Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 4.3e-304 1047.3 595 100.0
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 2.9e-244 848.6 565 86.2
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 2.0e-232 809.3 570 82.6
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 1.4e-217 760.0 569 79.6
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 5.4e-214 748.0 577 75.9
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 2.9e-207 725.7 522 80.7
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 3.3e-203 712.2 607 72.7
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 2.0e-200 703.0 571 75.0
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 4.4e-200 701.8 577 73.5
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.7e-199 699.9 573 75.0
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 3.8e-199 698.7 488 83.6
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 8.4e-199 697.6 573 74.7
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 1.1e-198 697.2 587 71.6
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 2.8e-194 682.6 579 72.5
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 1.3e-191 673.7 573 72.8
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 1.4e-190 670.2 567 73.7
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 7.1e-190 667.9 572 71.0
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 6.0e-189 664.8 542 73.1
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 3.3e-187 659.1 569 69.6
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 8.1e-186 654.4 566 69.6
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 1.7e-183 646.7 572 69.1
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 1.1e-182 644.0 572 72.2
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 7.1e-182 641.3 545 72.1
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 1.6e-181 640.2 545 72.1
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 2.1e-181 639.8 545 71.9
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 3.5e-181 639.0 547 73.1
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 7.9e-181 637.9 577 67.2
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 7.9e-181 637.9 547 71.1
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 1.8e-180 636.7 567 67.9
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 2.3e-180 636.3 578 69.2
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 4.3e-179 632.1 571 69.4
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 1.1e-177 627.5 569 68.9
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.8e-177 626.7 529 73.5
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 1.2e-176 624.0 575 69.0
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 7.6e-176 621.3 544 71.5
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 1.0e-175 620.9 583 67.9
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 1.6e-173 613.6 562 70.1
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 3.5e-173 612.5 546 70.7
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 3.9e-172 609.0 574 67.8
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.1e-171 607.4 582 66.8
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 1.1e-171 607.4 671 57.4
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 1.9e-171 606.7 590 68.0
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 7.4e-171 604.7 512 70.9
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 9.6e-171 604.4 490 74.1
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 2.4e-169 599.7 574 65.9
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.2e-168 597.4 575 67.1
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 1.5e-168 597.0 571 66.2
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 1.2e-165 587.4 571 65.1
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 5.1e-164 582.0 550 67.1
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 6.7e-164 581.6 596 64.1
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 8.7e-164 581.3 603 63.3
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 3.7e-162 575.9 567 64.4
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 2.6e-160 569.7 553 67.5
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 2.9e-159 566.2 515 65.0
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 2.7e-157 559.7 612 58.8
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 3.9e-156 555.8 497 70.6
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 2.5e-155 553.1 497 69.4
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 3.3e-155 552.7 547 65.3
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 4.3e-155 552.4 578 63.7
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 1.4e-153 547.4 526 63.7
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 6.9e-153 545.0 585 59.5
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 3.4e-152 542.7 481 69.9
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 1.7e-151 540.4 618 56.0
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 2.5e-150 536.6 566 61.7
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 5.5e-150 535.4 550 61.5
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 1.6e-149 533.9 571 62.0
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 5.7e-147 525.4 514 64.6
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 4.8e-146 522.3 598 61.0
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 1.2e-144 517.7 562 62.8
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 3.2e-142 509.6 442 70.8
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 3.2e-142 509.6 567 55.2
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 4.2e-142 509.2 543 56.2
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 3.6e-141 506.1 578 60.7
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 4.7e-141 505.8 551 55.9
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 6.1e-141 505.4 553 62.0
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 3.0e-140 503.1 567 54.5
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 4.0e-140 502.7 476 64.1
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 9.7e-139 498.0 515 61.9
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 1.7e-138 497.3 540 56.9
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 4.8e-138 495.7 541 61.7
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 4.8e-138 495.7 579 59.8
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.1e-137 494.6 537 55.9
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.8e-137 493.8 428 72.7
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 3.5e-136 489.6 582 52.7
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 4.2e-134 482.6 571 53.9
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 3.0e-132 476.5 536 60.8
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 1.5e-131 474.2 442 69.9
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 1.8e-129 467.2 547 54.3
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 5.4e-129 465.7 547 60.9
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 9.1e-129 464.9 546 60.6
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 5.9e-128 462.2 547 58.5
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 7.7e-128 461.8 555 57.5
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 5.0e-127 459.1 547 58.3
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 5.0e-127 459.1 547 58.3
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 4.2e-126 456.1 392 72.7
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 4.7e-125 452.6 498 61.8
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 2.0e-123 447.2 493 55.4
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 7.5e-123 445.3 551 57.5
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 4.9e-122 442.6 447 62.6
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 2.9e-114 416.8 367 65.9
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 6.4e-114 415.6 383 69.2
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 1.1e-102 378.3 357 72.5
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 2.1e-96 357.5 485 56.7
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 5.4e-89 332.8 218 82.1
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 3.1e-84 317.0 218 78.9
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 1.2e-80 305.1 212 74.5
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 1.6e-80 304.7 232 66.4
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 1.5e-67 261.5 212 63.2
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 5.5e-65 253.1 213 62.0
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 7.1e-65 252.7 213 62.9
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 9.3e-65 252.3 222 60.8
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 1.3e-58 231.9 244 53.3
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 5.5e-57 226.5 167 70.1
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 3.5e-56 223.8 335 43.9
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 2.3e-55 221.1 224 65.2
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 2.5e-54 217.6 240 52.5
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 6.5e-50 203.0 184 65.2
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 6.7e-47 193.0 213 53.5
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 3.3e-46 190.7 263 41.8
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 3.1e-44 184.1 615 32.0
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 7.7e-43 179.5 214 47.7
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 3.0e-39 167.5 269 40.1
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 9.1e-36 156.0 275 37.8
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 3.8e-34 150.6 154 62.3
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 1.1e-33 149.1 148 53.4
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 4.2e-33 147.1 106 74.5
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 9.4e-33 146.0 194 45.4
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 1.0e-31 142.5 194 48.5
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 4.4e-30 137.1 106 72.6
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 5.0e-26 123.6 121 66.1
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 2.1e-24 118.2 74 79.7
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 3.3e-22 110.9 66 78.8
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 4.8e-21 107.1 104 64.4
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 9.1e-20 102.8 150 52.0
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 2.0e-19 101.7 91 59.3
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 1.5e-17 95.5 75 72.0
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 2.5e-17 94.7 133 45.9
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 1.6e-16 92.0 85 62.4
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 3.6e-16 90.9 156 42.9
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 1.4e-15 89.0 178 41.6
Cpa.g.sc1515.1 Carica papaya HOM05D004479 ORTHO05D005597 5.2e-15 87.0 109 73.4
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 5.2e-15 87.0 67 70.1
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 9.8e-14 82.8 69 55.1
Haze_16261 Corylus avellana HOM05D004479 ORTHO05D029161 2.8e-13 81.3 71 74.6
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 7.0e-12 76.6 116 43.1
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 1.2e-11 75.9 76 57.9
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 5.9e-11 73.6 48 70.8
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 7.7e-11 73.2 113 43.4
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 2.9e-10 71.2 40 90.0
Psat0s1227g0040 Pisum sativum HOM05D000280 ORTHO05D015801 3.8e-10 70.9 52 75.0
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 8.5e-10 69.7 44 77.3
SHI34972 Sapria himalayana HOM05D004479 ORTHO05D005597 8.5e-10 69.7 110 40.9
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.5e-09 68.9 59 50.8
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 2.5e-09 68.2 39 84.6
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 2.5e-09 68.2 39 84.6
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 2.5e-09 68.2 39 84.6
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 3.2e-09 67.8 110 43.6
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 7.2e-09 66.6 200 31.0
Lj5C22T9 Lonicera japonica HOM05D004479 ORTHO05D029161 1.2e-08 65.9 73 68.5
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 6.1e-08 63.5 69 53.6
Nitab4.5_0005739g0060 Nicotiana tabacum HOM05D004479 ORTHO05D029161 1.4e-07 62.4 81 46.9
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 2.3e-07 61.6 54 63.0
SHI13126 Sapria himalayana HOM05D000105 ORTHO05D000023 6.8e-07 60.1 56 57.1
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 2.6e-06 58.2 40 80.0
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 2.6e-06 58.2 40 80.0
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 2.6e-06 58.2 40 80.0
QL03p033134 Quercus lobata HOM05D004479 ORTHO05D005597 4.4e-06 57.4 49 63.3
SHI35501 Sapria himalayana HOM05D004479 ORTHO05D005597 7.5e-06 56.6 100 39.0
Hma1.2p1_0370F.1_g138010 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 9.8e-06 56.2 73 53.4


User provided reference genes

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