Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G015300 Prunus persica HOM05D003253 ORTHO05D002078 6.7e-229 797.0 396 100.0
MD13G1194400 Malus domestica HOM05D003253 ORTHO05D002078 1.9e-146 523.1 355 76.1
FAN12G2226 Fragaria x ananassa HOM05D003253 ORTHO05D002078 4.8e-142 508.4 356 72.5
FvH4_4g16310 Fragaria vesca HOM05D003253 ORTHO05D002078 1.4e-141 506.9 356 72.2
RcHm_v2.0_Chr4g0416001 Rosa chinensis HOM05D003253 ORTHO05D002078 4.5e-140 501.9 356 73.6
FAN22G0721 Fragaria x ananassa HOM05D003253 ORTHO05D002078 2.2e-139 499.6 356 71.6
FAN07G1764 Fragaria x ananassa HOM05D003253 ORTHO05D002078 2.5e-138 496.1 356 70.8
QL06p002114 Quercus lobata HOM05D003253 ORTHO05D002078 3.7e-126 455.7 361 65.9
Cfa015661 Carpinus fangiana HOM05D003253 ORTHO05D002078 4.2e-122 442.2 343 67.9
Haze_00887 Corylus avellana HOM05D003253 ORTHO05D002078 4.2e-122 442.2 343 67.6
CiPaw.02G097800 Carya illinoinensis HOM05D003253 ORTHO05D002078 2.7e-113 412.9 343 62.4
Manes.03G177500 Manihot esculenta HOM05D003253 ORTHO05D002078 2.3e-112 409.8 342 62.3
Thecc.04G233500 Theobroma cacao HOM05D003253 ORTHO05D002078 6.7e-112 408.3 369 59.6
CiPaw.01G167300 Carya illinoinensis HOM05D003253 ORTHO05D002078 2.0e-111 406.8 340 63.2
Duzib052G0544 Durio zibethinus HOM05D003253 ORTHO05D002078 9.7e-111 404.4 369 58.3
Sabra10G0056900 Salix brachista HOM05D003253 ORTHO05D002078 4.8e-110 402.1 379 58.6
TWI53G2057 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 5.3e-109 398.7 369 56.6
CSS0040917 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 9.1e-109 397.9 340 62.6
CANSAT78G2304 Cannabis sativa HOM05D003253 ORTHO05D002078 2.7e-108 396.4 344 61.3
TAR633G1510 Trochodendron aralioides HOM05D003253 ORTHO05D002078 5.9e-108 395.2 376 58.8
Actinidia25640 Actinidia chinensis HOM05D003253 ORTHO05D002078 5.0e-107 392.1 338 61.8
Actinidia35276 Actinidia chinensis HOM05D003253 ORTHO05D002078 5.0e-107 392.1 338 61.8
Gohir.A09G056601 Gossypium hirsutum HOM05D003253 ORTHO05D002078 2.5e-106 389.8 349 59.3
Gohir.D09G055900 Gossypium hirsutum HOM05D003253 ORTHO05D002078 2.7e-105 386.3 349 58.7
RhsimUnG0259000 Rhododendron simsii HOM05D003253 ORTHO05D002078 1.1e-101 374.4 348 58.0
Oeu049061.1 Olea europaea HOM05D003253 ORTHO05D002078 1.4e-101 374.0 350 58.6
Actinidia25641 Actinidia chinensis HOM05D003253 ORTHO05D002078 2.4e-101 373.2 350 57.4
Actinidia35275 Actinidia chinensis HOM05D003253 ORTHO05D002078 2.4e-101 373.2 350 57.4
COL.COLO4_21490 Corchorus olitorius HOM05D003253 ORTHO05D002078 3.1e-101 372.9 387 54.5
Hma1.2p1_0602F.1_g187400 Hydrangea macrophylla HOM05D003253 ORTHO05D002078 5.4e-101 372.1 339 60.2
Nitab4.5_0001920g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 1.0e-99 367.9 335 57.0
Nitab4.5_0001342g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 1.7e-99 367.1 344 56.7
Gorai.006G069200 Gossypium raimondii HOM05D003253 ORTHO05D002078 2.3e-99 366.7 388 52.8
GSVIVG01017993001 Vitis vinifera HOM05D003253 ORTHO05D002078 2.3e-99 366.7 366 53.8
PGSC0003DMG400032262 Solanum tuberosum HOM05D003253 ORTHO05D002078 3.3e-98 362.8 338 57.4
TWI09G0550 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 5.5e-98 362.1 360 53.9
Solyc09g082140.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 9.5e-98 361.3 338 56.2
Lj6C607G12 Lonicera japonica HOM05D003253 ORTHO05D002078 1.6e-97 360.5 342 56.4
Sopen09g031020 Solanum pennellii HOM05D003253 ORTHO05D002078 1.6e-97 360.5 338 56.5
Cpa.g.sc1512.1 Carica papaya HOM05D003253 ORTHO05D002078 2.1e-97 360.1 348 56.3
Peaxi162Scf00092g00617 Petunia axillaris HOM05D003253 ORTHO05D002078 1.4e-96 357.5 353 53.8
Nn1g02344 Nelumbo nucifera HOM05D003253 ORTHO05D002078 3.4e-95 352.8 347 57.1
DCAR_002383 Daucus carota HOM05D003253 ORTHO05D002078 4.4e-95 352.4 337 54.6
Sp1g04290 Schrenkiella parvula HOM05D003253 ORTHO05D002078 1.7e-94 350.5 337 54.9
Dinv14001 Davidia involucrata HOM05D003253 ORTHO05D002078 4.9e-94 349.0 284 66.2
vmacro09557 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 4.9e-94 349.0 347 55.9
CsaV3_3G013260 Cucumis sativus L. HOM05D003253 ORTHO05D002078 6.3e-94 348.6 370 53.0
Ciclev10004835m.g Citrus clementina HOM05D003253 ORTHO05D002078 1.4e-93 347.4 339 54.9
ClCG05G005130 Citrullus lanatus HOM05D003253 ORTHO05D002078 2.4e-93 346.7 369 53.4
Sed0019594 Sechium edule HOM05D003253 ORTHO05D002078 9.2e-93 344.7 338 55.9
Sed0023955 Sechium edule HOM05D003253 ORTHO05D002078 2.7e-92 343.2 356 54.5
vmacro09558 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 3.5e-92 342.8 331 57.7
Eucgr.H03453 Eucalyptus grandis HOM05D003253 ORTHO05D002078 1.0e-91 341.3 338 54.1
AL1G15260 Arabidopsis lyrata HOM05D003253 ORTHO05D002078 1.7e-91 340.5 337 53.7
Cc03_g03900 Coffea canephora HOM05D003253 ORTHO05D002078 3.9e-91 339.3 349 52.7
Thhalv10007544m.g Eutrema salsugineum HOM05D003253 ORTHO05D002078 5.0e-91 339.0 351 52.7
Sc19g0004070 Simmondsia chinensis HOM05D003253 ORTHO05D002078 6.6e-91 338.6 364 49.7
TWI73G0819 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 1.9e-90 337.0 401 48.9
SalBow3G1993 Salvia bowleyana HOM05D003253 ORTHO05D002078 3.3e-90 336.3 350 54.0
Eucgr.H03454 Eucalyptus grandis HOM05D003253 ORTHO05D002078 4.3e-90 335.9 343 53.9
AT1G05410 Arabidopsis thaliana HOM05D003253 ORTHO05D002078 5.6e-90 335.5 337 53.1
MSTRG.24737 Avicennia marina HOM05D003253 ORTHO05D002078 1.2e-89 334.3 339 53.7
BcaB02g06862 Brassica carinata HOM05D003253 ORTHO05D002078 1.2e-89 334.3 356 52.5
MELO3C006528.2 Cucumis melo HOM05D003253 ORTHO05D002078 1.6e-89 334.0 370 52.2
Glyma.01G237400 Glycine max HOM05D003253 ORTHO05D002078 3.6e-89 332.8 336 54.2
arahy.Tifrunner.gnm1.ann1.2A778E Arachis hypogaea HOM05D003253 ORTHO05D002078 4.7e-89 332.4 345 51.9
arahy.Tifrunner.gnm1.ann1.ETQ115 Arachis hypogaea HOM05D003253 ORTHO05D002078 4.7e-89 332.4 345 51.3
MBI12_g36454_MAGBIO Magnolia biondii HOM05D003253 ORTHO05D002078 4.7e-89 332.4 348 54.6
Aqoxy5G00455 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 3.1e-88 329.7 351 53.8
A10p04120 Brassica napus HOM05D003253 ORTHO05D002078 8.9e-88 328.2 335 54.3
Glyma.11G006000 Glycine max HOM05D003253 ORTHO05D002078 1.5e-87 327.4 365 51.0
Glyma.18G119500 Glycine max HOM05D003253 ORTHO05D002078 1.5e-87 327.4 336 53.3
Carub.0001s0475 Capsella rubella HOM05D003253 ORTHO05D002078 4.4e-87 325.9 337 52.2
C05p03760 Brassica napus HOM05D003253 ORTHO05D002078 7.5e-87 325.1 366 50.8
BolC5t29153H Brassica oleracea HOM05D003253 ORTHO05D002078 1.3e-86 324.3 339 53.7
CAN.G1094.7 Capsicum annuum HOM05D003253 ORTHO05D002078 1.3e-86 324.3 360 50.6
Migut.N00190 Erythranthe guttata HOM05D003253 ORTHO05D002078 1.7e-86 323.9 328 56.4
Aa31LG1G19210 Aethionema arabicum HOM05D003253 ORTHO05D002078 3.7e-86 322.8 371 48.0
PGR004G0591 Punica granatum HOM05D003253 ORTHO05D002078 2.4e-85 320.1 361 49.6
Lalb_Chr09g0319891 Lupinus albus HOM05D003253 ORTHO05D002078 5.4e-85 318.9 340 53.2
ECA240G1510 Erigeron canadensis HOM05D003253 ORTHO05D002078 7.0e-85 318.5 333 49.2
THA.LOC104800959 Tarenaya hassleriana HOM05D003253 ORTHO05D002078 2.0e-84 317.0 339 50.4
BraA10t42682Z Brassica rapa HOM05D003253 ORTHO05D002078 1.7e-83 313.9 365 49.6
Ca_24401_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 1.7e-83 313.9 350 50.3
Lalb_Chr05g0211011 Lupinus albus HOM05D003253 ORTHO05D002078 4.3e-82 309.3 340 50.6
Psat6g188240 Pisum sativum HOM05D003253 ORTHO05D002078 2.8e-81 306.6 339 48.1
Psat0s3046g0120 Pisum sativum HOM05D003253 ORTHO05D002078 8.0e-81 305.1 341 47.8
PGR004G0723 Punica granatum HOM05D003253 ORTHO05D002078 1.1e-80 304.7 359 48.7
BcaC05g24390 Brassica carinata HOM05D003253 ORTHO05D002078 1.4e-80 304.3 315 54.0
VMungo1215G2555 Vigna mungo HOM05D003253 ORTHO05D002078 1.4e-80 304.3 341 49.3
Aqoxy2G03403 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 1.8e-80 303.9 352 48.0
TPR.G5553 Trifolium pratense HOM05D003253 ORTHO05D002078 2.3e-80 303.5 336 48.5
Lsat_1_v5_gn_7_64380 Lactuca sativa HOM05D003253 ORTHO05D002078 4.0e-80 302.8 341 47.2
PSO761G0482 Papaver somniferum HOM05D003253 ORTHO05D002078 8.9e-80 301.6 344 51.2
Psat6g206800 Pisum sativum HOM05D003253 ORTHO05D002078 2.0e-79 300.4 341 47.2
AUR62025569 Chenopodium quinoa HOM05D003253 ORTHO05D002078 7.5e-79 298.5 371 45.6
DCAR_027222 Daucus carota HOM05D003253 ORTHO05D002078 5.4e-77 292.4 356 47.2
PSO210G1140 Papaver somniferum HOM05D003253 ORTHO05D002078 9.2e-77 291.6 356 48.6
PSO832G3307 Papaver somniferum HOM05D003253 ORTHO05D002078 9.2e-77 291.6 355 47.3
CARHR004920 Cardamine hirsuta HOM05D003253 ORTHO05D002078 1.2e-76 291.2 334 49.1
Medtr5g006390 Medicago truncatula HOM05D003253 ORTHO05D002078 2.1e-76 290.4 344 46.2
HanXRQChr09g0248261 Helianthus annuus HOM05D003253 ORTHO05D002078 4.6e-76 289.3 344 45.1
AUR62008677 Chenopodium quinoa HOM05D003253 ORTHO05D002078 1.7e-75 287.3 398 43.2
Lalb_Chr25g0279741 Lupinus albus HOM05D003253 ORTHO05D002078 8.6e-75 285.0 353 48.2
Hund12120 Selenicereus undatus HOM05D003253 ORTHO05D002078 1.5e-74 284.3 346 46.2
PGR004G2151 Punica granatum HOM05D003253 ORTHO05D002078 5.6e-74 282.3 307 51.5
LjContig00408g0013219 Lotus japonicus HOM05D003253 ORTHO05D002078 7.3e-74 282.0 339 47.2
PSO210G5071 Papaver somniferum HOM05D003253 ORTHO05D002078 9.5e-74 281.6 339 46.9
BcaC05g24391 Brassica carinata HOM05D003253 ORTHO05D002078 3.6e-73 279.6 373 45.8
Medtr1g103600 Medicago truncatula HOM05D003253 ORTHO05D002078 8.9e-72 275.0 334 44.9
Ca_10889_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 2.6e-71 273.5 338 46.2
Ca_30336_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 2.6e-71 273.5 338 46.2
DCAR_030641 Daucus carota HOM05D003253 ORTHO05D002078 1.3e-70 271.2 355 45.9
CSS0030672 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 2.2e-70 270.4 190 71.6
Phvul.002G045300 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 6.4e-70 268.9 344 46.8
Lj5g0003807 Lotus japonicus HOM05D003253 ORTHO05D002078 1.6e-68 264.2 346 46.2
TPR.G37995 Trifolium pratense HOM05D003253 ORTHO05D002078 2.1e-68 263.8 333 45.0
Psat4g210160 Pisum sativum HOM05D003253 ORTHO05D002078 7.8e-68 261.9 357 44.0
Potri.010G086600 Populus trichocarpa HOM05D003253 ORTHO05D002078 5.6e-66 255.8 181 69.6
Os03g0747200 Oryza sativa ssp. japonica HOM05D003253 ORTHO05D002078 3.6e-65 253.1 392 39.5
Zm00001eb057100 Zea mays HOM05D003253 ORTHO05D002078 6.2e-65 252.3 359 40.1
Dinv44542 Davidia involucrata HOM05D003253 ORTHO05D002078 1.8e-64 250.8 179 68.7
Phvul.002G044800 Phaseolus vulgaris HOM05D003253 ORTHO05D002078 3.4e-63 246.5 325 43.7
BcaB05g24280 Brassica carinata HOM05D003253 ORTHO05D002078 9.9e-63 245.0 251 54.2
PGR004G2032 Punica granatum HOM05D003253 ORTHO05D002078 9.9e-63 245.0 285 49.5
ATR0697G249 Amborella trichopoda HOM05D003253 ORTHO05D002078 1.1e-61 241.5 330 46.1
BcaB05g24279 Brassica carinata HOM05D003253 ORTHO05D002078 5.3e-56 222.6 239 53.1
Nitab4.5_0000321g0110 Nicotiana tabacum HOM05D003253 ORTHO05D002078 5.3e-56 222.6 170 63.5
Nitab4.5_0008118g0010 Nicotiana tabacum HOM05D003253 ORTHO05D002078 4.4e-55 219.5 170 63.5
Peaxi162Scf00192g00112 Petunia axillaris HOM05D003253 ORTHO05D002078 1.3e-54 218.0 170 62.9
PGSC0003DMG400023100 Solanum tuberosum HOM05D003253 ORTHO05D002078 4.6e-52 209.5 188 55.3
PGSC0003DMG400030174 Solanum tuberosum HOM05D003253 ORTHO05D002078 5.1e-51 206.1 170 60.6
CAN.G231.2 Capsicum annuum HOM05D003253 ORTHO05D002078 8.7e-51 205.3 169 60.9
HPP92_009611 Vanilla planifolia HOM05D003253 ORTHO05D002078 1.1e-50 204.9 306 41.5
Solyc06g054200.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.8e-48 197.6 188 53.2
PGSC0003DMG400006740 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.8e-48 197.6 170 58.2
Solyc06g054230.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 5.3e-48 196.1 179 57.5
SGA_v2.0_scaffold522G52706 Striga asiatica HOM05D003253 ORTHO05D002078 2.6e-47 193.7 174 57.5
Sopen06g019350 Solanum pennellii HOM05D003253 ORTHO05D002078 1.7e-46 191.0 171 58.5
DCAR_027225 Daucus carota HOM05D003253 ORTHO05D002078 2.2e-46 190.7 270 41.1
CARHR054160 Cardamine hirsuta HOM05D003253 ORTHO05D002078 1.1e-45 188.3 170 51.8
Sopen09g023100 Solanum pennellii HOM05D003253 ORTHO05D002078 1.4e-45 188.0 153 58.8
DCAR_027224 Daucus carota HOM05D003253 ORTHO05D002078 1.9e-45 187.6 251 44.6
Sopen06g019340 Solanum pennellii HOM05D003253 ORTHO05D002078 1.9e-45 187.6 184 53.3
Solyc06g054160.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.2e-45 186.4 184 53.3
Solyc06g054180.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.6e-44 184.5 207 49.3
Solyc09g061370.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 7.4e-42 175.6 168 54.8
PGSC0003DMG400041970 Solanum tuberosum HOM05D003253 ORTHO05D002078 1.3e-41 174.9 170 54.1
Cc06_g18330 Coffea canephora HOM05D003253 ORTHO05D002078 3.7e-41 173.3 144 59.7
Sopen09g024540 Solanum pennellii HOM05D003253 ORTHO05D002078 4.8e-41 172.9 164 54.3
PGSC0003DMG400016262 Solanum tuberosum HOM05D003253 ORTHO05D002078 3.1e-40 170.2 145 58.6
Solyc09g061260.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 5.3e-40 169.5 149 56.4
Cpa.g.sc58.96 Carica papaya HOM05D003253 ORTHO05D002078 2.1e-36 157.5 239 41.0
Sopen09g024360 Solanum pennellii HOM05D003253 ORTHO05D002078 3.5e-36 156.8 146 54.1
DCAR_027223 Daucus carota HOM05D003253 ORTHO05D002078 5.7e-34 149.4 194 44.8
Solyc09g059910.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 7.4e-34 149.1 146 50.7
SEGI_30321 Sequoiadendron giganteum HOM05D003253 ORTHO05D002078 1.2e-31 141.7 177 44.6
Solyc09g059740.3 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.4e-31 140.2 126 54.0
Atru.chr4.2451 Acer truncatum HOM05D003253 ORTHO05D002078 1.1e-29 135.2 153 51.0
PGSC0003DMG400030176 Solanum tuberosum HOM05D003253 ORTHO05D002078 2.3e-27 127.5 160 46.9
PGSC0003DMG400030175 Solanum tuberosum HOM05D003253 ORTHO05D002078 3.3e-26 123.6 113 54.0
BcaC05g24388 Brassica carinata HOM05D003253 ORTHO05D002078 1.5e-23 114.8 113 57.5
Solyc09g059890.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.6e-23 114.0 110 52.7
SEGI_19972 Sequoiadendron giganteum HOM05D003253 ORTHO05D002078 8.5e-22 109.0 111 49.5
Solyc09g061590.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 4.2e-21 106.7 113 47.8
AagrBONN_evm.TU.Sc2ySwM_344.1597 Anthoceros agrestis HOM05D003253 ORTHO05D002078 7.2e-21 105.9 203 34.0
Pp3c9_22000 Physcomitrium patens HOM05D003253 ORTHO05D002078 2.7e-20 104.0 167 38.9
Pp3c9_22005 Physcomitrium patens HOM05D003253 ORTHO05D002078 2.7e-20 104.0 167 38.9
Pp3c15_9060 Physcomitrium patens HOM05D003253 ORTHO05D002078 4.3e-18 96.7 252 29.8
Solyc09g060020.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 2.2e-17 94.4 74 56.8
Solyc09g061580.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 6.3e-17 92.8 102 49.0
TPR.G37906 Trifolium pratense HOM05D003253 ORTHO05D002664 1.4e-16 91.7 148 37.8
Solyc09g061500.2 Solanum lycopersicum HOM05D003253 ORTHO05D002078 3.1e-16 90.5 128 41.4
TPR.G5474 Trifolium pratense HOM05D003253 ORTHO05D002078 2.0e-15 87.8 113 45.1
Solyc09g061540.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.7e-14 84.7 102 47.1
Solyc09g059870.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.9e-13 81.3 87 46.0
Solyc09g061600.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 9.4e-13 79.0 79 50.6
CARHR054150 Cardamine hirsuta HOM05D003253 ORTHO05D002078 1.1e-10 72.0 100 44.0
CBR_g48542 Chara braunii HOM05D003253 ORTHO05D002078 5.7e-10 69.7 215 27.4
Solyc09g060060.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.7e-09 68.2 60 55.0
Solyc09g060010.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.1e-08 65.5 50 58.0
CSS0029369 Camellia sinensis var. sinensis HOM05D000222 ORTHO05D003997 2.0e-07 61.2 149 27.5
unitig_32.g11054 Utricularia gibba HOM05D000222 ORTHO05D003997 2.0e-07 61.2 153 30.1
Solyc09g059900.1 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.7e-06 58.2 54 53.7


User provided reference genes

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