Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 0.0e+00 1963.0 1018 100.0
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 0.0e+00 1625.1 1019 84.0
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 0.0e+00 1463.0 1022 75.5
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1446.0 1033 73.9
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1446.0 1022 74.3
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1441.4 1022 73.7
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1340.9 1048 69.2
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 0.0e+00 1255.4 1013 65.5
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 0.0e+00 1239.9 1064 62.6
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 0.0e+00 1239.6 971 66.5
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 0.0e+00 1186.8 1016 62.2
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 0.0e+00 1184.1 1019 61.8
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 0.0e+00 1177.2 1023 61.0
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 0.0e+00 1175.6 951 64.4
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 0.0e+00 1170.2 1023 61.9
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 0.0e+00 1164.4 1017 61.4
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 0.0e+00 1162.1 1014 59.7
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 0.0e+00 1151.3 1033 59.7
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 0.0e+00 1145.6 1022 61.0
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 0.0e+00 1142.5 1012 58.6
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 0.0e+00 1117.4 976 60.1
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 0.0e+00 1112.8 1015 59.5
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 0.0e+00 1110.5 1018 57.1
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 0.0e+00 1106.7 1018 57.1
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 0.0e+00 1103.6 1017 57.6
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 0.0e+00 1098.2 981 58.4
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 0.0e+00 1098.2 1065 55.7
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 0.0e+00 1087.0 1028 56.7
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 7.6e-309 1063.9 913 62.5
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 9.0e-302 1040.4 1017 54.8
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 1.8e-297 1026.2 1049 53.1
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 1.6e-295 1019.6 713 74.2
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 2.4e-294 1015.8 893 60.1
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 2.9e-292 1008.8 1015 52.5
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 8.4e-292 1007.3 1022 53.6
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 7.2e-291 1004.2 976 54.9
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 2.7e-290 1002.3 1079 52.0
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 3.3e-288 995.3 1025 53.3
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 2.5e-283 979.2 1001 53.2
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 2.5e-283 979.2 1025 52.0
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 3.2e-283 978.8 1046 51.8
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 6.1e-282 974.5 1032 50.7
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 1.4e-281 973.4 1031 52.8
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 1.8e-281 973.0 1014 51.5
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 5.7e-280 968.0 984 52.5
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 4.1e-278 961.8 1019 52.5
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 1.5e-277 959.9 985 51.8
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 2.6e-277 959.1 902 57.4
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 6.5e-276 954.5 1016 51.2
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 8.5e-276 954.1 1016 51.4
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 1.2e-274 950.3 977 53.7
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 2.7e-274 949.1 1056 49.1
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 3.6e-274 948.7 983 51.7
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 3.3e-272 942.2 1008 51.4
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 2.9e-268 929.1 1026 49.6
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 2.5e-267 926.0 1018 49.8
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 4.2e-267 925.2 1007 50.9
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 6.5e-260 901.4 909 53.2
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 1.9e-259 899.8 994 49.2
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 9.4e-259 897.5 1026 48.6
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 1.6e-258 896.7 911 53.2
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 1.4e-257 893.6 974 51.2
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 6.3e-255 884.8 1001 47.8
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 5.4e-254 881.7 1000 47.1
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 1.2e-253 880.6 840 56.2
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 7.7e-253 877.9 1004 46.5
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 1.1e-251 874.0 1009 47.1
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 3.6e-250 869.0 1009 47.0
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 3.4e-248 862.4 1006 46.4
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 4.4e-248 862.1 910 51.2
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 9.8e-248 860.9 1029 46.9
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 1.7e-247 860.1 1009 46.6
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 1.7e-247 860.1 1015 47.4
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 1.8e-246 856.7 1022 48.7
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 1.8e-246 856.7 1017 46.2
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 1.8e-246 856.7 1021 45.2
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 2.0e-245 853.2 778 57.1
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 5.9e-245 851.7 1010 45.4
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 5.0e-244 848.6 925 50.4
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 1.0e-241 840.9 950 48.9
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 3.0e-241 839.3 921 48.6
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 6.8e-241 838.2 1014 47.9
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 2.4e-238 829.7 1007 45.0
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 7.8e-237 824.7 888 49.3
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 1.9e-235 820.1 917 50.2
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 2.9e-231 806.2 1039 46.0
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 7.0e-230 801.6 1034 44.4
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 1.7e-228 797.0 1035 45.7
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 9.8e-224 781.2 829 51.6
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 3.2e-222 776.2 1018 44.3
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 5.4e-222 775.4 668 59.9
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 7.3e-219 765.0 979 43.5
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 4.3e-211 739.2 914 45.1
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 9.9e-192 674.9 951 44.0
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 3.3e-187 659.8 1026 38.4
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 4.3e-187 659.4 679 51.5
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 9.6e-179 631.7 836 42.8
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 2.5e-174 617.1 1047 38.4
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 4.3e-171 606.3 905 41.4
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 4.1e-145 520.0 1019 33.2
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 4.7e-141 506.5 913 35.7
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 1.8e-71 275.4 1030 25.9
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.9e-65 255.4 644 30.3
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 1.5e-62 245.7 270 47.4
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 8.8e-55 219.9 179 62.0
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 9.7e-54 216.5 341 39.0
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 1.5e-51 209.1 677 27.0
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 3.2e-41 174.9 678 25.1
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 7.2e-41 173.7 152 60.5
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 7.2e-25 120.6 136 44.9
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 3.0e-23 115.2 884 22.5
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 1.7e-21 109.4 635 23.1
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 1.6e-16 92.8 117 42.7
Nitab4.5_0005468g0040 Nicotiana tabacum HOM05D001280 ORTHO05D008432 1.2e-08 66.6 106 34.0
FAN04G1956 Fragaria x ananassa HOM05D006492 ORTHO05D008432 3.6e-08 65.1 84 47.6
BcaC07g36900 Brassica carinata HOM05D006492 ORTHO05D008432 4.7e-08 64.7 79 41.8
Cfa022935 Carpinus fangiana HOM05D000902 ORTHO05D018943 4.7e-08 64.7 92 46.7
Gohir.D06G107600 Gossypium hirsutum HOM05D001986 ORTHO05D002283 2.0e-06 59.3 64 51.6
Gohir.D01G124101 Gossypium hirsutum HOM05D021756 ORTHO05D018943 2.6e-06 58.9 76 44.7
PGSC0003DMG400029639 Solanum tuberosum HOM05D006492 ORTHO05D035178 5.8e-06 57.8 46 63.0


User provided reference genes

Program Settings