Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 1.2e-65 253.1 128 100.0
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 8.1e-59 230.3 128 88.3
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 2.4e-58 228.8 127 87.4
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 6.9e-58 227.3 130 86.2
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 9.0e-58 226.9 129 86.8
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 2.6e-57 225.3 128 88.3
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 3.4e-57 224.9 128 84.4
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 3.4e-57 224.9 128 87.5
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 2.2e-56 222.2 127 85.8
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 3.8e-56 221.5 132 84.1
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 1.1e-55 219.9 128 85.2
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 1.4e-55 219.5 128 84.4
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.4e-55 219.5 128 84.4
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 5.5e-55 217.6 131 84.0
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 7.9e-54 213.8 128 85.9
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 7.9e-54 213.8 128 81.2
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 1.8e-53 212.6 128 83.6
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 3.0e-53 211.8 128 83.6
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 3.0e-53 211.8 128 81.2
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 3.0e-53 211.8 129 82.2
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 8.7e-53 210.3 128 78.9
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.1e-52 209.9 128 83.6
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 1.9e-52 209.1 128 82.0
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 4.3e-52 208.0 128 81.2
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 4.3e-52 208.0 128 82.0
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 5.7e-52 207.6 131 84.0
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 2.8e-51 205.3 123 81.3
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 6.2e-51 204.1 128 78.1
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 6.2e-51 204.1 128 80.5
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 8.2e-51 203.8 128 78.9
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.1e-50 203.4 128 78.9
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 1.1e-50 203.4 130 81.5
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 1.4e-50 203.0 130 80.8
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 1.8e-50 202.6 128 81.2
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 1.8e-50 202.6 130 81.5
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 1.8e-50 202.6 128 81.2
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 1.8e-50 202.6 131 80.9
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 4.1e-50 201.4 128 79.7
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 5.3e-50 201.1 131 80.9
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 5.3e-50 201.1 130 80.8
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 6.9e-50 200.7 129 78.3
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 1.2e-49 199.9 128 78.1
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 7.6e-49 197.2 131 77.9
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 1.0e-48 196.8 130 78.5
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 1.7e-48 196.1 128 78.9
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 1.7e-48 196.1 129 78.3
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 2.2e-48 195.7 128 78.1
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.9e-48 195.3 130 81.5
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.9e-48 195.3 129 79.1
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 3.8e-48 194.9 126 79.4
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 3.8e-48 194.9 128 78.1
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 5.0e-48 194.5 129 79.1
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 5.0e-48 194.5 126 77.0
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 5.0e-48 194.5 126 77.0
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 6.5e-48 194.1 130 80.0
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.4e-47 193.0 130 76.2
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.2e-47 191.4 128 76.6
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 4.2e-47 191.4 131 77.1
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 9.3e-47 190.3 129 77.5
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 2.1e-46 189.1 130 76.9
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 2.1e-46 189.1 130 76.9
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.1e-46 189.1 128 75.8
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 2.7e-46 188.7 134 75.4
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 4.6e-46 188.0 130 78.5
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 4.6e-46 188.0 130 78.5
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 1.0e-45 186.8 129 76.7
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 1.0e-45 186.8 131 75.6
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 1.3e-45 186.4 128 74.2
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 1.3e-45 186.4 130 73.8
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 1.8e-45 186.0 130 77.7
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.8e-45 186.0 133 75.2
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 3.0e-45 185.3 129 76.0
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.7e-45 184.1 129 75.2
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.7e-45 184.1 129 75.2
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 6.7e-45 184.1 129 75.2
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 1.9e-44 182.6 126 73.8
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 4.3e-44 181.4 116 75.9
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 5.7e-44 181.0 134 76.9
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 7.4e-44 180.6 132 72.7
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 9.7e-44 180.3 126 73.8
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.3e-43 179.9 132 76.5
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 1.6e-43 179.5 128 73.4
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 2.8e-43 178.7 132 72.0
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 2.8e-43 178.7 133 71.4
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 2.8e-43 178.7 133 71.4
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 2.8e-43 178.7 129 76.0
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 2.8e-43 178.7 132 73.5
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 4.8e-43 177.9 128 71.9
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 1.1e-42 176.8 132 75.0
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 1.4e-42 176.4 133 71.4
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 1.4e-42 176.4 132 72.7
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 1.4e-42 176.4 132 72.7
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 1.4e-42 176.4 125 72.0
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.4e-42 176.4 119 78.2
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 1.8e-42 176.0 128 71.9
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 1.8e-42 176.0 132 74.2
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 2.4e-42 175.6 126 71.4
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 5.3e-42 174.5 130 75.4
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 5.3e-42 174.5 132 73.5
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.9e-42 174.1 128 71.1
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 9.0e-42 173.7 115 77.4
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.2e-41 173.3 130 74.6
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.2e-41 173.3 104 83.7
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 2.0e-41 172.6 132 69.7
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 2.0e-41 172.6 132 69.7
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 2.0e-41 172.6 132 69.7
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 2.0e-41 172.6 128 68.0
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 3.4e-41 171.8 129 72.9
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 1.3e-40 169.9 96 86.5
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.7e-40 169.5 130 73.8
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 1.7e-40 169.5 131 69.5
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 2.2e-40 169.1 130 70.8
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 2.9e-40 168.7 103 81.6
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 3.8e-40 168.3 128 68.8
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 3.8e-40 168.3 128 71.1
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 3.8e-40 168.3 128 71.1
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 5.0e-40 167.9 131 73.3
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 6.5e-40 167.5 96 86.5
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 7.2e-39 164.1 128 68.0
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 1.2e-38 163.3 129 69.0
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 7.9e-38 160.6 130 68.5
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 1.0e-37 160.2 114 73.7
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 1.4e-37 159.8 130 66.2
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 2.3e-37 159.1 110 70.9
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 3.0e-37 158.7 108 70.4
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 1.1e-36 156.8 110 70.0
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 5.7e-36 154.5 123 67.5
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 1.3e-35 153.3 110 68.2
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 1.4e-34 149.8 127 63.0
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.4e-34 149.8 94 77.7
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 5.3e-34 147.9 93 76.3
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 5.3e-34 147.9 114 67.5
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 2.6e-33 145.6 87 81.6
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 2.6e-33 145.6 116 69.0
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 4.5e-33 144.8 113 63.7
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 1.8e-29 132.9 124 60.5
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 3.0e-29 132.1 83 79.5
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 3.0e-29 132.1 128 57.8
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.1e-28 130.2 111 64.9
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 2.0e-28 129.4 131 59.5
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 5.7e-28 127.9 122 59.8
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.8e-27 124.8 93 67.7
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 4.5e-25 118.2 113 55.8
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.9e-24 115.5 69 85.5
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 8.5e-24 114.0 104 62.5
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 9.4e-23 110.5 128 56.2
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 5.2e-21 104.8 72 73.6
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 7.4e-20 100.9 78 70.5
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 6.3e-19 97.8 95 56.8
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 1.6e-17 93.2 96 51.0
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 7.7e-17 90.9 46 97.8
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.2e-15 85.5 69 68.1
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 3.6e-14 82.0 68 61.8
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 3.6e-14 82.0 67 58.2
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.3e-08 63.5 79 46.8


User provided reference genes

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