Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 1.3e-171 606.7 406 100.0
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 1.7e-94 350.5 405 62.0
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 9.5e-69 265.0 402 56.2
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.5e-61 241.1 457 44.0
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 1.9e-61 240.7 500 36.4
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 6.8e-59 232.3 438 45.7
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.3e-57 228.0 457 44.9
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 2.2e-57 227.3 472 43.6
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 3.7e-57 226.5 505 36.0
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 8.3e-57 225.3 505 36.0
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 1.1e-56 224.9 424 51.9
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 4.6e-55 219.5 409 39.6
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 1.5e-53 214.5 448 46.4
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 4.3e-53 213.0 411 39.9
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 1.6e-52 211.1 420 38.1
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 8.0e-52 208.8 528 39.0
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 5.2e-51 206.1 423 36.6
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 1.2e-50 204.9 415 39.0
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 1.3e-49 201.4 440 36.8
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 1.7e-49 201.1 442 36.4
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.9e-49 200.3 266 48.9
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 4.1e-48 196.4 414 35.5
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 4.1e-48 196.4 417 37.4
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 7.0e-48 195.7 421 36.6
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 4.6e-47 193.0 432 35.9
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.7e-46 191.0 406 36.7
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.7e-46 191.0 406 36.7
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 1.1e-43 181.8 412 42.5
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.3e-43 180.6 408 38.2
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 6.8e-43 179.1 441 34.0
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 2.0e-42 177.6 431 35.5
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 2.6e-42 177.2 427 34.9
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 4.4e-42 176.4 474 37.8
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 1.3e-41 174.9 429 37.1
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 8.3e-41 172.2 428 36.7
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 5.4e-40 169.5 420 41.4
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 9.2e-40 168.7 463 32.2
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 1.2e-39 168.3 437 40.7
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 1.3e-38 164.9 482 36.9
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 1.7e-38 164.5 417 33.3
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 3.9e-38 163.3 439 32.6
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 3.3e-37 160.2 434 34.3
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 5.6e-37 159.5 424 35.4
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 7.3e-37 159.1 431 32.7
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 7.3e-37 159.1 426 34.0
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 8.1e-36 155.6 105 73.3
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 1.4e-35 154.8 391 30.7
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 3.1e-35 153.7 396 33.8
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 4.0e-35 153.3 429 33.8
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 4.0e-35 153.3 493 31.8
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 2.6e-34 150.6 470 36.4
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 7.6e-34 149.1 425 30.6
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 7.6e-34 149.1 491 29.3
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 7.6e-34 149.1 460 38.0
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 9.9e-34 148.7 143 57.3
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 1.3e-33 148.3 455 37.6
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 1.7e-33 147.9 470 36.2
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 1.7e-33 147.9 402 31.6
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 2.2e-33 147.5 478 36.4
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 3.8e-33 146.7 436 30.7
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 4.9e-33 146.4 431 29.7
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.1e-32 145.2 457 32.8
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 1.4e-32 144.8 448 31.7
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 1.9e-32 144.4 415 31.1
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 1.9e-32 144.4 467 30.2
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 2.4e-32 144.1 464 31.5
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 2.4e-32 144.1 413 31.7
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 2.4e-32 144.1 413 31.7
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 2.4e-32 144.1 403 32.5
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 5.4e-32 142.9 463 30.5
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 5.4e-32 142.9 487 30.2
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 9.2e-32 142.1 424 31.4
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 1.6e-31 141.4 133 54.9
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 2.7e-31 140.6 467 33.8
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 1.0e-30 138.7 437 35.5
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 1.3e-30 138.3 456 33.3
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 1.7e-30 137.9 406 29.1
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 2.5e-29 134.0 442 30.8
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 5.6e-29 132.9 131 55.0
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 7.3e-29 132.5 410 29.5
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 7.3e-29 132.5 121 54.5
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 7.3e-29 132.5 445 32.1
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 9.6e-29 132.1 137 48.9
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 1.3e-28 131.7 480 29.4
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 1.6e-28 131.3 427 30.9
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 2.1e-28 131.0 133 50.4
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 2.1e-28 131.0 125 54.4
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 2.1e-28 131.0 131 54.2
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 2.8e-28 130.6 132 52.3
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 3.6e-28 130.2 142 47.9
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 4.8e-28 129.8 104 60.6
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 4.8e-28 129.8 112 55.4
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 8.1e-28 129.0 131 51.9
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 8.1e-28 129.0 124 53.2
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 8.1e-28 129.0 412 34.2
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 1.1e-27 128.6 396 28.3
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 1.8e-27 127.9 460 31.1
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 3.1e-27 127.1 143 47.6
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 3.1e-27 127.1 522 34.9
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 4.0e-27 126.7 125 55.2
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 1.2e-26 125.2 132 52.3
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 1.5e-26 124.8 440 30.9
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 2.0e-26 124.4 445 27.6
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 3.4e-26 123.6 517 31.3
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 3.4e-26 123.6 103 60.2
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 5.8e-26 122.9 121 56.2
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 7.6e-26 122.5 418 29.2
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 1.3e-25 121.7 514 37.5
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 2.9e-25 120.6 450 27.8
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 8.4e-25 119.0 499 28.3
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 8.4e-25 119.0 462 25.5
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 8.4e-25 119.0 462 25.5
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 8.4e-25 119.0 496 25.8
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 1.1e-24 118.6 407 27.5
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 1.4e-24 118.2 405 28.4
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 5.4e-24 116.3 124 52.4
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 9.3e-24 115.5 127 52.0
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 1.2e-23 115.2 479 29.6
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 1.2e-23 115.2 472 28.0
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 1.0e-22 112.1 434 27.0
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 3.0e-22 110.5 424 29.0
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 5.1e-22 109.8 134 43.3
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 6.6e-22 109.4 424 29.0
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 8.7e-22 109.0 124 48.4
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 4.3e-21 106.7 125 48.0
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 4.3e-21 106.7 99 53.5
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 9.6e-21 105.5 136 47.8
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 4.8e-20 103.2 457 28.9
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.4e-19 100.9 395 27.6
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 3.1e-19 100.5 98 52.0
Cfa008363 Carpinus fangiana HOM05D004833 ORTHO05D005671 4.2e-16 90.1 187 36.4
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 5.4e-16 89.7 133 39.8
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 7.1e-16 89.4 121 39.7
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 1.2e-15 88.6 142 38.7
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 8.7e-14 82.4 109 42.2
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 1.6e-12 78.2 422 24.6
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 2.8e-12 77.4 102 42.2
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 6.2e-12 76.3 52 71.2
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 1.1e-11 75.5 97 41.2
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 9.0e-11 72.4 103 35.9
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 5.8e-10 69.7 125 35.2
SGA_v2.0_scaffold93G28322 Striga asiatica HOM05D004184 ORTHO05D004863 1.7e-09 68.2 45 68.9
Cre09.g402350 Chlamydomonas reinhardtii HOM05D004833 ORTHO05D005671 2.2e-09 67.8 103 35.0
A06p04460 Brassica napus HOM05D010442 ORTHO05D010690 8.4e-09 65.9 53 52.8
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 2.5e-08 64.3 108 37.0
CiPaw.01G189200 Carya illinoinensis HOM05D004833 ORTHO05D005671 9.3e-08 62.4 197 32.0
BcaC08g43040 Brassica carinata HOM05D010442 ORTHO05D010690 1.2e-07 62.0 58 50.0
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 2.1e-07 61.2 295 27.1
C06p03000 Brassica napus HOM05D010442 ORTHO05D010690 2.7e-07 60.8 55 52.7
BolC6t35423H Brassica oleracea HOM05D010442 ORTHO05D010690 2.7e-07 60.8 55 52.7
Lj6P658T32 Lonicera japonica HOM05D004833 ORTHO05D005671 2.7e-07 60.8 53 54.7
Medtr3g092440 Medicago truncatula HOM05D004833 ORTHO05D005671 4.6e-07 60.1 412 37.4
CBR_g21751 Chara braunii HOM05D004833 ORTHO05D005671 7.9e-07 59.3 99 35.4
SalBow5G1669 Salvia bowleyana HOM05D004938 ORTHO05D006035 7.9e-07 59.3 133 34.6
SalBow5G2418 Salvia bowleyana HOM05D004938 ORTHO05D006035 7.9e-07 59.3 133 34.6
BcaC01g04549 Brassica carinata HOM05D004833 ORTHO05D005671 2.3e-06 57.8 54 48.1


User provided reference genes

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