Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 1.0e-39 166.4 90 100.0
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 8.0e-37 156.8 90 92.2
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 8.9e-36 153.3 90 88.9
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 6.8e-20 100.5 90 64.4
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 3.4e-19 98.2 90 64.4
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 3.4e-19 98.2 87 59.8
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 5.8e-19 97.4 87 60.9
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 9.9e-19 96.7 90 63.3
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 1.3e-18 96.3 88 61.4
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 1.7e-18 95.9 82 58.5
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 6.4e-18 94.0 90 57.8
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 8.4e-18 93.6 87 60.9
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 1.4e-17 92.8 90 60.0
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 1.9e-17 92.4 88 58.0
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 2.4e-17 92.0 91 63.7
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 3.2e-17 91.7 88 58.0
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 3.2e-17 91.7 90 60.0
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 1.2e-16 89.7 90 55.6
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 2.1e-16 89.0 90 60.0
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 2.1e-16 89.0 91 61.5
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 2.1e-16 89.0 90 58.9
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 2.1e-16 89.0 90 58.9
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 7.8e-16 87.0 89 52.8
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 1.5e-14 82.8 90 54.4
SpUn0225_0010 Schrenkiella parvula HOM05D005842 ORTHO05D007077 3.3e-14 81.6 108 47.2
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 5.6e-14 80.9 89 50.6
Cfa014832 Carpinus fangiana HOM05D005842 ORTHO05D007077 7.3e-14 80.5 112 50.0
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 1.6e-13 79.3 81 50.6
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 2.8e-13 78.6 88 51.1
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 8.1e-13 77.0 88 50.0
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 8.1e-13 77.0 88 50.0
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 8.1e-13 77.0 98 55.1
C03p53480 Brassica napus HOM05D005842 ORTHO05D007077 1.4e-12 76.3 72 55.6
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 1.8e-12 75.9 87 49.4
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 4.0e-12 74.7 82 51.2
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 4.0e-12 74.7 72 52.8
Dinv29781 Davidia involucrata HOM05D005842 ORTHO05D007077 5.3e-12 74.3 105 51.4
PSO210G3477 Papaver somniferum HOM05D005842 ORTHO05D007077 5.3e-12 74.3 82 48.8
PSO210G4408 Papaver somniferum HOM05D005842 ORTHO05D007077 5.3e-12 74.3 82 48.8
BcaB03g16079 Brassica carinata HOM05D005842 ORTHO05D007077 6.9e-12 73.9 108 44.4
PSO764G0017 Papaver somniferum HOM05D005842 ORTHO05D007077 6.9e-12 73.9 82 48.8
Aa31LG9G4090 Aethionema arabicum HOM05D005842 ORTHO05D007077 1.2e-11 73.2 119 41.2
Nn1g03040 Nelumbo nucifera HOM05D005842 ORTHO05D007077 2.0e-11 72.4 87 48.3
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 3.4e-11 71.6 87 50.6
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 3.4e-11 71.6 87 50.6
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 3.4e-11 71.6 87 50.6
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 3.4e-11 71.6 87 50.6
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 3.4e-11 71.6 87 50.6
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 3.4e-11 71.6 87 50.6
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 3.4e-11 71.6 87 50.6
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 3.4e-11 71.6 87 50.6
BcaC02g09413 Brassica carinata HOM05D005842 ORTHO05D007077 4.4e-11 71.2 108 43.5
BcaC02g09414 Brassica carinata HOM05D005842 ORTHO05D007077 4.4e-11 71.2 108 43.5
BcaC02g09415 Brassica carinata HOM05D005842 ORTHO05D007077 4.4e-11 71.2 108 43.5
CsaV3_2G012270 Cucumis sativus L. HOM05D005842 ORTHO05D007077 4.4e-11 71.2 97 47.4
Rhsim09G0044300 Rhododendron simsii HOM05D005842 ORTHO05D007077 7.6e-11 70.5 42 83.3
TAR362G0228 Trochodendron aralioides HOM05D005842 ORTHO05D007077 7.6e-11 70.5 87 46.0
CANSAT78G1849 Cannabis sativa HOM05D005842 ORTHO05D007077 9.9e-11 70.1 112 42.9
Lalb_Chr01g0011321 Lupinus albus HOM05D005842 ORTHO05D007077 9.9e-11 70.1 84 50.0
Peaxi162Scf00164g00112 Petunia axillaris HOM05D005842 ORTHO05D007077 1.3e-10 69.7 71 50.7
A04p08620 Brassica napus HOM05D005842 ORTHO05D007077 1.7e-10 69.3 109 44.0
BraA04t16556Z Brassica rapa HOM05D005842 ORTHO05D007077 1.7e-10 69.3 109 44.0
CANSAT78G1061 Cannabis sativa HOM05D005842 ORTHO05D007077 3.8e-10 68.2 104 42.3
PGSC0003DMG404001548 Solanum tuberosum HOM05D005842 ORTHO05D007077 3.8e-10 68.2 90 48.9
Atru.chr13.2235 Acer truncatum HOM05D005842 ORTHO05D007077 6.4e-10 67.4 74 50.0
Thhalv10026478m.g Eutrema salsugineum HOM05D005842 ORTHO05D007077 6.4e-10 67.4 108 41.7
Solyc09g091040.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 6.4e-10 67.4 90 46.7
MBI10_g16785_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 8.4e-10 67.0 89 46.1
MBI10_g16786_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 8.4e-10 67.0 89 46.1
PSO384G4311 Papaver somniferum HOM05D005842 ORTHO05D007077 8.4e-10 67.0 85 44.7
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 1.1e-09 66.6 87 49.4
arahy.Tifrunner.gnm1.ann1.LRUD7W Arachis hypogaea HOM05D005842 ORTHO05D007077 1.4e-09 66.2 87 46.0
Sopen09g034020 Solanum pennellii HOM05D005842 ORTHO05D007077 1.4e-09 66.2 90 46.7
arahy.Tifrunner.gnm1.ann1.JU0LD9 Arachis hypogaea HOM05D005842 ORTHO05D007077 1.9e-09 65.9 87 47.1
arahy.Tifrunner.gnm1.ann1.Q9KDDQ Arachis hypogaea HOM05D005842 ORTHO05D007077 1.9e-09 65.9 87 46.0
Oeu007544.1 Olea europaea HOM05D005842 ORTHO05D007077 2.4e-09 65.5 66 51.5
Psat6g108960 Pisum sativum HOM05D005842 ORTHO05D007077 2.4e-09 65.5 140 34.3
BcaC02g09416 Brassica carinata HOM05D005842 ORTHO05D007077 3.2e-09 65.1 93 44.1
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 3.2e-09 65.1 87 46.0
BcaB04g17686 Brassica carinata HOM05D005842 ORTHO05D007077 4.2e-09 64.7 108 40.7
arahy.Tifrunner.gnm1.ann1.GMD4I9 Arachis hypogaea HOM05D005842 ORTHO05D007077 5.4e-09 64.3 87 46.0
ATR0787G056 Amborella trichopoda HOM05D005842 ORTHO05D007077 7.1e-09 63.9 89 43.8
BcaC07g37350 Brassica carinata HOM05D005842 ORTHO05D007077 7.1e-09 63.9 108 39.8
BcaB06g26603 Brassica carinata HOM05D005842 ORTHO05D007077 9.3e-09 63.5 72 50.0
Medtr1g045980 Medicago truncatula HOM05D005842 ORTHO05D007077 9.3e-09 63.5 125 36.0
PSO266G0009 Papaver somniferum HOM05D005842 ORTHO05D007077 9.3e-09 63.5 85 43.5
PSO266G0028 Papaver somniferum HOM05D005842 ORTHO05D007077 9.3e-09 63.5 85 43.5
PSO384G5008 Papaver somniferum HOM05D005842 ORTHO05D007077 1.6e-08 62.8 85 42.4
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 2.1e-08 62.4 72 48.6
A08p06740 Brassica napus HOM05D005842 ORTHO05D007077 2.7e-08 62.0 109 40.4
BolC8t47646H Brassica oleracea HOM05D005842 ORTHO05D007077 2.7e-08 62.0 109 40.4
BraA08t32692Z Brassica rapa HOM05D005842 ORTHO05D007077 2.7e-08 62.0 109 40.4
Sed0010218 Sechium edule HOM05D005842 ORTHO05D007077 2.7e-08 62.0 83 43.4
C08p07940 Brassica napus HOM05D005842 ORTHO05D007077 3.5e-08 61.6 45 68.9
Lalb_Chr19g0128561 Lupinus albus HOM05D005842 ORTHO05D007077 3.5e-08 61.6 64 51.6
PGR142G0529 Punica granatum HOM05D005842 ORTHO05D007077 3.5e-08 61.6 90 46.7
AL7G43170 Arabidopsis lyrata HOM05D005842 ORTHO05D007077 4.6e-08 61.2 108 39.8
A07p08140 Brassica napus HOM05D005842 ORTHO05D007077 4.6e-08 61.2 89 43.8
C07p12280 Brassica napus HOM05D005842 ORTHO05D007077 4.6e-08 61.2 89 43.8
BolC7t41695H Brassica oleracea HOM05D005842 ORTHO05D007077 4.6e-08 61.2 89 43.8
BraA07t28597Z Brassica rapa HOM05D005842 ORTHO05D007077 4.6e-08 61.2 89 43.8
Aqoxy5G00093 Aquilegia oxysepala HOM05D005842 ORTHO05D007077 7.8e-08 60.5 85 45.9
C04p42360 Brassica napus HOM05D005842 ORTHO05D007077 1.3e-07 59.7 116 40.5
CARHR219200 Cardamine hirsuta HOM05D005842 ORTHO05D007077 1.3e-07 59.7 108 39.8
MELO3C023400.2 Cucumis melo HOM05D008630 ORTHO05D010727 2.3e-07 58.9 88 48.9
Nn1g03039 Nelumbo nucifera HOM05D005842 ORTHO05D007077 2.3e-07 58.9 85 44.7
AT4G13560 Arabidopsis thaliana HOM05D005842 ORTHO05D007077 3.0e-07 58.5 108 38.9
Lalb_Chr03g0036861 Lupinus albus HOM05D005842 ORTHO05D007077 3.9e-07 58.2 63 49.2
Sed0006099 Sechium edule HOM05D005842 ORTHO05D007077 3.9e-07 58.2 87 41.4
Sopen05g031940 Solanum pennellii HOM05D005842 ORTHO05D007077 3.9e-07 58.2 89 39.3
TWI18G0017 Tripterygium wilfordii HOM05D008630 ORTHO05D010727 3.9e-07 58.2 81 46.9
Nn1g03042 Nelumbo nucifera HOM05D005842 ORTHO05D007077 5.1e-07 57.8 87 42.5
Sed0009523 Sechium edule HOM05D008630 ORTHO05D010727 5.1e-07 57.8 79 50.6
Solyc05g053450.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 5.1e-07 57.8 89 39.3
Nitab4.5_0000867g0010 Nicotiana tabacum HOM05D000404 ORTHO05D001765 6.6e-07 57.4 89 42.7
MELO3C023065.2 Cucumis melo HOM05D005842 ORTHO05D007077 1.1e-06 56.6 80 43.8
Peaxi162Scf01007g00004 Petunia axillaris HOM05D005842 ORTHO05D007077 3.3e-06 55.1 89 40.4
Eucgr.F02549 Eucalyptus grandis HOM05D008630 ORTHO05D010727 4.3e-06 54.7 78 47.4
Potri.001G172900 Populus trichocarpa HOM05D008630 ORTHO05D010727 5.6e-06 54.3 78 44.9
SalBow2G2733 Salvia bowleyana HOM05D005842 ORTHO05D007077 5.6e-06 54.3 86 38.4
Carub.0007s2898 Capsella rubella HOM05D005842 ORTHO05D007077 7.3e-06 53.9 108 37.0


User provided reference genes

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