Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 1.1e-207 726.5 387 100.0
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 4.5e-161 571.6 340 81.8
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 1.4e-159 566.6 340 80.9
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 5.9e-145 518.1 394 73.1
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 5.9e-137 491.5 397 69.5
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 7.2e-135 484.6 346 71.7
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 7.2e-135 484.6 346 71.7
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 7.2e-135 484.6 346 71.7
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 7.2e-135 484.6 346 71.7
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 9.5e-135 484.2 346 71.4
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 9.5e-127 457.6 341 66.3
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 1.2e-124 450.7 341 64.8
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 5.8e-124 448.4 341 65.1
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 1.9e-119 433.3 342 62.6
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 1.0e-112 411.0 342 60.2
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 1.4e-109 400.6 340 59.1
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 5.2e-109 398.7 347 61.1
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 1.5e-108 397.1 337 59.3
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 1.5e-108 397.1 343 59.5
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 3.2e-106 389.4 341 58.1
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 3.2e-106 389.4 342 59.6
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 4.1e-106 389.0 341 60.1
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 9.2e-106 387.9 340 59.7
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 3.5e-105 386.0 335 60.9
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 3.5e-105 386.0 340 60.9
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 2.3e-104 383.3 340 57.9
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 2.3e-104 383.3 338 58.9
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 6.6e-104 381.7 338 58.3
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 2.5e-103 379.8 343 57.1
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 6.2e-102 375.2 339 58.4
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 1.1e-101 374.4 348 57.2
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 5.2e-101 372.1 335 58.2
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 4.4e-100 369.0 341 53.4
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 5.8e-100 368.6 337 57.0
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 1.7e-99 367.1 341 55.1
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 1.7e-99 367.1 349 54.4
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 1.7e-99 367.1 349 54.7
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 2.2e-99 366.7 342 55.8
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 1.2e-97 360.9 341 56.3
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 2.7e-97 359.8 336 54.2
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 4.6e-97 359.0 341 53.7
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 4.6e-97 359.0 341 53.7
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 1.7e-96 357.1 340 55.6
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 3.0e-96 356.3 349 54.2
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 5.1e-96 355.5 337 53.7
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 4.3e-95 352.4 342 53.8
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 1.1e-93 347.8 346 53.2
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 1.4e-93 347.4 348 52.9
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 2.4e-93 346.7 341 53.1
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 2.4e-93 346.7 352 53.7
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 3.1e-93 346.3 327 54.1
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 4.4e-92 342.4 343 53.1
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 5.8e-92 342.0 339 52.2
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 7.6e-92 341.7 337 54.0
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 9.9e-92 341.3 352 52.8
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 2.2e-91 340.1 344 54.1
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 2.2e-91 340.1 327 52.9
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 2.9e-91 339.7 320 55.6
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 7.1e-90 335.1 343 56.6
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 3.3e-87 326.2 344 50.6
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 1.1e-85 321.2 346 51.2
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 1.4e-85 320.9 328 52.7
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 3.1e-85 319.7 336 49.4
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 1.2e-84 317.8 340 49.1
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 1.7e-83 313.9 343 49.6
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 4.6e-81 305.8 341 48.1
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 6.0e-81 305.4 345 49.6
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 3.3e-79 299.7 304 51.0
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 4.8e-78 295.8 346 46.5
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 8.1e-78 295.0 344 48.5
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 3.4e-76 289.7 331 48.3
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 9.9e-76 288.1 348 44.3
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 2.2e-75 287.0 346 46.5
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 2.2e-75 287.0 351 47.3
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 2.7e-73 280.0 349 46.4
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 3.5e-73 279.6 242 61.2
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 4.6e-73 279.3 327 45.3
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 1.0e-72 278.1 326 47.5
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 1.3e-72 277.7 385 39.2
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 1.1e-71 274.6 350 46.0
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 1.5e-71 274.2 324 47.8
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 5.6e-71 272.3 293 48.8
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 1.6e-70 270.8 331 46.5
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 1.6e-70 270.8 331 46.5
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 1.6e-70 270.8 331 46.5
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 9.0e-69 265.0 322 47.5
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 2.6e-68 263.5 321 45.8
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 2.6e-68 263.5 321 45.8
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 4.5e-68 262.7 327 46.8
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 1.7e-67 260.8 340 43.8
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 8.4e-67 258.5 342 46.5
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 2.5e-66 256.9 325 44.6
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 7.9e-65 251.9 323 47.7
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 5.7e-63 245.7 352 41.5
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 3.8e-59 233.0 239 51.9
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 2.5e-58 230.3 220 53.2
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 1.6e-57 227.6 318 44.0
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 2.3e-56 223.8 249 47.4
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 2.0e-55 220.7 317 41.0
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 4.8e-54 216.1 338 39.3
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 8.2e-54 215.3 347 38.6
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 8.8e-48 195.3 331 37.5
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 1.8e-45 187.6 332 34.6
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 3.1e-45 186.8 317 37.5
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 3.2e-42 176.8 326 35.3
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 7.2e-42 175.6 242 41.7
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 2.1e-41 174.1 351 37.0
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 1.8e-40 171.0 131 58.8
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 8.8e-40 168.7 272 40.4
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 5.3e-37 159.5 328 33.2
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 2.2e-35 154.1 176 49.4
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 9.4e-34 148.7 161 45.3
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 8.0e-33 145.6 216 36.6
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 1.5e-31 141.4 144 47.2
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 5.3e-29 132.9 269 33.8
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 5.5e-26 122.9 92 58.7
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 9.8e-23 112.1 78 60.3
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 2.5e-18 97.4 109 47.7
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 2.5e-18 97.4 109 47.7
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 4.2e-18 96.7 109 44.0
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 4.2e-18 96.7 109 44.0
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 5.5e-18 96.3 120 43.3
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 1.2e-17 95.1 109 46.8
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 2.1e-17 94.4 108 45.4
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 2.1e-17 94.4 108 46.3
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 2.1e-17 94.4 108 45.4
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 6.1e-17 92.8 110 47.3
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 1.8e-16 91.3 121 42.1
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 1.8e-16 91.3 96 46.9
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 5.2e-16 89.7 87 55.2
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 7.5e-15 85.9 61 67.2
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 2.4e-13 80.9 98 42.9
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 1.2e-12 78.6 146 31.5
Haze_20405 Corylus avellana HOM05D005574 ORTHO05D007102 2.3e-11 74.3 66 54.5
BcaC07g42130 Brassica carinata HOM05D005574 ORTHO05D007102 9.8e-07 58.9 81 39.5
SEGI_33465 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 3.7e-06 57.0 54 51.9


User provided reference genes

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