Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 1.7e-57 225.7 111 100.0
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 1.8e-38 162.5 114 78.9
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 2.9e-36 155.2 112 76.8
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 6.7e-33 144.1 122 68.9
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 8.7e-33 143.7 122 68.9
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.9e-32 142.5 119 69.7
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.6e-32 141.0 119 68.9
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 1.1e-30 136.7 123 67.5
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 1.1e-22 110.2 119 59.7
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 1.4e-22 109.8 111 57.7
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 1.2e-21 106.7 116 56.9
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.5e-21 106.3 100 62.0
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 3.4e-21 105.1 116 55.2
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 4.5e-21 104.8 105 56.2
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 1.7e-20 102.8 115 54.8
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 2.2e-20 102.4 108 62.0
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 2.9e-20 102.1 102 55.9
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 2.9e-20 102.1 105 57.1
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 8.4e-20 100.5 101 58.4
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 1.4e-19 99.8 111 61.3
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.4e-19 99.8 112 55.4
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 1.9e-19 99.4 116 55.2
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 4.2e-19 98.2 105 56.2
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 9.3e-19 97.1 111 56.8
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.6e-18 96.3 109 53.2
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 2.1e-18 95.9 110 56.4
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 3.5e-18 95.1 114 59.6
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 4.6e-18 94.7 106 52.8
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 7.9e-18 94.0 111 51.4
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.0e-17 93.6 112 54.5
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 1.0e-17 93.6 112 54.5
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.3e-17 93.2 109 51.4
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 1.8e-17 92.8 104 51.9
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 1.8e-17 92.8 112 51.8
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.3e-17 92.4 100 57.0
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.3e-17 92.4 116 52.6
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.3e-17 92.4 116 52.6
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.0e-17 92.0 109 50.5
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 3.0e-17 92.0 109 55.0
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 3.9e-17 91.7 110 51.8
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.7e-17 90.5 109 49.5
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 8.7e-17 90.5 106 52.8
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 1.1e-16 90.1 109 53.2
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.9e-16 89.4 114 51.8
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.9e-16 89.4 103 50.5
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.5e-16 89.0 115 49.6
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.5e-16 89.0 115 49.6
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 3.3e-16 88.6 117 52.1
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 3.3e-16 88.6 108 53.7
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 3.3e-16 88.6 100 56.0
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.3e-16 88.2 115 49.6
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 4.3e-16 88.2 97 53.6
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 5.7e-16 87.8 114 50.9
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 5.7e-16 87.8 105 50.5
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.4e-16 87.4 116 51.7
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 7.4e-16 87.4 115 51.3
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 9.7e-16 87.0 107 51.4
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.3e-15 86.7 101 51.5
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 1.6e-15 86.3 117 52.1
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.6e-15 86.3 103 52.4
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 1.6e-15 86.3 115 53.9
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 2.2e-15 85.9 106 51.9
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.8e-15 85.5 92 53.3
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 2.8e-15 85.5 112 49.1
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 2.8e-15 85.5 112 49.1
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 4.8e-15 84.7 103 50.5
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 4.8e-15 84.7 96 51.0
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 6.3e-15 84.3 93 52.7
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 6.3e-15 84.3 103 48.5
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 8.2e-15 84.0 85 57.6
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 8.2e-15 84.0 104 51.0
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.1e-14 83.6 92 55.4
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.1e-14 83.6 111 46.8
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.4e-14 83.2 99 54.5
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 1.8e-14 82.8 102 51.0
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.8e-14 82.8 113 46.9
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 2.4e-14 82.4 120 49.2
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.4e-14 82.4 107 52.3
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 3.1e-14 82.0 134 47.8
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.1e-14 82.0 101 50.5
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 5.3e-14 81.3 108 50.0
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 5.3e-14 81.3 105 54.3
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 5.3e-14 81.3 91 56.0
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 6.9e-14 80.9 105 51.4
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.2e-13 80.1 108 50.9
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.2e-13 80.1 114 47.4
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 1.2e-13 80.1 99 48.5
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.2e-13 80.1 103 51.5
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 2.0e-13 79.3 99 52.5
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 2.0e-13 79.3 100 46.0
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 2.0e-13 79.3 95 48.4
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 2.0e-13 79.3 100 53.0
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 2.6e-13 79.0 100 48.0
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 2.6e-13 79.0 79 53.2
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.6e-13 79.0 117 51.3
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 3.4e-13 78.6 120 47.5
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 4.5e-13 78.2 96 51.0
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 4.5e-13 78.2 104 45.2
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 4.5e-13 78.2 102 49.0
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 5.9e-13 77.8 102 53.9
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 5.9e-13 77.8 115 52.2
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 5.9e-13 77.8 121 47.1
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 5.9e-13 77.8 104 50.0
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 5.9e-13 77.8 100 50.0
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 7.6e-13 77.4 114 50.9
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 7.6e-13 77.4 113 49.6
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 1.0e-12 77.0 91 46.2
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 1.0e-12 77.0 94 47.9
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.3e-12 76.6 100 50.0
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.2e-12 75.9 111 45.0
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 2.9e-12 75.5 116 46.6
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 5.0e-12 74.7 111 47.7
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 5.0e-12 74.7 106 48.1
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 8.5e-12 73.9 98 44.9
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 8.5e-12 73.9 117 47.0
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.1e-11 73.6 108 50.0
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 1.1e-11 73.6 110 43.6
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 1.1e-11 73.6 95 50.5
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.1e-11 73.6 101 44.6
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 1.1e-11 73.6 110 47.3
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 1.4e-11 73.2 104 50.0
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.4e-11 73.2 109 47.7
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.9e-11 72.8 96 46.9
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 2.5e-11 72.4 97 46.4
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 2.5e-11 72.4 97 46.4
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 3.2e-11 72.0 106 46.2
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.2e-11 72.0 103 47.6
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 4.2e-11 71.6 120 47.5
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 4.2e-11 71.6 112 47.3
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 5.5e-11 71.2 103 45.6
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 5.5e-11 71.2 103 47.6
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 5.5e-11 71.2 112 47.3
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 7.2e-11 70.9 100 47.0
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 9.4e-11 70.5 109 42.2
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 1.2e-10 70.1 109 41.3
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 1.2e-10 70.1 96 47.9
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 1.2e-10 70.1 96 47.9
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-10 70.1 109 41.3
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 1.2e-10 70.1 109 41.3
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 1.2e-10 70.1 109 42.2
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.6e-10 69.7 103 46.6
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 1.6e-10 69.7 95 48.4
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.1e-10 69.3 103 47.6
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 2.7e-10 68.9 108 47.2
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 2.7e-10 68.9 124 46.0
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 3.6e-10 68.6 104 48.1
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 3.6e-10 68.6 105 42.9
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 3.6e-10 68.6 108 47.2
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 4.6e-10 68.2 103 44.7
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 4.6e-10 68.2 103 45.6
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 4.6e-10 68.2 103 45.6
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 4.6e-10 68.2 104 48.1
FAN17G0281 Fragaria x ananassa HOM05D003940 ORTHO05D004461 4.6e-10 68.2 88 48.9
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.6e-10 68.2 130 42.3
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.6e-10 68.2 130 42.3
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.6e-10 68.2 103 43.7
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 6.1e-10 67.8 103 45.6
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 7.9e-10 67.4 106 45.3
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 7.9e-10 67.4 107 44.9
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 7.9e-10 67.4 103 45.6
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.0e-09 67.0 104 47.1
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 1.0e-09 67.0 106 45.3
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.4e-09 66.6 109 45.0
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 3.9e-09 65.1 108 43.5
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 1.1e-08 63.5 105 40.0
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 1.1e-08 63.5 99 43.4
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 1.5e-08 63.2 116 39.7
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 3.3e-08 62.0 112 43.8
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 4.3e-08 61.6 102 42.2
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 1.3e-07 60.1 107 41.1
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.7e-07 59.7 129 42.6
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 8.2e-07 57.4 99 43.4
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 9.1e-06 53.9 93 37.6


User provided reference genes

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