320.9 231 70.6
HPP92_015205 Vanilla planifolia HOM05D005047 ORTHO05D006540 3.7e-85 318.5 200 74.5
vmacro00514 Vaccinium macrocarpon HOM05D005047 ORTHO05D006540 5.3e-84 314.7 199 78.9
unitig_749.g13975 Utricularia gibba HOM05D005047 ORTHO05D006540 1.2e-83 313.5 207 74.9
Hund19253 Selenicereus undatus HOM05D005047 ORTHO05D006540 3.4e-83 312.0 204 77.5
TPR.G10100 Trifolium pratense HOM05D005047 ORTHO05D006540 3.4e-83 312.0 172 86.0
VMungo0720G0344 Vigna mungo HOM05D005047 ORTHO05D006540 4.5e-83 311.6 253 64.8
Manes.03G152700 Manihot esculenta HOM05D005047 ORTHO05D006540 6.5e-82 307.8 201 73.6
AUR62032663 Chenopodium quinoa HOM05D005047 ORTHO05D006540 8.4e-82 307.4 200 76.5
Manes.15G048800 Manihot esculenta HOM05D005047 ORTHO05D006540 8.4e-82 307.4 198 72.7
Lsat_1_v5_gn_0_4860 Lactuca sativa HOM05D005047 ORTHO05D006540 4.2e-81 305.1 237 67.1
ClCG05G003600 Citrullus lanatus HOM05D005047 ORTHO05D006540 9.3e-81 303.9 192 79.2
Mapoly0026s0018 Marchantia polymorpha HOM05D005047 ORTHO05D006540 9.3e-81 303.9 195 73.8
Ah.13g075240 Amaranthus hybridus HOM05D005047 ORTHO05D006540 2.1e-80 302.8 202 73.8
SMO367G0232 Selaginella moellendorffii HOM05D005047 ORTHO05D006540 5.7e-78 294.7 203 71.9
Carub.0007s2874 Capsella rubella HOM05D005047 ORTHO05D006540 4.8e-77 291.6 155 88.4
Nitab4.5_0010728g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 4.8e-77 291.6 200 72.5
Aa31LG9G3940 Aethionema arabicum HOM05D005047 ORTHO05D006540 1.1e-76 290.4 212 67.5
Pp3c16_19640 Physcomitrium patens HOM05D005047 ORTHO05D006540 1.8e-76 289.7 196 71.4
Dinv29555 Davidia involucrata HOM05D005047 ORTHO05D006540 6.9e-76 287.7 200 76.0
AUR62035305 Chenopodium quinoa HOM05D005047 ORTHO05D006540 1.1e-73 280.4 263 58.6
Oeu006715.2 Olea europaea HOM05D005047 ORTHO05D006540 1.9e-73 279.6 209 68.9
AagrBONN_evm.TU.Sc2ySwM_344.3277 Anthoceros agrestis HOM05D005047 ORTHO05D006540 2.7e-72 275.8 188 70.2
CAN.G500.97 Capsicum annuum HOM05D005047 ORTHO05D006540 4.3e-70 268.5 157 80.3
Nn3g19880 Nelumbo nucifera HOM05D005047 ORTHO05D006540 1.1e-68 263.8 201 67.7
Atru.chr4.1794 Acer truncatum HOM05D005047 ORTHO05D006540 1.1e-65 253.8 134 86.6
ATR0088G035 Amborella trichopoda HOM05D005047 ORTHO05D006540 5.1e-63 245.0 140 80.7
Peaxi162Scf00047g01312 Petunia axillaris HOM05D005047 ORTHO05D006540 5.1e-63 245.0 204 61.8
Actinidia37393 Actinidia chinensis HOM05D005047 ORTHO05D006540 6.7e-63 244.6 210 63.3
MCO04G006 Micromonas commoda HOM05D005047 ORTHO05D006540 8.8e-63 244.2 177 65.5
Cre02.g095089 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 2.2e-61 239.6 186 61.3
SHI24117 Sapria himalayana HOM05D005047 ORTHO05D006540 4.1e-60 235.3 191 60.2
Aqoxy2G03810 Aquilegia oxysepala HOM05D005047 ORTHO05D006540 3.4e-59 232.3 200 61.0
Zm00001eb377030 Zea mays HOM05D005047 ORTHO05D006540 1.0e-58 230.7 152 69.7
MBI07_g19553_MAGBIO Magnolia biondii HOM05D005047 ORTHO05D006540 6.5e-58 228.0 214 59.3
MD13G1230900 Malus domestica HOM05D005047 ORTHO05D006540 1.8e-55 219.9 113 91.2
PRCOL_00006994 Prasinoderma coloniale HOM05D005047 ORTHO05D006540 8.8e-55 217.6 180 58.9
arahy.Tifrunner.gnm1.ann1.BK86JE Arachis hypogaea HOM05D005047 ORTHO05D006540 1.1e-54 217.2 197 60.9
Rhsim09G0049500 Rhododendron simsii HOM05D005047 ORTHO05D006540 9.7e-54 214.2 135 77.0
CARHR219510 Cardamine hirsuta HOM05D005047 ORTHO05D006540 1.3e-50 203.8 109 85.3
Cfa024488 Carpinus fangiana HOM05D005047 ORTHO05D006540 2.2e-50 203.0 179 55.3
Zm00001eb086240 Zea mays HOM05D005047 ORTHO05D006540 1.9e-49 199.9 116 77.6
QL06p023224 Quercus lobata HOM05D005047 ORTHO05D006540 3.2e-49 199.1 110 80.9
Zm00001eb102100 Zea mays HOM05D005047 ORTHO05D006540 4.2e-49 198.7 152 63.8
arahy.Tifrunner.gnm1.ann1.0X932T Arachis hypogaea HOM05D005047 ORTHO05D006540 8.0e-48 194.5 132 69.7
Sed0007961 Sechium edule HOM05D005047 ORTHO05D006540 4.8e-45 185.3 180 58.9
Cre13.g568950 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 2.7e-43 179.5 171 52.0
Carub.0007s2873 Capsella rubella HOM05D005047 ORTHO05D006540 3.6e-40 169.1 92 84.8
FvH4_4g05750 Fragaria vesca HOM05D005047 ORTHO05D006540 3.0e-39 166.0 89 92.1
QL06p023220 Quercus lobata HOM05D005047 ORTHO05D006540 2.0e-38 163.3 85 91.8
MELO3C031602.2 Cucumis melo HOM05D005047 ORTHO05D006540 2.0e-35 153.3 81 90.1
DCAR_002273 Daucus carota HOM05D005047 ORTHO05D006540 2.0e-35 153.3 85 87.1
MSTRG.21943 Avicennia marina HOM05D005047 ORTHO05D006540 1.0e-34 151.0 86 83.7
Zm00001eb177140 Zea mays HOM05D005047 ORTHO05D006540 6.5e-34 148.3 99 68.7
TAR636G1612 Trochodendron aralioides HOM05D005047 ORTHO05D006540 2.5e-33 146.4 93 78.5
TWI09G0343 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 1.2e-32 144.1 97 71.1
Zm00001eb180620 Zea mays HOM05D005047 ORTHO05D006540 1.8e-28 130.2 84 69.0
Zm00001eb425490 Zea mays HOM05D005047 ORTHO05D006540 8.6e-26 121.3 74 70.3
FAN17G1156 Fragaria x ananassa HOM05D005047 ORTHO05D006540 3.3e-25 119.4 68 80.9
SEGI_09208 Sequoiadendron giganteum HOM05D005047 ORTHO05D006540 2.5e-17 93.2 64 68.8
MCO12G133 Micromonas commoda HOM05D005047 ORTHO05D049269 3.3e-17 92.8 196 32.1
Sabra01G0036900 Salix brachista HOM05D005047 ORTHO05D006540 7.3e-17 91.7 48 83.3
Medtr1g047400 Medicago truncatula HOM05D005047 ORTHO05D006540 1.5e-14 84.0 60 71.7
CBR_g49288 Chara braunii HOM05D005047 ORTHO05D006540 3.4e-14 82.8 54 70.4
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 1.4e-12 77.4 43 88.4
TPR.G40557 Trifolium pratense HOM05D005047 ORTHO05D006540 1.6e-11 73.9 46 80.4
FvH4_6g44040 Fragaria vesca HOM05D005047 ORTHO05D006540 1.0e-10 71.2 39 82.1
Glyma.12G173400 Glycine max HOM05D005047 ORTHO05D006540 5.0e-10 68.9 94 50.0
PRCOL_00003939 Prasinoderma coloniale HOM05D005047 ORTHO05D049269 1.9e-09 67.0 227 27.3
FvH4_5g32911 Fragaria vesca HOM05D005047 ORTHO05D006540 2.5e-09 66.6 33 90.9
FAN01G1709 Fragaria x ananassa HOM05D005047 ORTHO05D006540 3.3e-09 66.2 39 76.9
Duzib268G0889 Durio zibethinus HOM05D005047 ORTHO05D006540 7.3e-09 65.1 86 43.0
arahy.Tifrunner.gnm1.ann1.FRRS2Q Arachis hypogaea HOM05D005047 ORTHO05D084578 1.2e-08 64.3 68 50.0
EL10Ac7g17560 Beta vulgaris HOM05D005047 ORTHO05D006373 2.8e-08 63.2 37 78.4
EL10Ac6g14438 Beta vulgaris HOM05D005047 ORTHO05D006540 1.4e-07 60.8 37 75.7
FAN26G2286 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.3e-07 60.1 34 82.4
FAN27G1012 Fragaria x ananassa HOM05D029863 ORTHO05D006540 8.9e-07 58.2 30 86.7
CsaV3_6G019130 Cucumis sativus L. HOM05D005047 ORTHO05D006540 2.6e-06 56.6 45 66.7
Ca_28777_v3 Cicer arietinum L. HOM05D005047 ORTHO05D147776 7.5e-06 55.1 138 31.2


User provided reference genes

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