Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G039600 Prunus persica HOM05D007526 ORTHO05D009350 1.2e-118 429.9 225 100.0
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 5.4e-90 334.7 225 76.9
MD13G1214200 Malus domestica HOM05D007526 ORTHO05D009350 1.1e-79 300.4 216 75.5
RcHm_v2.0_Chr4g0393211 Rosa chinensis HOM05D007526 ORTHO05D009350 9.9e-60 234.2 226 62.4
FvH4_4g03670 Fragaria vesca HOM05D007526 ORTHO05D009350 7.9e-57 224.6 218 61.0
FAN12G2381 Fragaria x ananassa HOM05D007526 ORTHO05D009350 1.0e-56 224.2 218 61.0
FAN17G0331 Fragaria x ananassa HOM05D007526 ORTHO05D009350 9.0e-53 211.1 218 58.7
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 5.3e-37 158.7 216 50.9
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 9.0e-37 157.9 217 50.2
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 1.0e-35 154.5 217 49.3
Glyma.20G209500 Glycine max HOM05D007526 ORTHO05D009350 2.5e-34 149.8 216 45.4
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 3.2e-34 149.4 214 50.9
VMungo0720G1630 Vigna mungo HOM05D007526 ORTHO05D009350 3.2e-34 149.4 216 46.3
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 7.2e-34 148.3 214 47.2
Glyma.10G181000 Glycine max HOM05D007526 ORTHO05D009350 3.5e-33 146.0 217 45.6
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 6.1e-33 145.2 218 46.8
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 3.3e-31 139.4 224 44.6
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 5.7e-31 138.7 217 44.7
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 9.7e-31 137.9 211 41.7
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 8.2e-30 134.8 218 42.2
Lj6g0011756 Lotus japonicus HOM05D007526 ORTHO05D009350 1.1e-29 134.4 216 43.5
Glyma.20G209600 Glycine max HOM05D007526 ORTHO05D009350 1.8e-29 133.7 212 41.0
Sed0008521 Sechium edule HOM05D007526 ORTHO05D009350 5.3e-29 132.1 217 43.3
Duzib212G0007 Durio zibethinus HOM05D007526 ORTHO05D009350 6.9e-29 131.7 221 40.7
Glyma.02G005400 Glycine max HOM05D007526 ORTHO05D009350 9.0e-29 131.3 234 43.6
Phvul.007G108400 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 2.6e-28 129.8 217 43.8
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 5.0e-27 125.6 212 43.9
VMungo0720G0856 Vigna mungo HOM05D007526 ORTHO05D009350 8.5e-27 124.8 261 38.3
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 4.2e-26 122.5 212 43.4
Lalb_Chr19g0128211 Lupinus albus HOM05D007526 ORTHO05D009350 4.2e-26 122.5 225 42.2
Potri.008G167200 Populus trichocarpa HOM05D007526 ORTHO05D009350 4.2e-26 122.5 225 45.3
Medtr1g042820 Medicago truncatula HOM05D007526 ORTHO05D009350 2.1e-25 120.2 221 39.8
Psat6g104840 Pisum sativum HOM05D007526 ORTHO05D009350 7.9e-25 118.2 219 40.2
TWI09G0237 Tripterygium wilfordii HOM05D007526 ORTHO05D009350 1.0e-24 117.9 222 41.0
Glyma.10G006400 Glycine max HOM05D007526 ORTHO05D009350 1.4e-24 117.5 242 38.4
Manes.03G164000 Manihot esculenta HOM05D007526 ORTHO05D009350 3.0e-24 116.3 219 42.5
Eucgr.H03043 Eucalyptus grandis HOM05D007526 ORTHO05D009350 3.9e-24 115.9 221 38.9
CANSAT78G2320 Cannabis sativa HOM05D007526 ORTHO05D009350 2.5e-23 113.2 246 37.0
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 4.3e-23 112.5 212 42.5
Phvul.007G273600 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 5.7e-23 112.1 265 38.9
QL06p018008 Quercus lobata HOM05D007526 ORTHO05D009350 6.3e-22 108.6 120 57.5
TPR.G25185 Trifolium pratense HOM05D007526 ORTHO05D009350 6.3e-22 108.6 224 37.9
Lj5g0022077 Lotus japonicus HOM05D007526 ORTHO05D009350 5.3e-21 105.5 232 37.9
Sabra08G0127400 Salix brachista HOM05D007526 ORTHO05D009350 9.1e-21 104.8 210 43.8
PGR004G2347 Punica granatum HOM05D007526 ORTHO05D009350 1.5e-20 104.0 221 35.3
arahy.Tifrunner.gnm1.ann1.582VFN Arachis hypogaea HOM05D007526 ORTHO05D009350 4.5e-20 102.4 225 38.7
Manes.15G040900 Manihot esculenta HOM05D007526 ORTHO05D009350 5.9e-20 102.1 227 38.3
Cc03_g05540 Coffea canephora HOM05D007526 ORTHO05D009350 7.7e-20 101.7 216 37.5
arahy.Tifrunner.gnm1.ann1.STCN49 Arachis hypogaea HOM05D007526 ORTHO05D009350 1.3e-19 100.9 225 38.2
Glyma.10G180900 Glycine max HOM05D007526 ORTHO05D009350 6.5e-19 98.6 217 35.0
Rhsim04G0182300 Rhododendron simsii HOM05D007526 ORTHO05D009350 9.4e-18 94.7 216 40.3
CSS0033898 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 1.2e-17 94.4 223 37.2
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 2.1e-17 93.6 218 33.9
BolC7t41918H Brassica oleracea HOM05D007526 ORTHO05D009350 6.1e-17 92.0 223 34.1
Sp3g20910 Schrenkiella parvula HOM05D007526 ORTHO05D009350 5.1e-16 89.0 209 35.4
C07p14270 Brassica napus HOM05D007526 ORTHO05D009350 2.0e-15 87.0 219 33.8
CSS0016058 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 2.6e-15 86.7 221 34.8
Sopen09g033060 Solanum pennellii HOM05D007526 ORTHO05D009350 3.3e-15 86.3 254 31.1
A07p09230 Brassica napus HOM05D007526 ORTHO05D009350 4.4e-15 85.9 215 33.5
BraA04t16457Z Brassica rapa HOM05D007526 ORTHO05D009350 5.7e-15 85.5 210 33.8
Medtr1g076110 Medicago truncatula HOM05D007526 ORTHO05D009350 1.3e-14 84.3 137 45.3
Thhalv10026764m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 1.7e-14 84.0 212 35.8
PGSC0003DMG400017266 Solanum tuberosum HOM05D007526 ORTHO05D009350 1.7e-14 84.0 255 31.4
A04p07660 Brassica napus HOM05D007526 ORTHO05D009350 3.7e-14 82.8 223 35.9
COL.COLO4_15878 Corchorus olitorius HOM05D007526 ORTHO05D009350 8.2e-14 81.6 89 52.8
TAR636G0759 Trochodendron aralioides HOM05D007526 ORTHO05D009350 8.2e-14 81.6 213 36.2
THA.LOC104808623 Tarenaya hassleriana HOM05D007526 ORTHO05D009350 1.1e-13 81.3 209 34.4
AL7G41840 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 1.4e-13 80.9 214 33.2
C04p41350 Brassica napus HOM05D007526 ORTHO05D009350 1.4e-13 80.9 220 35.5
BcaB02g08612 Brassica carinata HOM05D007526 ORTHO05D009350 2.4e-13 80.1 215 33.5
BcaC02g09320 Brassica carinata HOM05D007526 ORTHO05D009350 4.1e-13 79.3 220 35.5
BolC4t25713H Brassica oleracea HOM05D007526 ORTHO05D009350 4.1e-13 79.3 220 35.5
Oeu055231.1 Olea europaea HOM05D007526 ORTHO05D009350 4.1e-13 79.3 219 35.6
TPR.G1498 Trifolium pratense HOM05D007526 ORTHO05D009350 4.1e-13 79.3 114 43.0
CARHR220600 Cardamine hirsuta HOM05D007526 ORTHO05D009350 7.0e-13 78.6 214 33.6
Thhalv10022185m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 7.0e-13 78.6 219 33.8
Aqoxy5G00249 Aquilegia oxysepala HOM05D007526 ORTHO05D009350 1.6e-12 77.4 240 31.7
Gohir.D09G230800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 1.6e-12 77.4 204 34.3
Sp7g12460 Schrenkiella parvula HOM05D007526 ORTHO05D009350 2.0e-12 77.0 213 33.3
AUR62015571 Chenopodium quinoa HOM05D007526 ORTHO05D009350 3.5e-12 76.3 205 31.7
Lalb_Chr10g0098881 Lupinus albus HOM05D007526 ORTHO05D009350 4.5e-12 75.9 217 35.9
EL10Ac3g05005 Beta vulgaris HOM05D007526 ORTHO05D009350 5.9e-12 75.5 218 31.2
BraA07t28719Z Brassica rapa HOM05D007526 ORTHO05D009350 5.9e-12 75.5 200 34.0
CARHR099230 Cardamine hirsuta HOM05D007526 ORTHO05D009350 1.1e-10 71.2 213 34.7
Carub.0007s2786 Capsella rubella HOM05D007526 ORTHO05D009350 1.5e-10 70.9 227 30.4
QL09p038772 Quercus lobata HOM05D008367 ORTHO05D010529 1.5e-10 70.9 215 29.3
TAR365G0977 Trochodendron aralioides HOM05D007526 ORTHO05D009350 2.5e-10 70.1 218 31.2
AT4G14380 Arabidopsis thaliana HOM05D007526 ORTHO05D009350 7.2e-10 68.6 212 30.7
Hma1.2p1_0267F.1_g107260 Hydrangea macrophylla HOM05D007526 ORTHO05D009350 1.2e-09 67.8 77 49.4
Aa31LG9G2940 Aethionema arabicum HOM05D007526 ORTHO05D009350 2.7e-09 66.6 197 27.4
Cc01_g18350 Coffea canephora HOM05D008367 ORTHO05D010529 3.6e-09 66.2 216 28.2
Dinv27054 Davidia involucrata HOM05D007526 ORTHO05D009350 3.6e-09 66.2 66 59.1
Ah.04g155760 Amaranthus hybridus HOM05D007526 ORTHO05D009350 6.1e-09 65.5 223 31.4
Ciclev10022407m.g Citrus clementina HOM05D008367 ORTHO05D010529 6.1e-09 65.5 196 27.6
Potri.002G038400 Populus trichocarpa HOM05D008367 ORTHO05D010529 6.1e-09 65.5 205 28.8
Nn3g19655 Nelumbo nucifera HOM05D007526 ORTHO05D009350 1.4e-08 64.3 242 30.6
MBI07_g16245_MAGBIO Magnolia biondii HOM05D007526 ORTHO05D009350 1.8e-08 63.9 227 30.8
Duzib138G1787 Durio zibethinus HOM05D008367 ORTHO05D010529 3.0e-08 63.2 208 30.3
Sabra05G0173000 Salix brachista HOM05D008367 ORTHO05D010529 4.0e-08 62.8 197 28.4
AL3G37924 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 1.1e-07 61.2 54 59.3
Medtr7g096950 Medicago truncatula HOM05D008367 ORTHO05D010529 1.5e-07 60.8 204 30.4
Migut.G00517 Erythranthe guttata HOM05D007526 ORTHO05D009350 2.0e-07 60.5 69 56.5
Potri.005G224200 Populus trichocarpa HOM05D008367 ORTHO05D010529 2.6e-07 60.1 202 29.7
CANSAT01G1417 Cannabis sativa HOM05D008367 ORTHO05D010529 3.3e-07 59.7 194 28.4
CiPaw.03G264200 Carya illinoinensis HOM05D008367 ORTHO05D010529 3.3e-07 59.7 204 32.4
Hma1.2p1_0576F.1_g182070 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 3.3e-07 59.7 207 29.5
CAN.G896.7 Capsicum annuum HOM05D008367 ORTHO05D010529 4.4e-07 59.3 210 30.0
Duzib133G0413 Durio zibethinus HOM05D008367 ORTHO05D010529 4.4e-07 59.3 217 29.0
Hma1.2p1_0273F.1_g109700 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 5.7e-07 58.9 212 28.3
Haze_24631 Corylus avellana HOM05D008367 ORTHO05D010529 7.5e-07 58.5 211 31.8
Lj1g0003464 Lotus japonicus HOM05D008367 ORTHO05D010529 9.7e-07 58.2 226 27.4
Cfa002424 Carpinus fangiana HOM05D008367 ORTHO05D010529 1.3e-06 57.8 204 30.9
Rhsim13G0035000 Rhododendron simsii HOM05D008367 ORTHO05D010529 1.3e-06 57.8 215 28.8
Migut.N02203 Erythranthe guttata HOM05D008367 ORTHO05D010529 1.7e-06 57.4 219 28.3
MD05G1197200 Malus domestica HOM05D008367 ORTHO05D010529 1.7e-06 57.4 205 28.3
Nn1g02762 Nelumbo nucifera HOM05D007526 ORTHO05D009350 2.8e-06 56.6 241 27.0
Glyma.19G164700 Glycine max HOM05D008367 ORTHO05D010529 4.8e-06 55.8 204 29.4
Lsat_1_v5_gn_3_120620 Lactuca sativa HOM05D064852 ORTHO05D009350 4.8e-06 55.8 141 32.6
Actinidia01843 Actinidia chinensis HOM05D007526 ORTHO05D009350 6.3e-06 55.5 90 44.4
Cpa.g.sc165.10 Carica papaya HOM05D008367 ORTHO05D010529 6.3e-06 55.5 192 29.7
Sabra02G0030800 Salix brachista HOM05D008367 ORTHO05D010529 8.2e-06 55.1 199 28.6


User provided reference genes

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