Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G024700 Prunus persica HOM05D005533 ORTHO05D006700 1.5e-68 262.7 130 100.0
Prupe.7G196900 Prunus persica HOM05D005533 ORTHO05D006700 2.3e-40 169.1 93 90.3
MD15G1219000 Malus domestica HOM05D005533 ORTHO05D006700 1.1e-37 160.2 93 84.9
MD02G1093800 Malus domestica HOM05D005533 ORTHO05D006700 2.2e-35 152.5 93 82.8
MD02G1094100 Malus domestica HOM05D005533 ORTHO05D006700 3.2e-34 148.7 93 79.6
RcHm_v2.0_Chr2g0095331 Rosa chinensis HOM05D005533 ORTHO05D006700 7.8e-33 144.1 95 74.7
FAN19G2870 Fragaria x ananassa HOM05D005533 ORTHO05D006700 1.3e-32 143.3 95 74.7
FAN23G2417 Fragaria x ananassa HOM05D005533 ORTHO05D006700 1.7e-32 142.9 95 73.7
FAN26G0711 Fragaria x ananassa HOM05D005533 ORTHO05D006700 4.3e-31 138.3 95 73.7
FAN26G2482 Fragaria x ananassa HOM05D005533 ORTHO05D006700 4.3e-31 138.3 95 73.7
Prupe.2G030000 Prunus persica HOM05D005533 ORTHO05D006700 9.5e-31 137.1 89 79.8
QL11p001018 Quercus lobata HOM05D005533 ORTHO05D006700 5.2e-29 131.3 96 65.6
QL11p001033 Quercus lobata HOM05D005533 ORTHO05D006700 5.2e-29 131.3 96 65.6
QL11p026507 Quercus lobata HOM05D005533 ORTHO05D006700 2.0e-28 129.4 96 64.6
Cfa002979 Carpinus fangiana HOM05D005533 ORTHO05D006700 9.9e-28 127.1 95 65.3
Duzib150G1415 Durio zibethinus HOM05D005533 ORTHO05D006700 1.7e-27 126.3 97 63.9
Sabra06G0110100 Salix brachista HOM05D005533 ORTHO05D006700 1.9e-26 122.9 102 61.8
Haze_26023 Corylus avellana HOM05D005533 ORTHO05D006700 2.4e-26 122.5 104 58.7
Manes.16G094600 Manihot esculenta HOM05D005533 ORTHO05D006700 2.4e-26 122.5 99 61.6
Atru.chr7.1718 Acer truncatum HOM05D005533 ORTHO05D006700 4.1e-26 121.7 95 62.1
Hund08818 Selenicereus undatus HOM05D005533 ORTHO05D006700 1.2e-25 120.2 100 58.0
CiPaw.03G205200 Carya illinoinensis HOM05D005533 ORTHO05D006700 1.6e-25 119.8 98 61.2
Lalb_Chr07g0181221 Lupinus albus HOM05D005533 ORTHO05D006700 2.1e-25 119.4 97 63.9
arahy.Tifrunner.gnm1.ann1.6W7KNB Arachis hypogaea HOM05D005533 ORTHO05D006700 3.5e-25 118.6 98 62.2
arahy.Tifrunner.gnm1.ann1.T8YV7R Arachis hypogaea HOM05D005533 ORTHO05D006700 4.6e-25 118.2 98 62.2
VMungo1309G1968 Vigna mungo HOM05D005533 ORTHO05D006700 7.8e-25 117.5 98 60.2
Phvul.009G226800 Phaseolus vulgaris HOM05D005533 ORTHO05D006700 1.3e-24 116.7 98 59.2
TAR626G0050 Trochodendron aralioides HOM05D001662 ORTHO05D002900 1.3e-24 116.7 97 60.8
Psat1g134640 Pisum sativum HOM05D005533 ORTHO05D006700 1.7e-24 116.3 97 62.9
Glyma.15G178300 Glycine max HOM05D005533 ORTHO05D006700 2.3e-24 115.9 96 60.4
Lj6g0000005 Lotus japonicus HOM05D005533 ORTHO05D006700 2.3e-24 115.9 96 60.4
GSVIVG01015066001 Vitis vinifera HOM05D005533 ORTHO05D006700 2.3e-24 115.9 98 61.2
Glyma.09G070200 Glycine max HOM05D005533 ORTHO05D006700 3.9e-24 115.2 99 61.6
Ca_02185_v3 Cicer arietinum L. HOM05D005533 ORTHO05D006700 6.6e-24 114.4 97 61.9
Lj4A914T29 Lonicera japonica HOM05D005533 ORTHO05D006700 6.6e-24 114.4 97 60.8
Potri.006G140900 Populus trichocarpa HOM05D005533 ORTHO05D006700 6.6e-24 114.4 95 62.1
TAR667G0001 Trochodendron aralioides HOM05D005533 ORTHO05D006700 8.6e-24 114.0 95 61.1
Medtr0650s0010 Medicago truncatula HOM05D005533 ORTHO05D006700 1.5e-23 113.2 97 59.8
Thecc.09G075500 Theobroma cacao HOM05D005533 ORTHO05D006700 1.5e-23 113.2 95 62.1
Sc18g0002630 Simmondsia chinensis HOM05D005533 ORTHO05D006700 2.5e-23 112.5 96 54.2
VMungo1215G2265 Vigna mungo HOM05D005533 ORTHO05D006700 3.3e-23 112.1 96 61.5
TPR.G17983 Trifolium pratense HOM05D005533 ORTHO05D006700 4.3e-23 111.7 97 60.8
EL10Ac8g19049 Beta vulgaris HOM05D005533 ORTHO05D006700 5.6e-23 111.3 107 49.5
Duzib168G0379 Durio zibethinus HOM05D005533 ORTHO05D006700 2.8e-22 109.0 89 62.9
COL.COLO4_18086 Corchorus olitorius HOM05D005533 ORTHO05D006700 4.7e-22 108.2 95 58.9
Dinv25549 Davidia involucrata HOM05D005533 ORTHO05D006700 4.7e-22 108.2 96 61.5
AUR62025256 Chenopodium quinoa HOM05D005533 ORTHO05D006700 6.2e-22 107.8 107 51.4
Glyma.17G048500 Glycine max HOM05D005533 ORTHO05D006700 6.2e-22 107.8 128 49.2
Gorai.010G089100 Gossypium raimondii HOM05D005533 ORTHO05D006700 6.2e-22 107.8 95 57.9
AUR62028261 Chenopodium quinoa HOM05D005533 ORTHO05D006700 1.1e-21 107.1 107 50.5
Ciclev10006942m.g Citrus clementina HOM05D005533 ORTHO05D006700 1.4e-21 106.7 95 57.9
Gohir.D06G076100 Gossypium hirsutum HOM05D005533 ORTHO05D006700 1.8e-21 106.3 94 57.4
Phvul.003G130100 Phaseolus vulgaris HOM05D005533 ORTHO05D006700 1.8e-21 106.3 96 58.3
arahy.Tifrunner.gnm1.ann1.M6PCW9 Arachis hypogaea HOM05D005533 ORTHO05D006700 2.4e-21 105.9 81 66.7
Glyma.13G111100 Glycine max HOM05D005533 ORTHO05D006700 3.1e-21 105.5 95 58.9
arahy.Tifrunner.gnm1.ann1.JG2I4T Arachis hypogaea HOM05D005533 ORTHO05D006700 6.8e-21 104.4 81 65.4
Ciclev10009493m.g Citrus clementina HOM05D005533 ORTHO05D006700 6.8e-21 104.4 93 57.0
DCAR_011942 Daucus carota HOM05D005533 ORTHO05D006700 6.8e-21 104.4 98 54.1
CSS0048444 Camellia sinensis var. sinensis HOM05D005533 ORTHO05D006700 8.9e-21 104.0 100 57.0
THA.LOC104826598 Tarenaya hassleriana HOM05D005533 ORTHO05D006700 1.5e-20 103.2 94 53.2
Aqoxy1G00788 Aquilegia oxysepala HOM05D005533 ORTHO05D006700 5.8e-20 101.3 96 53.1
Cpa.g.sc28.24 Carica papaya HOM05D005533 ORTHO05D006700 9.9e-20 100.5 104 51.9
TWI63G1333 Tripterygium wilfordii HOM05D005533 ORTHO05D006700 1.3e-19 100.1 101 55.4
Actinidia39651 Actinidia chinensis HOM05D005533 ORTHO05D006700 2.9e-19 99.0 97 52.6
Lsat_1_v5_gn_5_140300 Lactuca sativa HOM05D005533 ORTHO05D006700 3.8e-19 98.6 98 50.0
THA.LOC104808879 Tarenaya hassleriana HOM05D005533 ORTHO05D006700 3.8e-19 98.6 96 53.1
Actinidia30228 Actinidia chinensis HOM05D005533 ORTHO05D006700 6.4e-19 97.8 98 50.0
Nn8g38617 Nelumbo nucifera HOM05D005533 ORTHO05D006700 6.4e-19 97.8 97 50.5
Sed0024475 Sechium edule HOM05D005533 ORTHO05D006700 6.4e-19 97.8 99 54.5
vmacro17133 Vaccinium macrocarpon HOM05D005533 ORTHO05D006700 6.4e-19 97.8 98 51.0
MELO3C015528.2 Cucumis melo HOM05D005533 ORTHO05D006700 8.4e-19 97.4 98 54.1
PGR044G0127 Punica granatum HOM05D005533 ORTHO05D006700 8.4e-19 97.4 87 55.2
CsaV3_1G041130 Cucumis sativus L. HOM05D005533 ORTHO05D006700 1.4e-18 96.7 98 53.1
Rhsim05G0006900 Rhododendron simsii HOM05D005533 ORTHO05D006700 1.4e-18 96.7 98 53.1
AT2G05910 Arabidopsis thaliana HOM05D005533 ORTHO05D006700 5.4e-18 94.7 89 53.9
Ciclev10007043m.g Citrus clementina HOM05D005533 ORTHO05D006700 7.1e-18 94.4 73 63.0
AL3G43430 Arabidopsis lyrata HOM05D005533 ORTHO05D006700 9.2e-18 94.0 89 52.8
Thhalv10002675m.g Eutrema salsugineum HOM05D005533 ORTHO05D006700 9.2e-18 94.0 89 52.8
HanXRQChr01g0010251 Helianthus annuus HOM05D005533 ORTHO05D006700 9.2e-18 94.0 97 50.5
CARHR103520 Cardamine hirsuta HOM05D005533 ORTHO05D006700 1.6e-17 93.2 89 53.9
MSTRG.19455 Avicennia marina HOM05D005533 ORTHO05D006700 2.1e-17 92.8 97 47.4
BcaB06g26864 Brassica carinata HOM05D005533 ORTHO05D006700 2.1e-17 92.8 88 54.5
Carub.0003s2706 Capsella rubella HOM05D005533 ORTHO05D006700 2.1e-17 92.8 89 51.7
HanXRQChr10g0319751 Helianthus annuus HOM05D005533 ORTHO05D006700 2.1e-17 92.8 93 52.7
ECA234G2106 Erigeron canadensis HOM05D005533 ORTHO05D006700 3.5e-17 92.0 69 65.2
Sp3g24300 Schrenkiella parvula HOM05D005533 ORTHO05D006700 4.6e-17 91.7 89 51.7
THA.LOC104799615 Tarenaya hassleriana HOM05D005533 ORTHO05D006700 1.3e-16 90.1 97 51.5
Migut.J00908 Erythranthe guttata HOM05D005533 ORTHO05D006700 2.3e-16 89.4 96 47.9
Oeu000279.1 Olea europaea HOM05D005533 ORTHO05D006700 3.0e-16 89.0 94 50.0
Peaxi162Scf00928g00125 Petunia axillaris HOM05D005533 ORTHO05D006700 3.0e-16 89.0 96 49.0
Eucgr.C03324 Eucalyptus grandis HOM05D005533 ORTHO05D006700 3.9e-16 88.6 87 56.3
Zm00001eb423400 Zea mays HOM05D005533 ORTHO05D006700 3.9e-16 88.6 95 51.6
Aa31sc369G40 Aethionema arabicum HOM05D005533 ORTHO05D006700 5.1e-16 88.2 88 51.1
Peaxi162Scf00932g00010 Petunia axillaris HOM05D005533 ORTHO05D006700 5.1e-16 88.2 95 52.6
ClCG03G015010 Citrullus lanatus HOM05D005533 ORTHO05D006700 1.1e-15 87.0 135 39.3
MBI13_g43926_MAGBIO Magnolia biondii HOM05D005533 ORTHO05D006700 1.1e-15 87.0 96 51.0
PSO135G0664 Papaver somniferum HOM05D005533 ORTHO05D006700 1.9e-15 86.3 77 53.2
PSO724G0832 Papaver somniferum HOM05D005533 ORTHO05D006700 2.5e-15 85.9 98 42.9
PGSC0003DMG400002934 Solanum tuberosum HOM05D005533 ORTHO05D006700 3.3e-15 85.5 96 44.8
BcaC06g35941 Brassica carinata HOM05D005533 ORTHO05D006700 5.6e-15 84.7 87 51.7
C07p09520 Brassica napus HOM05D005533 ORTHO05D006700 5.6e-15 84.7 87 51.7
BolC7t41381H Brassica oleracea HOM05D005533 ORTHO05D006700 5.6e-15 84.7 87 51.7
BraA07t28431Z Brassica rapa HOM05D005533 ORTHO05D006700 9.6e-15 84.0 88 51.1
A07p06380 Brassica napus HOM05D005533 ORTHO05D006700 1.3e-14 83.6 88 51.1
FvH4_1g08870 Fragaria vesca HOM05D005533 ORTHO05D006700 1.3e-14 83.6 47 78.7
CAN.G1661.15 Capsicum annuum HOM05D005533 ORTHO05D006700 1.6e-14 83.2 96 45.8
Sopen12g004080 Solanum pennellii HOM05D005533 ORTHO05D006700 2.1e-14 82.8 99 44.4
Ciclev10006810m.g Citrus clementina HOM05D005533 ORTHO05D006700 2.8e-14 82.4 78 53.8
SalBow6G2818 Salvia bowleyana HOM05D005533 ORTHO05D006700 6.2e-14 81.3 97 45.4
ATR0598G004 Amborella trichopoda HOM05D005533 ORTHO05D006700 2.4e-13 79.3 106 41.5
Solyc12g009130.3 Solanum lycopersicum HOM05D005533 ORTHO05D006700 2.4e-13 79.3 97 43.3
Os03g0179700 Oryza sativa ssp. japonica HOM05D005533 ORTHO05D006700 6.9e-13 77.8 93 41.9
HPP92_016205 Vanilla planifolia HOM05D005533 ORTHO05D006700 1.5e-12 76.6 102 43.1
AL6G32190 Arabidopsis lyrata HOM05D005533 ORTHO05D006700 9.9e-12 73.9 101 41.6
AT5G20640 Arabidopsis thaliana HOM05D005533 ORTHO05D006700 1.3e-11 73.6 101 41.6
Zm00001eb401880 Zea mays HOM05D005533 ORTHO05D006700 1.3e-11 73.6 82 42.7
FAN28G1091 Fragaria x ananassa HOM05D008328 ORTHO05D003172 2.9e-11 72.4 41 85.4
Sp6g23840 Schrenkiella parvula HOM05D005533 ORTHO05D006700 2.9e-11 72.4 103 43.7
CARHR192150 Cardamine hirsuta HOM05D005533 ORTHO05D006700 3.8e-11 72.0 139 35.3
Nitab4.5_0010916g0040 Nicotiana tabacum HOM05D005533 ORTHO05D006700 3.8e-11 72.0 89 43.8
Sed0005482 Sechium edule HOM05D005533 ORTHO05D006700 4.9e-11 71.6 80 50.0
Nitab4.5_0000073g0120 Nicotiana tabacum HOM05D005533 ORTHO05D006700 8.4e-11 70.9 89 43.8
BcaB05g22825 Brassica carinata HOM05D005533 ORTHO05D006700 5.4e-10 68.2 72 47.2
BcaC03g13783 Brassica carinata HOM05D005533 ORTHO05D006700 5.4e-10 68.2 142 33.8
A02p06400 Brassica napus HOM05D005533 ORTHO05D006700 5.4e-10 68.2 142 33.8
BNapus_Darmor_BZH_scaffold_38p01420 Brassica napus HOM05D005533 ORTHO05D006700 5.4e-10 68.2 142 33.8
BraA02t05585Z Brassica rapa HOM05D005533 ORTHO05D006700 5.4e-10 68.2 142 33.8
BolC2t07056H Brassica oleracea HOM05D005533 ORTHO05D006700 7.1e-10 67.8 143 33.6
Carub.0006s1898 Capsella rubella HOM05D005533 ORTHO05D006700 9.3e-10 67.4 101 39.6
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 1.9e-07 59.7 84 36.9
Dinv42401 Davidia involucrata HOM05D005533 ORTHO05D006700 9.6e-07 57.4 48 56.2
SEGI_37243 Sequoiadendron giganteum HOM05D005533 ORTHO05D006700 2.1e-06 56.2 96 36.5
SEGI_28222 Sequoiadendron giganteum HOM05D005533 ORTHO05D006700 6.2e-06 54.7 86 32.6


User provided reference genes

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