Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 3.3e-122 441.8 237 100.0
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 2.6e-87 325.9 252 74.2
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 6.7e-75 284.6 250 69.6
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 8.8e-75 284.3 255 70.6
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 1.5e-74 283.5 251 69.7
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.5e-74 283.5 250 69.2
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 5.7e-74 281.6 251 69.3
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 9.7e-74 280.8 250 69.2
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 2.6e-66 256.1 228 65.4
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 1.7e-62 243.4 228 62.3
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 5.7e-58 228.4 238 58.4
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 3.7e-57 225.7 220 61.4
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 1.1e-56 224.2 226 59.7
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 5.4e-56 221.9 220 60.5
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 7.0e-56 221.5 235 58.3
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 2.0e-55 219.9 224 59.8
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 2.7e-55 219.5 220 60.0
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 3.8e-54 215.7 218 60.1
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 8.6e-54 214.5 218 59.6
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 5.5e-53 211.8 214 57.0
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 3.6e-52 209.1 191 60.7
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 6.1e-52 208.4 232 52.6
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 8.0e-52 208.0 233 55.4
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 8.0e-52 208.0 224 56.7
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 3.4e-50 202.6 243 51.9
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 1.3e-49 200.7 229 53.7
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 1.7e-49 200.3 226 53.1
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 2.2e-49 199.9 209 56.0
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 2.8e-49 199.5 225 56.4
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 9.2e-48 194.5 229 52.8
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 9.2e-48 194.5 218 55.5
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 5.9e-47 191.8 236 50.8
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 7.8e-47 191.4 214 55.1
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 2.3e-46 189.9 213 51.6
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 2.9e-46 189.5 227 52.4
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 3.9e-46 189.1 228 51.3
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 1.5e-45 187.2 217 51.6
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 1.5e-45 187.2 194 58.2
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 1.9e-45 186.8 213 52.6
Lj6g0023034 Lotus japonicus HOM05D005697 ORTHO05D006951 2.5e-45 186.4 192 57.3
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 9.5e-45 184.5 249 46.6
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 9.5e-45 184.5 222 53.2
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 9.5e-45 184.5 220 50.0
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 6.1e-44 181.8 190 57.9
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 1.8e-43 180.3 217 50.2
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 3.1e-43 179.5 213 50.2
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 4.0e-43 179.1 220 50.0
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 5.2e-43 178.7 222 49.1
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 6.8e-43 178.3 217 48.4
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 8.9e-43 177.9 224 48.2
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 8.9e-43 177.9 224 51.3
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 1.5e-42 177.2 197 52.8
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 2.6e-42 176.4 219 51.6
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 4.4e-42 175.6 213 46.9
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 7.5e-42 174.9 216 49.5
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 2.9e-41 172.9 245 45.7
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 3.7e-41 172.6 225 50.2
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 4.9e-41 172.2 229 48.0
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 6.4e-41 171.8 219 49.3
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 7.0e-40 168.3 224 46.4
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 1.2e-39 167.5 220 48.6
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 1.2e-39 167.5 216 48.1
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 2.0e-39 166.8 228 46.9
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 2.7e-39 166.4 216 48.1
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 1.3e-38 164.1 178 55.6
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 2.3e-38 163.3 249 44.6
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 2.3e-38 163.3 231 43.3
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 2.3e-38 163.3 225 46.7
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 3.0e-38 162.9 220 47.3
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 5.0e-38 162.2 213 45.1
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 6.6e-38 161.8 204 48.0
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 1.1e-37 161.0 246 45.9
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 3.3e-37 159.5 204 48.0
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 2.8e-36 156.4 230 46.1
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 2.8e-36 156.4 217 46.5
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 1.4e-35 154.1 216 46.8
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 1.8e-35 153.7 216 42.6
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 1.5e-34 150.6 204 45.6
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 2.0e-34 150.2 230 44.8
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 4.9e-33 145.6 222 43.2
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 6.4e-33 145.2 234 41.9
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 1.4e-32 144.1 230 43.0
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 3.2e-32 142.9 190 48.9
Actinidia39942 Actinidia chinensis HOM05D005697 ORTHO05D006951 1.3e-30 137.5 179 52.0
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 1.3e-30 137.5 228 42.1
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 8.6e-30 134.8 227 40.5
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 1.2e-28 131.0 217 44.7
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 1.6e-28 130.6 98 69.4
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 2.8e-28 129.8 218 43.1
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 3.6e-28 129.4 114 63.2
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 8.1e-28 128.3 174 50.6
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 1.8e-27 127.1 225 41.3
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 3.1e-27 126.3 166 47.6
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 2.6e-26 123.2 232 39.2
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 7.6e-26 121.7 201 42.8
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 8.3e-25 118.2 232 39.2
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 8.3e-25 118.2 232 39.2
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 1.4e-24 117.5 223 43.0
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 5.4e-24 115.5 232 38.8
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 5.4e-24 115.5 210 41.0
SGA_v2.0_scaffold31G12607 Striga asiatica HOM05D005697 ORTHO05D006951 1.2e-23 114.4 216 36.6
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 2.7e-23 113.2 232 40.9
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 3.5e-23 112.8 226 41.2
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 4.6e-23 112.5 223 42.2
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 4.6e-23 112.5 223 42.2
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 4.6e-23 112.5 223 42.2
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 7.8e-23 111.7 194 42.8
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 1.3e-22 110.9 232 40.1
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 3.9e-22 109.4 216 38.9
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 1.5e-21 107.5 246 39.4
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 2.5e-21 106.7 116 50.9
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 3.3e-21 106.3 106 55.7
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 4.3e-21 105.9 211 42.7
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 7.3e-21 105.1 164 42.7
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 1.2e-20 104.4 209 39.7
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 1.2e-20 104.4 98 57.1
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 4.7e-20 102.4 211 40.8
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 3.1e-19 99.8 210 41.0
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 1.5e-18 97.4 176 36.4
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 7.6e-18 95.1 221 37.6
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 1.3e-17 94.4 116 50.9
unitig_26.g9545 Utricularia gibba HOM05D005697 ORTHO05D006951 2.2e-17 93.6 222 32.0
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 2.9e-17 93.2 116 50.0
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 4.9e-17 92.4 112 50.9
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 1.1e-16 91.3 217 36.4
PGSC0003DMG400011585 Solanum tuberosum HOM05D005697 ORTHO05D006951 9.3e-16 88.2 164 40.9
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 1.6e-15 87.4 232 34.1
Nitab4.5_0000451g0070 Nicotiana tabacum HOM05D005697 ORTHO05D006951 2.1e-15 87.0 141 44.0
CDE08G0630 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 2.0e-10 70.5 153 33.3
BraA04t16558Z Brassica rapa HOM05D005697 ORTHO05D006951 2.2e-09 67.0 114 40.4
Nitab4.5_0000867g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 2.4e-08 63.5 142 36.6


User provided reference genes

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