Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G049800 Prunus persica HOM05D002652 ORTHO05D002739 8.1e-87 323.6 147 100.0
Prupe.1G049700 Prunus persica HOM05D002652 ORTHO05D002739 2.2e-47 192.6 137 67.2
Prupe.1G049600 Prunus persica HOM05D002652 ORTHO05D002739 2.6e-40 169.1 137 58.4
CANSAT11G2136 Cannabis sativa HOM05D002652 ORTHO05D002739 5.0e-28 128.3 135 48.1
Dinv29797 Davidia involucrata HOM05D002652 ORTHO05D002739 1.6e-21 106.7 138 43.5
Actinidia39934 Actinidia chinensis HOM05D002652 ORTHO05D002739 5.9e-21 104.8 137 38.7
Potri.010G191400 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.1e-19 100.5 137 39.4
Ciclev10006564m.g Citrus clementina HOM05D002652 ORTHO05D002739 3.3e-19 99.0 133 39.1
HanXRQChr07g0194071 Helianthus annuus HOM05D002652 ORTHO05D002739 7.2e-19 97.8 133 36.1
COL.COLO4_15987 Corchorus olitorius HOM05D002652 ORTHO05D002739 1.6e-18 96.7 134 39.6
GSVIVG01027930001 Vitis vinifera HOM05D002652 ORTHO05D002739 1.6e-18 96.7 135 39.3
COL.COLO4_15902 Corchorus olitorius HOM05D002652 ORTHO05D002739 2.1e-18 96.3 134 39.6
Ciclev10007025m.g Citrus clementina HOM05D002652 ORTHO05D002739 3.6e-18 95.5 135 35.6
Duzib151G0030 Durio zibethinus HOM05D002652 ORTHO05D002739 4.7e-18 95.1 139 36.0
Hma1.2p1_0385F.1_g141620 Hydrangea macrophylla HOM05D002652 ORTHO05D002739 8.0e-18 94.4 134 39.6
Rhsim02G0047400 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.0e-17 94.0 119 41.2
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 1.8e-17 93.2 134 36.6
Oeu020135.1 Olea europaea HOM05D002652 ORTHO05D002739 2.3e-17 92.8 133 37.6
Ciclev10005927m.g Citrus clementina HOM05D002652 ORTHO05D002739 3.0e-17 92.4 133 35.3
Potri.T121000 Populus trichocarpa HOM05D002652 ORTHO05D002739 6.8e-17 91.3 137 35.8
MSTRG.4179 Avicennia marina HOM05D002652 ORTHO05D002739 8.9e-17 90.9 133 36.8
GSVIVG01027929001 Vitis vinifera HOM05D002652 ORTHO05D002739 8.9e-17 90.9 133 36.1
CSS0031417 Camellia sinensis var. sinensis HOM05D002652 ORTHO05D002739 1.2e-16 90.5 137 38.0
Duzib151G0943 Durio zibethinus HOM05D002652 ORTHO05D002739 1.2e-16 90.5 112 42.0
Duzib151G0998 Durio zibethinus HOM05D002652 ORTHO05D002739 1.2e-16 90.5 133 38.3
FvH4_4g04990 Fragaria vesca HOM05D002652 ORTHO05D002739 1.2e-16 90.5 133 36.1
COL.COLO4_15909 Corchorus olitorius HOM05D002652 ORTHO05D002739 1.5e-16 90.1 135 38.5
Thecc.04G266900 Theobroma cacao HOM05D002652 ORTHO05D002739 1.5e-16 90.1 134 36.6
Nn1g00657 Nelumbo nucifera HOM05D002652 ORTHO05D002739 2.0e-16 89.7 140 36.4
Nn1g00658 Nelumbo nucifera HOM05D002652 ORTHO05D002739 4.4e-16 88.6 138 32.6
Hma1.2p1_0042F.1_g025730 Hydrangea macrophylla HOM05D002652 ORTHO05D002739 5.7e-16 88.2 109 44.0
Nn1g00655 Nelumbo nucifera HOM05D002652 ORTHO05D002739 5.7e-16 88.2 138 32.6
CANSAT78G1278 Cannabis sativa HOM05D002652 ORTHO05D002739 7.5e-16 87.8 136 36.8
FAN12G4037 Fragaria x ananassa HOM05D002652 ORTHO05D002739 9.8e-16 87.4 141 36.2
Rhsim02G0044800 Rhododendron simsii HOM05D002652 ORTHO05D002739 9.8e-16 87.4 123 39.0
Aqoxy7G00431 Aquilegia oxysepala HOM05D002652 ORTHO05D002739 1.7e-15 86.7 133 33.1
COL.COLO4_15898 Corchorus olitorius HOM05D002652 ORTHO05D002739 1.7e-15 86.7 133 33.1
COL.COLO4_15907 Corchorus olitorius HOM05D002652 ORTHO05D002739 1.7e-15 86.7 134 35.1
Nn1g00660 Nelumbo nucifera HOM05D002652 ORTHO05D002739 2.2e-15 86.3 138 32.6
Rhsim02G0046000 Rhododendron simsii HOM05D002652 ORTHO05D002739 2.2e-15 86.3 112 39.3
Potri.T121200 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.8e-15 85.9 135 34.8
Potri.T121301 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.8e-15 85.9 135 34.8
COL.COLO4_15901 Corchorus olitorius HOM05D002652 ORTHO05D002739 3.7e-15 85.5 135 35.6
FvH4_4g04980 Fragaria vesca HOM05D002652 ORTHO05D002739 3.7e-15 85.5 135 35.6
Lsat_1_v5_gn_2_104120 Lactuca sativa HOM05D002652 ORTHO05D002739 3.7e-15 85.5 133 32.3
RhsimUnG0101000 Rhododendron simsii HOM05D002652 ORTHO05D002739 4.9e-15 85.1 123 38.2
Oeu059391.1 Olea europaea HOM05D002652 ORTHO05D002739 8.3e-15 84.3 137 32.8
SalBow2G2144 Salvia bowleyana HOM05D000062 ORTHO05D000043 1.1e-14 84.0 134 35.8
vmacro15483 Vaccinium macrocarpon HOM05D002652 ORTHO05D002739 1.1e-14 84.0 123 36.6
Nn1g00661 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.8e-14 83.2 137 32.8
Hma1.2p1_0565F.1_g179480 Hydrangea macrophylla HOM05D002652 ORTHO05D002739 4.1e-14 82.0 134 37.3
FAN17G1721 Fragaria x ananassa HOM05D002652 ORTHO05D002739 5.4e-14 81.6 143 33.6
ECA247G3161 Erigeron canadensis HOM05D002652 ORTHO05D002739 7.0e-14 81.3 133 33.1
Rhsim02G0045100 Rhododendron simsii HOM05D002652 ORTHO05D002739 7.0e-14 81.3 135 35.6
SalBow3G3644 Salvia bowleyana HOM05D002652 ORTHO05D002739 7.0e-14 81.3 133 34.6
Potri.019G029000 Populus trichocarpa HOM05D002652 ORTHO05D002739 9.2e-14 80.9 133 30.1
ECA238G3361 Erigeron canadensis HOM05D000095 ORTHO05D002739 1.2e-13 80.5 133 34.6
QL06p021327 Quercus lobata HOM05D002652 ORTHO05D002739 1.2e-13 80.5 138 29.7
QL08p018841 Quercus lobata HOM05D002652 ORTHO05D002739 1.2e-13 80.5 138 29.7
Potri.019G027440 Populus trichocarpa HOM05D002652 ORTHO05D002739 2.0e-13 79.7 133 30.8
Rhsim02G0046100 Rhododendron simsii HOM05D002652 ORTHO05D002739 2.0e-13 79.7 116 37.9
RhsimUnG0195300 Rhododendron simsii HOM05D002652 ORTHO05D002739 2.0e-13 79.7 136 35.3
FAN10G2095 Fragaria x ananassa HOM05D002652 ORTHO05D002739 2.7e-13 79.3 138 32.6
Cfa014794 Carpinus fangiana HOM05D002652 ORTHO05D002739 3.5e-13 79.0 134 29.9
FAN10G1323 Fragaria x ananassa HOM05D002652 ORTHO05D002739 3.5e-13 79.0 138 32.6
Potri.019G026780 Populus trichocarpa HOM05D002652 ORTHO05D002739 3.5e-13 79.0 133 31.6
Potri.019G027000 Populus trichocarpa HOM05D002652 ORTHO05D002739 4.5e-13 78.6 133 32.3
SalBow2G1631 Salvia bowleyana HOM05D002652 ORTHO05D002739 4.5e-13 78.6 133 33.8
FvH4_4g04850 Fragaria vesca HOM05D002652 ORTHO05D002739 5.9e-13 78.2 143 32.2
FvH4_4g04860 Fragaria vesca HOM05D002652 ORTHO05D002739 5.9e-13 78.2 141 33.3
FAN12G2048 Fragaria x ananassa HOM05D002652 ORTHO05D002739 5.9e-13 78.2 143 32.2
Prupe.1G050000 Prunus persica HOM05D002652 ORTHO05D002739 5.9e-13 78.2 145 33.1
Migut.G00567 Erythranthe guttata HOM05D002652 ORTHO05D002739 7.8e-13 77.8 134 33.6
FAN12G2993 Fragaria x ananassa HOM05D002652 ORTHO05D002739 7.8e-13 77.8 138 31.9
FAN25G0267 Fragaria x ananassa HOM05D002652 ORTHO05D002739 7.8e-13 77.8 135 31.9
Rhsim02G0045000 Rhododendron simsii HOM05D002652 ORTHO05D002739 7.8e-13 77.8 112 39.3
RcHm_v2.0_Chr4g0395551 Rosa chinensis HOM05D002652 ORTHO05D002739 7.8e-13 77.8 138 32.6
RcHm_v2.0_Chr4g0395741 Rosa chinensis HOM05D002652 ORTHO05D002739 7.8e-13 77.8 134 34.3
RcHm_v2.0_Chr4g0395801 Rosa chinensis HOM05D002652 ORTHO05D002739 7.8e-13 77.8 135 35.6
Lsat_1_v5_gn_2_105441 Lactuca sativa HOM05D002652 ORTHO05D002739 1.0e-12 77.4 133 31.6
Potri.019G026900 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.0e-12 77.4 133 31.6
Potri.019G027100 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.0e-12 77.4 133 31.6
CSS0002481 Camellia sinensis var. sinensis HOM05D002652 ORTHO05D002739 1.3e-12 77.0 119 37.0
Cpa.g.sc59.9 Carica papaya HOM05D002652 ORTHO05D002739 1.3e-12 77.0 133 31.6
Migut.N00313 Erythranthe guttata HOM05D002652 ORTHO05D002739 1.3e-12 77.0 137 33.6
Sabra19G0038500 Salix brachista HOM05D002652 ORTHO05D002739 1.3e-12 77.0 133 33.1
Sabra19G0038900 Salix brachista HOM05D002652 ORTHO05D002739 1.7e-12 76.6 133 30.1
RcHm_v2.0_Chr4g0397571 Rosa chinensis HOM05D002652 ORTHO05D002739 2.3e-12 76.3 138 31.9
Sabra11G0121600 Salix brachista HOM05D002652 ORTHO05D002739 2.3e-12 76.3 137 28.5
Manes.15G046400 Manihot esculenta HOM05D002652 ORTHO05D002739 3.8e-12 75.5 135 31.1
Nn5g27876 Nelumbo nucifera HOM05D002652 ORTHO05D002739 3.8e-12 75.5 138 31.9
Potri.019G028800 Populus trichocarpa HOM05D002652 ORTHO05D002739 3.8e-12 75.5 133 30.8
Rhsim02G0047200 Rhododendron simsii HOM05D002652 ORTHO05D002739 3.8e-12 75.5 133 35.3
Potri.019G027200 Populus trichocarpa HOM05D002652 ORTHO05D002739 5.0e-12 75.1 133 30.1
TAR174G0001 Trochodendron aralioides HOM05D002652 ORTHO05D002739 5.0e-12 75.1 133 30.8
Duzib147G0460 Durio zibethinus HOM05D002652 ORTHO05D002739 1.1e-11 73.9 106 39.6
Potri.019G026820 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.1e-11 73.9 133 28.6
RcHm_v2.0_Chr4g0395751 Rosa chinensis HOM05D002652 ORTHO05D002739 1.1e-11 73.9 133 30.1
DCAR_002581 Daucus carota HOM05D002652 ORTHO05D002739 1.5e-11 73.6 113 37.2
Sabra19G0039000 Salix brachista HOM05D002652 ORTHO05D002739 1.5e-11 73.6 133 29.3
TAR365G0384 Trochodendron aralioides HOM05D002652 ORTHO05D002739 1.5e-11 73.6 137 29.9
DCAR_030374 Daucus carota HOM05D002652 ORTHO05D002739 1.9e-11 73.2 113 36.3
FAN17G3082 Fragaria x ananassa HOM05D002652 ORTHO05D002739 1.9e-11 73.2 134 30.6
FAN22G0933 Fragaria x ananassa HOM05D004511 ORTHO05D005348 1.9e-11 73.2 135 31.9
Prupe.1G050100 Prunus persica HOM05D002652 ORTHO05D002739 1.9e-11 73.2 120 34.2
Ciclev10007030m.g Citrus clementina HOM05D002652 ORTHO05D002739 2.5e-11 72.8 134 29.9
Haze_25448 Corylus avellana HOM05D002652 ORTHO05D002739 2.5e-11 72.8 136 31.6
Migut.N00315 Erythranthe guttata HOM05D002652 ORTHO05D002739 2.5e-11 72.8 112 38.4
CARHR219080 Cardamine hirsuta HOM05D002652 ORTHO05D002739 3.3e-11 72.4 133 34.6
COL.COLO4_15900 Corchorus olitorius HOM05D002652 ORTHO05D002739 3.3e-11 72.4 134 33.6
Sabra19G0038800 Salix brachista HOM05D002652 ORTHO05D002739 3.3e-11 72.4 136 30.9
CiPaw.08G106800 Carya illinoinensis HOM05D002652 ORTHO05D002739 4.3e-11 72.0 135 28.9
Sabra19G0035100 Salix brachista HOM05D002652 ORTHO05D002739 4.3e-11 72.0 133 30.1
Sabra19G0035500 Salix brachista HOM05D002652 ORTHO05D002739 4.3e-11 72.0 133 30.1
Sabra19G0038700 Salix brachista HOM05D002652 ORTHO05D002739 4.3e-11 72.0 136 31.6
Cpa.g.sc8968.1 Carica papaya HOM05D002652 ORTHO05D002739 5.6e-11 71.6 130 30.0
MD05G1228500 Malus domestica HOM05D002652 ORTHO05D002739 5.6e-11 71.6 133 31.6
Potri.019G026740 Populus trichocarpa HOM05D002652 ORTHO05D002739 7.3e-11 71.2 133 27.1
Haze_11472 Corylus avellana HOM05D002652 ORTHO05D002739 9.5e-11 70.9 133 30.1
CiPaw.08G106400 Carya illinoinensis HOM05D002652 ORTHO05D002739 1.2e-10 70.5 134 29.1
CiPaw.08G106600 Carya illinoinensis HOM05D002652 ORTHO05D002739 1.6e-10 70.1 134 29.1
FvH4_4g04760 Fragaria vesca HOM05D002652 ORTHO05D045822 1.6e-10 70.1 143 33.6
Nn2g14922 Nelumbo nucifera HOM05D002652 ORTHO05D002739 1.6e-10 70.1 137 31.4
Potri.019G029100 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.6e-10 70.1 133 27.1
Sabra19G0038300 Salix brachista HOM05D002652 ORTHO05D002739 1.6e-10 70.1 136 30.1
Manes.03G158000 Manihot esculenta HOM05D002652 ORTHO05D002739 3.6e-10 68.9 138 26.1
Sabra19G0038400 Salix brachista HOM05D002652 ORTHO05D002739 3.6e-10 68.9 133 25.6
BcaC04g21865 Brassica carinata HOM05D002652 ORTHO05D002739 4.7e-10 68.6 138 31.9
BolC9t55542H Brassica oleracea HOM05D002652 ORTHO05D002739 4.7e-10 68.6 138 31.9
Carub.0007s2911 Capsella rubella HOM05D002652 ORTHO05D002739 4.7e-10 68.6 135 31.1
BcaB07g30971 Brassica carinata HOM05D002652 ORTHO05D002739 8.0e-10 67.8 138 30.4
Nn1g08811 Nelumbo nucifera HOM05D002652 ORTHO05D002739 8.0e-10 67.8 138 29.7
Oeu061866.1 Olea europaea HOM05D002652 ORTHO05D002739 8.0e-10 67.8 100 38.0
Actinidia39935 Actinidia chinensis HOM05D002652 ORTHO05D002739 1.0e-09 67.4 99 38.4
CiPaw.02G106000 Carya illinoinensis HOM05D002652 ORTHO05D002739 1.0e-09 67.4 133 30.1
Sabra19G0035700 Salix brachista HOM05D002652 ORTHO05D002739 1.0e-09 67.4 133 28.6
TAR636G3443 Trochodendron aralioides HOM05D002652 ORTHO05D002739 1.0e-09 67.4 133 30.1
Potri.019G026860 Populus trichocarpa HOM05D002652 ORTHO05D002739 1.8e-09 66.6 133 27.8
TAR636G2313 Trochodendron aralioides HOM05D002652 ORTHO05D002739 1.8e-09 66.6 137 30.7
RcHm_v2.0_Chr4g0395461 Rosa chinensis HOM05D002652 ORTHO05D002739 2.3e-09 66.2 134 30.6
A09p20860 Brassica napus HOM05D002652 ORTHO05D002739 5.2e-09 65.1 134 31.3
BraA09t37688Z Brassica rapa HOM05D002652 ORTHO05D002739 5.2e-09 65.1 134 31.3
DCAR_030375 Daucus carota HOM05D002652 ORTHO05D002739 5.2e-09 65.1 133 30.8
C09p26400 Brassica napus HOM05D002652 ORTHO05D002739 8.9e-09 64.3 138 31.2
Haze_11422 Corylus avellana HOM05D001324 ORTHO05D001220 8.9e-09 64.3 133 29.3
vmacro15484 Vaccinium macrocarpon HOM05D002652 ORTHO05D002739 8.9e-09 64.3 134 31.3
Aa31LG9G4210 Aethionema arabicum HOM05D002652 ORTHO05D002739 1.2e-08 63.9 133 30.8
DCAR_030381 Daucus carota HOM05D002652 ORTHO05D002739 1.5e-08 63.5 83 39.8
TAR636G1048 Trochodendron aralioides HOM05D002652 ORTHO05D002739 1.5e-08 63.5 137 27.7
DCAR_030377 Daucus carota HOM05D002652 ORTHO05D002739 2.0e-08 63.2 133 30.8
Aa31LG7G1660 Aethionema arabicum HOM05D002652 ORTHO05D002739 2.6e-08 62.8 133 30.1
Aa31LG7G1670 Aethionema arabicum HOM05D002652 ORTHO05D002739 2.6e-08 62.8 133 30.1
Nn1g06038 Nelumbo nucifera HOM05D002652 ORTHO05D002739 2.6e-08 62.8 122 29.5
RhsimUnG0058100 Rhododendron simsii HOM05D002652 ORTHO05D002739 2.6e-08 62.8 133 27.8
Oeu011205.1 Olea europaea HOM05D002652 ORTHO05D002739 3.4e-08 62.4 133 29.3
Rhsim02G0046900 Rhododendron simsii HOM05D002652 ORTHO05D002739 5.8e-08 61.6 134 28.4
Atru.chr4.1903 Acer truncatum HOM05D002652 ORTHO05D002739 1.7e-07 60.1 142 27.5
Aa31LG7G1800 Aethionema arabicum HOM05D002652 ORTHO05D002739 1.7e-07 60.1 138 29.7
CiPaw.01G177100 Carya illinoinensis HOM05D002652 ORTHO05D002739 1.7e-07 60.1 136 27.9
CDE06G2142 Ceratophyllum demersum HOM05D040691 ORTHO05D002739 1.7e-07 60.1 129 31.0
RhsimUnG0195100 Rhododendron simsii HOM05D002652 ORTHO05D002739 1.7e-07 60.1 86 40.7
Oeu011207.1 Olea europaea HOM05D002652 ORTHO05D002739 2.2e-07 59.7 133 28.6
DCAR_030376 Daucus carota HOM05D002652 ORTHO05D002739 2.9e-07 59.3 144 27.1
MSTRG.4182 Avicennia marina HOM05D002652 ORTHO05D002739 4.9e-07 58.5 133 27.1
QL09p048770 Quercus lobata HOM05D002652 ORTHO05D002739 6.4e-07 58.2 133 26.3
Rhsim09G0015400 Rhododendron simsii HOM05D002652 ORTHO05D002739 8.3e-07 57.8 92 37.0
MSTRG.4181 Avicennia marina HOM05D002652 ORTHO05D002739 4.1e-06 55.5 111 31.5
MSTRG.4180 Avicennia marina HOM05D002652 ORTHO05D002739 5.4e-06 55.1 134 27.6
FvH4_4g04900 Fragaria vesca HOM05D002652 ORTHO05D002739 5.4e-06 55.1 138 28.3
Actinidia11376 Actinidia chinensis HOM05D002652 ORTHO05D002739 9.2e-06 54.3 135 26.7


User provided reference genes

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