Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G051700 Prunus persica HOM05D013250 ORTHO05D006541 2.4e-139 498.8 251 100.0
MD16G1230200 Malus domestica HOM05D013250 ORTHO05D006541 4.3e-80 302.0 265 69.1
RcHm_v2.0_Chr4g0396051 Rosa chinensis HOM05D013250 ORTHO05D006541 3.0e-49 199.5 247 54.3
FAN22G0719 Fragaria x ananassa HOM05D013250 ORTHO05D006541 1.0e-44 184.5 260 48.5
FvH4_4g05130 Fragaria vesca HOM05D013250 ORTHO05D006541 1.7e-39 167.2 252 47.2
FAN12G1247 Fragaria x ananassa HOM05D013250 ORTHO05D006541 9.1e-38 161.4 255 46.7
TWI09G1485 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 1.6e-26 124.0 247 40.5
TWI09G0902 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 1.2e-24 117.9 233 37.8
Manes.03G156600 Manihot esculenta HOM05D008171 ORTHO05D006541 2.2e-23 113.6 232 38.8
FAN17G2546 Fragaria x ananassa HOM05D013250 ORTHO05D006541 3.7e-23 112.8 218 41.7
Cpa.g.sc59.27 Carica papaya HOM05D008171 ORTHO05D006541 1.8e-22 110.5 226 37.2
Actinidia31699 Actinidia chinensis HOM05D008171 ORTHO05D006541 3.5e-21 106.3 221 35.3
Gohir.A11G241700 Gossypium hirsutum HOM05D008171 ORTHO05D006541 2.3e-20 103.6 226 35.0
Gorai.007G269300 Gossypium raimondii HOM05D008171 ORTHO05D006541 4.3e-19 99.4 247 33.2
Gohir.D11G251100 Gossypium hirsutum HOM05D008171 ORTHO05D006541 5.6e-19 99.0 247 33.2
Ca_04035_v3 Cicer arietinum L. HOM05D008729 ORTHO05D006541 9.5e-19 98.2 231 35.1
MD13G1018300 Malus domestica HOM05D008171 ORTHO05D006541 4.7e-18 95.9 245 37.6
Glyma.18G253500 Glycine max HOM05D008729 ORTHO05D006541 1.0e-17 94.7 241 34.9
Potri.004G028100 Populus trichocarpa HOM05D008171 ORTHO05D006541 8.9e-17 91.7 251 33.5
Lj1g0024023 Lotus japonicus HOM05D008729 ORTHO05D006541 1.2e-16 91.3 153 39.2
Sabra04G0016000 Salix brachista HOM05D008171 ORTHO05D006541 1.2e-16 91.3 251 33.9
Prupe.1G335500 Prunus persica HOM05D008171 ORTHO05D006541 2.0e-16 90.5 234 39.3
Dinv29788 Davidia involucrata HOM05D008171 ORTHO05D006541 3.4e-16 89.7 231 34.2
Haze_11490 Corylus avellana HOM05D008171 ORTHO05D006541 7.5e-16 88.6 261 35.6
COL.COLO4_08914 Corchorus olitorius HOM05D008171 ORTHO05D006541 9.8e-16 88.2 254 31.9
FAN07G2840 Fragaria x ananassa HOM05D004513 ORTHO05D005459 1.3e-15 87.8 137 45.3
Dinv43748 Davidia involucrata HOM05D008729 ORTHO05D006541 4.9e-15 85.9 238 32.4
Thecc.04G268400 Theobroma cacao HOM05D008171 ORTHO05D006541 4.9e-15 85.9 254 31.5
Atru.chr3.807 Acer truncatum HOM05D008171 ORTHO05D006541 6.4e-15 85.5 182 35.2
ClCG09G011900 Citrullus lanatus HOM05D008171 ORTHO05D006541 8.3e-15 85.1 258 33.7
Rhsim06G0142400 Rhododendron simsii HOM05D008729 ORTHO05D006541 1.8e-14 84.0 220 34.5
SGA_v2.0_scaffold31G12622 Striga asiatica HOM05D014524 ORTHO05D006541 2.4e-14 83.6 249 32.9
FAN07G0121 Fragaria x ananassa HOM05D022272 ORTHO05D006541 7.0e-14 82.0 120 46.7
THA.LOC104826159 Tarenaya hassleriana HOM05D008171 ORTHO05D006541 9.2e-14 81.6 241 33.2
Duzib177G0581 Durio zibethinus HOM05D008171 ORTHO05D006541 1.6e-13 80.9 275 31.3
QL06p021862 Quercus lobata HOM05D008171 ORTHO05D006541 1.6e-13 80.9 254 35.0
PGR119G2083 Punica granatum HOM05D008729 ORTHO05D006541 2.7e-13 80.1 233 36.1
AT2G32235 Arabidopsis thaliana HOM05D008171 ORTHO05D006541 4.6e-13 79.3 241 30.7
Cc03_g06490 Coffea canephora HOM05D008171 ORTHO05D006541 4.6e-13 79.3 222 32.0
FvH4_4g33320 Fragaria vesca HOM05D022272 ORTHO05D006541 4.6e-13 79.3 126 42.1
Cc00_g01630 Coffea canephora HOM05D008729 ORTHO05D006541 7.8e-13 78.6 110 46.4
Sopen05g005780 Solanum pennellii HOM05D008171 ORTHO05D006541 1.0e-12 78.2 112 39.3
BcaB02g10481 Brassica carinata HOM05D008171 ORTHO05D006541 1.3e-12 77.8 226 30.1
CANSAT78G0015 Cannabis sativa HOM05D008171 ORTHO05D006541 1.3e-12 77.8 248 35.5
Thhalv10016999m.g Eutrema salsugineum HOM05D008171 ORTHO05D006541 1.7e-12 77.4 239 31.0
FAN17G0494 Fragaria x ananassa HOM05D022272 ORTHO05D006541 1.7e-12 77.4 148 37.8
C04p17400 Brassica napus HOM05D008171 ORTHO05D006541 2.3e-12 77.0 242 29.8
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 2.3e-12 77.0 242 29.8
Migut.N00307 Erythranthe guttata HOM05D014524 ORTHO05D006541 2.3e-12 77.0 132 40.2
FAN12G2236 Fragaria x ananassa HOM05D022272 ORTHO05D006541 2.3e-12 77.0 124 46.0
SGA_v2.0_scaffold577G53017 Striga asiatica HOM05D014524 ORTHO05D006541 5.0e-12 75.9 240 32.5
A05p13010 Brassica napus HOM05D008171 ORTHO05D006541 6.6e-12 75.5 161 31.7
AL4G27600 Arabidopsis lyrata HOM05D008171 ORTHO05D006541 8.6e-12 75.1 242 31.4
RcHm_v2.0_Chr4g0442521 Rosa chinensis HOM05D013250 ORTHO05D006541 8.6e-12 75.1 69 52.2
MSTRG.14227 Avicennia marina HOM05D014524 ORTHO05D006541 1.1e-11 74.7 227 31.3
FAN22G1062 Fragaria x ananassa HOM05D022272 ORTHO05D006541 1.9e-11 73.9 123 43.9
VMungo1383G3710 Vigna mungo HOM05D008729 ORTHO05D006541 1.9e-11 73.9 219 35.2
COL.COLO4_36427 Corchorus olitorius HOM05D008171 ORTHO05D006541 4.3e-11 72.8 274 31.0
Eucgr.F04204 Eucalyptus grandis HOM05D008729 ORTHO05D006541 5.6e-11 72.4 168 36.9
CiPaw.01G175900 Carya illinoinensis HOM05D008171 ORTHO05D006541 7.3e-11 72.0 104 41.3
Rhsim07G0050800 Rhododendron simsii HOM05D008171 ORTHO05D006541 7.3e-11 72.0 256 32.0
BraA05t20241Z Brassica rapa HOM05D008171 ORTHO05D006541 9.5e-11 71.6 239 28.9
DCAR_002271 Daucus carota HOM05D008729 ORTHO05D006541 1.2e-10 71.2 255 31.4
Phvul.008G026200 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 1.2e-10 71.2 219 32.9
Cfa014809 Carpinus fangiana HOM05D008171 ORTHO05D006541 2.1e-10 70.5 258 31.8
CsaV3_3G049130 Cucumis sativus L. HOM05D008171 ORTHO05D006541 2.1e-10 70.5 252 29.0
arahy.Tifrunner.gnm1.ann1.YJLF6P Arachis hypogaea HOM05D008729 ORTHO05D006541 2.8e-10 70.1 305 29.2
PGSC0003DMG400000820 Solanum tuberosum HOM05D008171 ORTHO05D006541 2.8e-10 70.1 152 34.9
Potri.018G147100 Populus trichocarpa HOM05D008729 ORTHO05D006541 3.6e-10 69.7 212 30.2
Aa31LG5G4300 Aethionema arabicum HOM05D008171 ORTHO05D006541 4.7e-10 69.3 246 29.7
arahy.Tifrunner.gnm1.ann1.R8XUDN Arachis hypogaea HOM05D008729 ORTHO05D006541 4.7e-10 69.3 294 28.6
Nitab4.5_0004705g0050 Nicotiana tabacum HOM05D008171 ORTHO05D006541 8.0e-10 68.6 146 31.5
Sabra18G0128500 Salix brachista HOM05D008171 ORTHO05D006541 2.3e-09 67.0 214 31.3
Sed0013719 Sechium edule HOM05D008171 ORTHO05D006541 3.1e-09 66.6 204 32.4
TPR.G6386 Trifolium pratense HOM05D008729 ORTHO05D006541 3.1e-09 66.6 185 33.0
Phvul.008G045500 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 8.9e-09 65.1 219 31.5
SalBow8G4971 Salvia bowleyana HOM05D014524 ORTHO05D006541 1.5e-08 64.3 261 27.2
Psat3g195600 Pisum sativum HOM05D008729 ORTHO05D006541 4.4e-08 62.8 174 34.5
Oeu061870.1 Olea europaea HOM05D008729 ORTHO05D006541 5.8e-08 62.4 113 34.5
Ciclev10005715m.g Citrus clementina HOM05D008171 ORTHO05D006541 7.5e-08 62.0 194 35.6
COL.COLO4_37412 Corchorus olitorius HOM05D008171 ORTHO05D006541 1.3e-07 61.2 53 50.9
Nitab4.5_0009780g0020 Nicotiana tabacum HOM05D008171 ORTHO05D006541 1.3e-07 61.2 121 33.9
Lalb_Chr03g0040281 Lupinus albus HOM05D008729 ORTHO05D006541 1.7e-07 60.8 257 27.2
Medtr4g072710 Medicago truncatula HOM05D008729 ORTHO05D006541 2.2e-07 60.5 268 29.9
Glyma.09G242100 Glycine max HOM05D008729 ORTHO05D006541 3.7e-07 59.7 134 37.3
Medtr4g072520 Medicago truncatula HOM05D008729 ORTHO05D006541 3.7e-07 59.7 266 29.7
DCAR_027373 Daucus carota HOM05D008171 ORTHO05D006541 6.4e-07 58.9 242 28.5
TPR.G16999 Trifolium pratense HOM05D008729 ORTHO05D006541 1.1e-06 58.2 210 31.9
CAN.G184.75 Capsicum annuum HOM05D001868 ORTHO05D009153 1.9e-06 57.4 110 32.7
Medtr5g069720 Medicago truncatula HOM05D008729 ORTHO05D006541 2.4e-06 57.0 286 29.4
Atru.chr6.2064 Acer truncatum HOM05D008171 ORTHO05D006541 5.4e-06 55.8 178 34.3
Actinidia32333 Actinidia chinensis HOM05D008171 ORTHO05D006541 5.4e-06 55.8 216 26.9
TWI73G1043 Tripterygium wilfordii HOM05D008729 ORTHO05D006541 7.0e-06 55.5 145 34.5


User provided reference genes

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