Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 2.3e-213 745.3 393 100.0
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 3.9e-144 515.4 350 79.4
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 1.0e-136 490.7 342 77.5
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 3.6e-134 482.3 346 76.3
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 1.6e-126 456.8 337 73.0
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 8.1e-126 454.5 337 72.7
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 7.6e-116 421.4 330 69.7
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 4.6e-113 412.1 332 68.4
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 1.5e-103 380.6 339 64.3
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 1.4e-98 364.0 340 62.4
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 1.9e-98 363.6 360 60.6
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 5.5e-98 362.1 341 63.6
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 1.4e-96 357.5 341 61.6
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 3.0e-96 356.3 347 61.1
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 1.6e-92 344.0 350 58.0
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 1.3e-91 340.9 335 60.3
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 3.3e-87 326.2 347 57.9
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 8.2e-86 321.6 346 57.2
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 1.0e-83 314.7 335 55.8
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 2.2e-83 313.5 300 60.7
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 7.2e-82 308.5 339 56.9
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 3.0e-80 303.1 340 54.1
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 6.8e-80 302.0 266 64.3
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 6.3e-78 295.4 339 54.3
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 4.1e-77 292.7 344 53.2
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 5.9e-76 288.9 333 52.3
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 1.0e-75 288.1 306 55.6
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 4.2e-74 282.7 329 52.9
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 5.5e-74 282.3 348 51.7
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 5.5e-74 282.3 342 52.9
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 9.5e-74 281.6 329 52.6
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 9.5e-74 281.6 343 51.9
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 2.8e-73 280.0 337 51.3
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 8.0e-73 278.5 341 50.7
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 7.5e-71 271.9 340 50.9
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 1.7e-70 270.8 347 49.6
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 2.8e-70 270.0 329 52.0
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 3.3e-66 256.5 351 50.7
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 2.8e-65 253.4 319 50.8
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 3.6e-65 253.1 352 49.7
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 8.9e-64 248.4 275 55.6
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 2.6e-63 246.9 357 47.6
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 3.7e-62 243.0 339 47.5
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 4.9e-62 242.7 354 46.9
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 4.9e-62 242.7 364 48.1
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.6e-60 237.7 353 48.7
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 2.0e-60 237.3 344 45.9
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 3.5e-60 236.5 337 46.9
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 4.6e-60 236.1 329 47.7
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 6.0e-60 235.7 261 51.7
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 7.8e-60 235.3 350 44.9
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 3.0e-59 233.4 350 46.0
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 5.0e-59 232.6 233 56.7
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 5.0e-59 232.6 349 44.1
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 5.0e-59 232.6 339 46.9
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 1.5e-58 231.1 348 42.5
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 1.5e-58 231.1 350 45.7
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 1.9e-58 230.7 348 45.4
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 9.5e-58 228.4 343 45.8
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 2.8e-57 226.9 345 44.9
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 8.0e-57 225.3 330 47.9
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 8.0e-57 225.3 339 45.4
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 8.0e-57 225.3 332 47.3
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 8.0e-57 225.3 336 46.1
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 1.1e-56 224.9 302 46.0
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 3.1e-56 223.4 356 44.7
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 4.0e-56 223.0 352 43.8
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 5.2e-56 222.6 336 45.8
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 6.8e-56 222.2 337 46.3
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 1.5e-55 221.1 357 44.5
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 1.5e-55 221.1 315 47.3
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 1.5e-55 221.1 353 43.3
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 3.4e-55 219.9 346 45.4
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 4.4e-55 219.5 330 47.0
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 7.5e-55 218.8 315 47.0
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 2.2e-54 217.2 331 47.1
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 4.9e-54 216.1 345 44.1
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 4.9e-54 216.1 328 46.3
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 8.3e-54 215.3 331 46.5
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 3.2e-53 213.4 345 46.1
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 3.2e-53 213.4 348 43.1
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 7.0e-53 212.2 336 46.1
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 1.2e-52 211.5 360 43.1
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 1.6e-52 211.1 356 44.4
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 2.0e-52 210.7 341 43.4
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 2.0e-52 210.7 315 45.1
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 6.0e-52 209.1 316 46.8
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 2.3e-51 207.2 333 45.9
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 3.9e-51 206.5 333 44.4
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 6.6e-51 205.7 307 44.6
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 2.5e-50 203.8 317 46.1
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 9.5e-50 201.8 351 42.5
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 2.1e-49 200.7 337 43.6
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.8e-48 197.6 311 44.1
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 2.3e-48 197.2 347 41.8
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 8.9e-48 195.3 344 41.6
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 8.9e-48 195.3 316 44.9
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 2.0e-47 194.1 345 41.7
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 4.4e-47 193.0 306 43.1
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 5.8e-47 192.6 338 41.4
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 2.9e-46 190.3 311 43.1
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 1.1e-45 188.3 305 43.0
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 1.1e-45 188.3 248 47.2
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 4.1e-45 186.4 308 43.2
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 4.1e-45 186.4 339 41.6
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 9.2e-45 185.3 232 50.0
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 3.5e-44 183.3 333 42.0
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 4.6e-44 183.0 299 42.1
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 7.8e-44 182.2 318 42.1
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 1.7e-43 181.0 278 43.5
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 3.9e-43 179.9 321 42.1
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 5.1e-43 179.5 346 39.3
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 8.6e-43 178.7 277 43.3
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 1.1e-42 178.3 237 47.3
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.5e-42 177.9 319 42.0
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 1.5e-42 177.9 298 41.3
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 1.9e-42 177.6 339 39.8
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 5.6e-42 176.0 336 40.8
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 9.5e-42 175.3 251 44.2
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 9.5e-42 175.3 319 42.3
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 9.5e-42 175.3 315 41.0
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.6e-41 174.5 263 44.1
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 6.2e-41 172.6 298 39.9
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 1.1e-40 171.8 340 36.2
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.1e-40 171.8 305 40.3
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 4.4e-39 166.4 270 44.4
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 9.9e-39 165.2 209 50.7
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 9.9e-39 165.2 429 34.3
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 3.8e-38 163.3 224 49.1
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 8.4e-38 162.2 299 42.5
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 9.2e-37 158.7 337 37.4
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 2.7e-36 157.1 249 41.8
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 4.6e-36 156.4 315 38.7
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 6.6e-35 152.5 358 36.9
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 8.7e-35 152.1 290 40.7
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 3.3e-34 150.2 270 41.9
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 8.1e-33 145.6 328 39.0
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 8.4e-30 135.6 299 39.1
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 1.4e-29 134.8 321 37.4
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 1.0e-27 128.6 294 35.4
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 6.6e-27 125.9 320 34.1
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 1.5e-26 124.8 194 42.3
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 3.1e-24 117.1 215 39.1
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 4.0e-24 116.7 329 34.7
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 6.9e-24 115.9 322 32.6
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 5.8e-23 112.8 291 35.1
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 1.3e-22 111.7 162 42.0
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 1.7e-22 111.3 105 59.0
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 3.8e-22 110.2 127 53.5
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 2.4e-21 107.5 239 38.9
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 1.4e-16 91.7 82 62.2
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 9.0e-16 89.0 189 37.6
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 1.7e-14 84.7 256 31.6
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 3.9e-11 73.6 56 58.9
COL.COLO4_09197 Corchorus olitorius HOM05D004643 ORTHO05D005535 1.2e-07 62.0 78 48.7
Sabra03G0040400 Salix brachista HOM05D001047 ORTHO05D000768 4.5e-07 60.1 137 35.0
SalBow6G1905 Salvia bowleyana HOM05D001047 ORTHO05D000768 2.9e-06 57.4 245 28.2
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 3.8e-06 57.0 96 40.6


User provided reference genes

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