Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 0.0e+00 1919.8 988 100.0
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 0.0e+00 1526.5 988 81.5
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 0.0e+00 1482.6 988 79.5
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 0.0e+00 1315.1 996 73.1
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 0.0e+00 1216.1 994 69.0
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 0.0e+00 1198.7 994 68.2
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 0.0e+00 1193.7 994 67.8
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 0.0e+00 1156.7 1036 64.6
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 0.0e+00 1120.5 1018 62.8
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 0.0e+00 1104.7 1004 61.7
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 0.0e+00 1091.6 970 63.2
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 0.0e+00 1076.2 1002 60.2
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 3.4e-311 1071.6 1002 60.7
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 3.0e-310 1068.5 1003 61.7
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 4.1e-307 1058.1 994 60.9
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 1.0e-305 1053.5 992 60.9
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 6.5e-305 1050.8 1020 58.9
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 1.8e-302 1042.7 1002 59.0
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 1.6e-300 1036.2 1005 60.2
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.4e-299 1032.3 985 59.1
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 9.0e-299 1030.4 1003 59.1
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.0e-297 1026.9 996 59.2
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 1.4e-296 1023.1 1002 59.4
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 4.2e-296 1021.5 997 59.4
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 4.6e-295 1018.1 999 59.0
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 1.0e-294 1016.9 999 58.3
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 2.5e-293 1012.3 1002 57.5
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 2.4e-291 1005.7 999 59.1
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 2.0e-290 1002.7 994 57.0
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 1.3e-289 1000.0 1055 55.6
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 5.0e-289 998.0 1019 56.2
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 5.5e-288 994.6 1004 57.7
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 4.7e-287 991.5 1005 56.8
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 4.7e-287 991.5 995 57.6
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 2.3e-286 989.2 1004 58.6
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 6.7e-286 987.6 1003 57.1
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 4.4e-285 984.9 937 59.2
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 4.1e-283 978.4 1014 56.7
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 2.2e-281 972.6 998 55.2
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 2.7e-279 965.7 1003 55.9
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 4.7e-279 964.9 998 57.1
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 6.1e-279 964.5 999 57.4
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 1.0e-278 963.8 999 55.8
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 5.7e-277 958.0 1001 55.7
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 9.1e-275 950.7 1009 55.2
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 1.6e-274 949.9 1005 56.1
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 3.6e-271 938.7 1049 52.4
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 1.0e-270 937.2 1047 53.2
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 2.3e-270 936.0 1125 51.4
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 4.0e-270 935.3 1048 52.9
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 8.8e-270 934.1 1158 49.8
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 3.7e-268 928.7 942 57.0
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 8.3e-268 927.5 1045 53.3
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 4.1e-267 925.2 1005 54.1
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 1.2e-266 923.7 1034 54.3
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 3.8e-265 918.7 1031 53.9
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 8.5e-265 917.5 1034 51.8
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 8.0e-263 911.0 1122 49.6
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 4.0e-262 908.7 715 66.6
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 6.8e-262 907.9 1049 52.2
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 3.1e-259 899.0 1001 51.7
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 9.1e-259 897.5 1033 52.8
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.3e-257 893.6 1061 51.2
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 8.6e-257 891.0 1000 52.5
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.9e-256 889.8 990 53.4
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 2.5e-256 889.4 1003 53.6
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 3.0e-254 882.5 990 52.3
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 3.0e-254 882.5 1002 52.7
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 2.0e-253 879.8 984 51.2
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 7.5e-253 877.9 1018 52.4
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 1.1e-251 874.0 1002 51.6
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 2.4e-251 872.8 1014 51.3
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 3.2e-251 872.5 1004 50.8
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 3.5e-250 869.0 991 51.0
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 8.6e-249 864.4 1002 50.7
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 1.5e-248 863.6 1009 50.9
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 8.0e-247 857.8 1002 51.2
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 1.8e-246 856.7 1003 50.4
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 2.6e-245 852.8 1013 50.9
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 3.4e-245 852.4 1004 50.5
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 5.8e-245 851.7 1000 50.3
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 4.9e-244 848.6 987 50.6
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 5.4e-243 845.1 1002 52.3
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 6.6e-241 838.2 1015 50.0
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 6.6e-241 838.2 1013 49.9
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 1.1e-240 837.4 1010 50.7
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 7.3e-240 834.7 1008 49.6
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 2.8e-239 832.8 1000 49.5
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 1.1e-238 830.9 992 50.5
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 9.8e-237 824.3 674 64.4
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 1.9e-235 820.1 994 50.7
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 2.5e-232 809.7 994 49.5
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 5.2e-230 802.0 761 57.3
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 1.2e-229 800.8 982 49.8
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 4.4e-229 798.9 994 48.7
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 4.4e-229 798.9 993 49.1
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 1.3e-225 787.3 1014 48.2
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 1.7e-225 786.9 682 60.6
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 6.6e-225 785.0 695 59.4
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 9.6e-224 781.2 677 61.3
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 4.7e-223 778.9 1018 48.0
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 4.7e-223 778.9 1023 48.4
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 1.8e-222 776.9 743 56.9
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 5.2e-222 775.4 762 55.9
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 2.6e-221 773.1 676 60.7
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 4.9e-220 768.8 691 59.3
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 1.2e-213 747.7 992 47.4
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 1.1e-208 731.1 1006 46.8
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 1.4e-206 724.2 702 55.1
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 3.2e-203 713.0 1003 45.4
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 1.1e-198 698.0 733 52.3
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 8.4e-196 688.3 680 54.1
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 4.2e-195 686.0 677 54.7
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 6.1e-178 629.0 1046 41.8
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 2.0e-176 624.0 1009 42.7
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 4.7e-162 576.2 726 46.1
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 2.9e-156 557.0 901 42.0
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 1.1e-150 538.5 628 47.5
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 2.0e-149 534.3 768 46.2
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 6.2e-130 469.5 663 43.4
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 1.3e-108 398.7 487 41.7
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 2.2e-103 381.3 309 60.5
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 3.2e-102 377.5 760 33.4
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 2.5e-99 367.9 480 39.8
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 1.3e-92 345.5 461 41.9
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.6e-43 181.8 372 43.0
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 3.5e-40 171.4 115 71.3
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 5.0e-39 167.5 115 70.4
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 1.1e-30 139.8 428 26.9
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 8.3e-26 123.6 176 44.9
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 5.9e-24 117.5 169 43.2
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 2.4e-17 95.5 156 42.3
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 3.2e-17 95.1 156 42.3
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 1.5e-14 86.3 101 45.5
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 9.5e-14 83.6 84 54.8
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 6.2e-13 80.9 101 44.6
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 1.9e-09 69.3 94 46.8
SGA_v2.0_scaffold57G20265 Striga asiatica HOM05D005408 ORTHO05D006790 3.0e-07 62.0 89 46.1


User provided reference genes

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