Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 1.2e-72 276.6 150 100.0
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 3.5e-69 265.0 148 95.9
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.4e-62 243.0 150 88.7
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 1.9e-62 242.7 150 89.3
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 1.9e-62 242.7 150 89.3
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 2.4e-62 242.3 150 88.7
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 2.1e-61 239.2 150 88.0
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.1e-61 239.2 150 88.0
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.1e-61 239.2 150 87.3
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 2.7e-61 238.8 147 85.0
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 6.0e-61 237.7 150 86.0
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 1.9e-59 232.6 148 83.8
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 4.3e-59 231.5 148 82.4
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 1.2e-58 229.9 144 85.4
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.6e-58 229.6 148 81.8
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 4.7e-58 228.0 149 83.2
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.8e-57 226.1 150 81.3
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.8e-57 226.1 148 81.1
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 1.8e-57 226.1 143 82.5
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 3.1e-57 225.3 147 84.4
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 4.0e-57 224.9 147 83.7
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 5.2e-57 224.6 148 82.4
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 5.2e-57 224.6 148 82.4
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 5.2e-57 224.6 148 81.8
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 5.2e-57 224.6 148 81.1
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 8.9e-57 223.8 147 80.3
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 8.9e-57 223.8 148 81.8
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 1.2e-56 223.4 146 82.9
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 1.5e-56 223.0 147 78.9
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 1.5e-56 223.0 147 83.0
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 1.5e-56 223.0 140 85.0
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 2.0e-56 222.6 148 81.8
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 2.6e-56 222.2 148 81.8
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.6e-56 222.2 148 81.1
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.6e-56 222.2 148 81.1
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 3.4e-56 221.9 147 81.0
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 3.4e-56 221.9 147 81.0
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 4.4e-56 221.5 148 80.4
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 5.8e-56 221.1 147 82.3
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 5.8e-56 221.1 143 81.1
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 7.6e-56 220.7 143 81.1
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 7.6e-56 220.7 147 81.0
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 7.6e-56 220.7 145 81.4
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 9.9e-56 220.3 140 83.6
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 1.3e-55 219.9 145 81.4
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 1.7e-55 219.5 144 80.6
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 2.9e-55 218.8 150 80.0
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 2.9e-55 218.8 147 81.6
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 2.9e-55 218.8 148 79.7
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 3.8e-55 218.4 145 80.7
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 3.8e-55 218.4 148 80.4
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 4.9e-55 218.0 147 81.0
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 6.4e-55 217.6 148 79.1
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 6.4e-55 217.6 148 79.1
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 8.4e-55 217.2 144 81.9
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 8.4e-55 217.2 140 84.3
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.9e-54 216.1 140 81.4
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 2.4e-54 215.7 144 77.1
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 3.2e-54 215.3 146 82.2
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 3.2e-54 215.3 140 80.7
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 3.2e-54 215.3 140 81.4
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 4.1e-54 214.9 141 82.3
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 4.1e-54 214.9 134 84.3
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 4.1e-54 214.9 145 79.3
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 4.1e-54 214.9 147 77.6
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 5.4e-54 214.5 148 79.1
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 5.4e-54 214.5 143 79.0
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 5.4e-54 214.5 148 77.7
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 7.1e-54 214.2 148 79.1
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 7.1e-54 214.2 148 79.1
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 9.2e-54 213.8 144 79.2
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 9.2e-54 213.8 144 76.4
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 1.6e-53 213.0 147 74.8
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 1.6e-53 213.0 143 79.0
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 2.1e-53 212.6 140 82.1
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 2.1e-53 212.6 143 78.3
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 2.1e-53 212.6 145 79.3
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 2.7e-53 212.2 143 81.1
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 4.6e-53 211.5 148 75.7
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 4.6e-53 211.5 143 78.3
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 7.8e-53 210.7 148 78.4
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 1.0e-52 210.3 147 75.5
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 1.0e-52 210.3 144 78.5
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 1.3e-52 209.9 149 77.2
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 1.3e-52 209.9 142 76.1
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.7e-52 209.5 145 74.5
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 2.3e-52 209.1 144 72.9
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 3.0e-52 208.8 145 78.6
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 8.6e-52 207.2 140 78.6
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 8.6e-52 207.2 140 78.6
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 1.9e-51 206.1 137 77.4
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 2.5e-51 205.7 140 75.7
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 3.3e-51 205.3 135 80.0
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 4.3e-51 204.9 141 76.6
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 7.3e-51 204.1 134 79.1
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 2.1e-50 202.6 142 76.8
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 2.8e-50 202.2 125 88.0
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 3.6e-50 201.8 147 74.1
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 4.7e-50 201.4 145 72.4
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 6.2e-50 201.1 145 72.4
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 8.1e-50 200.7 148 70.9
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 1.4e-49 199.9 142 76.1
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.4e-49 199.9 145 71.7
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 2.4e-49 199.1 142 74.6
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 2.0e-48 196.1 148 70.3
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 4.4e-48 194.9 143 73.4
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 3.8e-47 191.8 148 69.6
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 9.3e-46 187.2 116 82.8
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 2.1e-45 186.0 149 68.5
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 2.7e-45 185.7 150 66.7
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 3.0e-44 182.2 150 66.0
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 6.6e-44 181.0 119 79.8
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 4.3e-43 178.3 143 65.0
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 4.3e-43 178.3 139 68.3
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 4.3e-43 178.3 139 68.3
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 4.3e-43 178.3 139 68.3
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 5.6e-43 177.9 141 68.1
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 9.6e-43 177.2 146 65.8
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 1.3e-42 176.8 150 66.7
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 1.6e-42 176.4 134 67.9
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 1.6e-42 176.4 141 67.4
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 2.1e-42 176.0 140 65.0
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 2.1e-42 176.0 139 66.2
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 2.8e-42 175.6 134 67.9
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 4.8e-42 174.9 142 66.9
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 4.8e-42 174.9 150 66.0
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 6.2e-42 174.5 143 66.4
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 8.1e-42 174.1 138 63.8
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 2.4e-41 172.6 143 66.4
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 1.5e-40 169.9 148 60.8
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 1.3e-39 166.8 142 65.5
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 1.3e-39 166.8 142 65.5
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 3.8e-39 165.2 143 61.5
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 8.4e-39 164.1 150 62.0
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 1.9e-35 152.9 140 57.1
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 1.4e-33 146.7 132 59.8
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 4.5e-32 141.7 133 60.2
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 1.1e-30 137.1 140 53.6
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 2.3e-28 129.4 142 57.0
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 5.8e-24 114.8 89 68.5
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 7.6e-24 114.4 109 60.6
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 1.6e-21 106.7 135 39.3
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 3.9e-20 102.1 99 59.6
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 1.5e-19 100.1 136 39.7
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 1.1e-14 84.0 87 50.6
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 1.1e-11 73.9 46 80.4


User provided reference genes

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