Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G013400 Prunus persica HOM05D007072 ORTHO05D008841 3.3e-110 401.7 208 100.0
MD16G1193700 Malus domestica HOM05D007072 ORTHO05D008841 4.2e-89 331.6 206 86.4
Haze_00902 Corylus avellana HOM05D007072 ORTHO05D008841 4.8e-77 291.6 211 74.9
RcHm_v2.0_Chr4g0416241 Rosa chinensis HOM05D007072 ORTHO05D008841 1.8e-76 289.7 209 74.2
FvH4_4g15520 Fragaria vesca HOM05D007072 ORTHO05D008841 4.1e-76 288.5 209 74.6
FAN12G0870 Fragaria x ananassa HOM05D007072 ORTHO05D008841 4.1e-76 288.5 209 74.6
FAN07G0953 Fragaria x ananassa HOM05D007072 ORTHO05D008841 4.5e-75 285.0 209 73.7
Haze_03895 Corylus avellana HOM05D007072 ORTHO05D008841 5.0e-74 281.6 211 72.5
QL06p002505 Quercus lobata HOM05D007072 ORTHO05D008841 2.7e-72 275.8 210 71.0
CiPaw.01G165800 Carya illinoinensis HOM05D007072 ORTHO05D008841 2.3e-71 272.7 213 70.9
Dinv13993 Davidia involucrata HOM05D007072 ORTHO05D008841 2.0e-70 269.6 209 70.3
COL.COLO4_04736 Corchorus olitorius HOM05D007072 ORTHO05D008841 3.5e-67 258.8 207 67.1
Thecc.04G231900 Theobroma cacao HOM05D007072 ORTHO05D008841 1.3e-66 256.9 205 66.8
Manes.03G178700 Manihot esculenta HOM05D007072 ORTHO05D008841 2.3e-66 256.1 205 68.3
GSVIVG01017974001 Vitis vinifera HOM05D007072 ORTHO05D008841 2.3e-66 256.1 209 68.4
Atru.ctg752_3.79 Acer truncatum HOM05D007072 ORTHO05D008841 1.1e-65 253.8 198 71.2
CSS0014065 Camellia sinensis var. sinensis HOM05D007072 ORTHO05D008841 4.2e-65 251.9 209 66.0
Hma1.2p1_1344F.1_g277130 Hydrangea macrophylla HOM05D007072 ORTHO05D008841 7.2e-65 251.1 207 67.6
Eucgr.L01273 Eucalyptus grandis HOM05D007072 ORTHO05D008841 6.1e-64 248.1 209 65.6
Duzib212G0309 Durio zibethinus HOM05D007072 ORTHO05D008841 8.0e-64 247.7 203 65.0
Potri.008G152800 Populus trichocarpa HOM05D007072 ORTHO05D008841 1.8e-63 246.5 207 67.1
Eucgr.L02492 Eucalyptus grandis HOM05D007072 ORTHO05D008841 4.0e-63 245.4 209 65.1
Ciclev10005922m.g Citrus clementina HOM05D007072 ORTHO05D008841 8.9e-63 244.2 186 72.0
Glyma.08G203200 Glycine max HOM05D007072 ORTHO05D008841 1.2e-62 243.8 207 67.6
Sabra08G0116400 Salix brachista HOM05D007072 ORTHO05D008841 1.5e-62 243.4 236 60.6
Glyma.07G018200 Glycine max HOM05D007072 ORTHO05D008841 3.4e-62 242.3 207 67.1
Ca_10901_v3 Cicer arietinum L. HOM05D007072 ORTHO05D008841 5.7e-62 241.5 208 66.8
TPR.G5523 Trifolium pratense HOM05D007072 ORTHO05D008841 5.7e-62 241.5 184 73.4
CANSAT78G1446 Cannabis sativa HOM05D007072 ORTHO05D008841 7.5e-62 241.1 175 74.3
FAN22G0737 Fragaria x ananassa HOM05D007072 ORTHO05D008841 3.7e-61 238.8 207 65.2
VMungo0720G2696 Vigna mungo HOM05D007072 ORTHO05D008841 4.9e-61 238.4 207 66.2
Actinidia40146 Actinidia chinensis HOM05D007072 ORTHO05D008841 6.3e-61 238.0 182 68.1
Medtr1g103810 Medicago truncatula HOM05D007072 ORTHO05D008841 6.3e-61 238.0 186 72.6
Phvul.007G057300 Phaseolus vulgaris HOM05D007072 ORTHO05D008841 6.3e-61 238.0 207 66.2
HanXRQChr03g0062521 Helianthus annuus HOM05D007072 ORTHO05D008841 1.8e-60 236.5 196 65.3
DCAR_030636 Daucus carota HOM05D007072 ORTHO05D008841 5.4e-60 235.0 206 62.6
ECA240G2950 Erigeron canadensis HOM05D007072 ORTHO05D008841 9.2e-60 234.2 183 67.2
Nn4g26321 Nelumbo nucifera HOM05D007072 ORTHO05D008841 9.2e-60 234.2 210 64.3
Rhsim04G0202300 Rhododendron simsii HOM05D007072 ORTHO05D008841 1.2e-59 233.8 200 63.5
arahy.Tifrunner.gnm1.ann1.KKZ0LN Arachis hypogaea HOM05D007072 ORTHO05D008841 2.0e-59 233.0 185 70.3
arahy.Tifrunner.gnm1.ann1.0J3LZT Arachis hypogaea HOM05D007072 ORTHO05D008841 2.7e-59 232.6 186 70.4
TAR636G0958 Trochodendron aralioides HOM05D007072 ORTHO05D008841 4.5e-59 231.9 203 66.5
ClCG06G006220 Citrullus lanatus HOM05D007072 ORTHO05D008841 1.7e-58 229.9 206 63.1
PGR142G1968 Punica granatum HOM05D007072 ORTHO05D008841 5.0e-58 228.4 212 64.2
arahy.Tifrunner.gnm1.ann1.8ZA7N6 Arachis hypogaea HOM05D007072 ORTHO05D008841 6.6e-58 228.0 179 69.3
MELO3C012648.2 Cucumis melo HOM05D007072 ORTHO05D008841 6.6e-58 228.0 206 64.6
Lj3A735T48 Lonicera japonica HOM05D007072 ORTHO05D008841 6.6e-58 228.0 199 65.8
Lj5g0010864 Lotus japonicus HOM05D007072 ORTHO05D008841 6.6e-58 228.0 199 64.3
Cc03_g03760 Coffea canephora HOM05D007072 ORTHO05D008841 3.3e-57 225.7 189 63.5
CsaV3_7G022520 Cucumis sativus L. HOM05D007072 ORTHO05D008841 5.6e-57 224.9 203 63.1
Sed0002009 Sechium edule HOM05D007072 ORTHO05D008841 5.6e-57 224.9 184 69.6
Sc19g0004160 Simmondsia chinensis HOM05D007072 ORTHO05D008841 1.2e-56 223.8 208 58.7
PSO675G2050 Papaver somniferum HOM05D007072 ORTHO05D008841 1.6e-56 223.4 198 63.1
Psat6g207520 Pisum sativum HOM05D007072 ORTHO05D008841 1.6e-56 223.4 206 63.1
Gohir.A10G168700 Gossypium hirsutum HOM05D007072 ORTHO05D008841 2.1e-56 223.0 205 62.4
Gorai.011G195700 Gossypium raimondii HOM05D007072 ORTHO05D008841 4.7e-56 221.9 205 62.0
Hund12130 Selenicereus undatus HOM05D007072 ORTHO05D008841 4.7e-56 221.9 182 62.1
TWI09G0189 Tripterygium wilfordii HOM05D007072 ORTHO05D008841 4.7e-56 221.9 169 73.4
arahy.Tifrunner.gnm1.ann1.DZ7G8Z Arachis hypogaea HOM05D007072 ORTHO05D008841 8.0e-56 221.1 205 63.4
AUR62034750 Chenopodium quinoa HOM05D007072 ORTHO05D008841 1.4e-55 220.3 168 67.3
Oeu031231.1 Olea europaea HOM05D007072 ORTHO05D008841 1.4e-55 220.3 173 68.8
Gohir.D10G174900 Gossypium hirsutum HOM05D007072 ORTHO05D008841 1.8e-55 219.9 205 62.0
Aqoxy5G00468 Aquilegia oxysepala HOM05D007072 ORTHO05D008841 8.9e-55 217.6 199 64.3
CAN.G490.4 Capsicum annuum HOM05D007072 ORTHO05D008841 8.9e-55 217.6 199 60.3
Solyc09g076030.4 Solanum lycopersicum HOM05D007072 ORTHO05D008841 2.6e-54 216.1 184 64.7
PGSC0003DMG400030078 Solanum tuberosum HOM05D007072 ORTHO05D008841 2.6e-54 216.1 184 64.1
Migut.G00337 Erythranthe guttata HOM05D007072 ORTHO05D008841 3.4e-54 215.7 208 62.5
Peaxi162Scf00092g01012 Petunia axillaris HOM05D007072 ORTHO05D008841 4.4e-54 215.3 172 66.3
Lsat_1_v5_gn_7_66201 Lactuca sativa HOM05D007072 ORTHO05D008841 5.8e-54 214.9 183 63.9
Sopen09g030860 Solanum pennellii HOM05D007072 ORTHO05D008841 7.5e-54 214.5 201 60.2
SalBow2G0955 Salvia bowleyana HOM05D007072 ORTHO05D008841 2.9e-53 212.6 178 66.9
BcaB02g06864 Brassica carinata HOM05D007072 ORTHO05D008841 3.7e-53 212.2 208 59.6
EL10Ac2g03959 Beta vulgaris HOM05D007072 ORTHO05D008841 6.4e-53 211.5 184 62.0
EL10Ac4g08230 Beta vulgaris HOM05D007072 ORTHO05D008841 1.1e-52 210.7 188 60.6
PSO732G0121 Papaver somniferum HOM05D007072 ORTHO05D008841 1.1e-52 210.7 196 59.2
Sp1g04270 Schrenkiella parvula HOM05D007072 ORTHO05D008841 1.9e-52 209.9 206 56.3
Nitab4.5_0000043g0120 Nicotiana tabacum HOM05D007072 ORTHO05D008841 5.4e-52 208.4 170 65.9
Lalb_Chr02g0140581 Lupinus albus HOM05D007072 ORTHO05D008841 7.0e-52 208.0 145 76.6
THA.LOC104800963 Tarenaya hassleriana HOM05D007072 ORTHO05D008841 7.0e-52 208.0 166 67.5
BolC5t29149H Brassica oleracea HOM05D007072 ORTHO05D008841 2.7e-51 206.1 182 63.7
Aa31LG1G19230 Aethionema arabicum HOM05D007072 ORTHO05D008841 3.5e-51 205.7 211 59.2
C05p03740 Brassica napus HOM05D007072 ORTHO05D008841 3.5e-51 205.7 182 63.7
BraA10t42680Z Brassica rapa HOM05D007072 ORTHO05D008841 3.5e-51 205.7 206 59.2
Ah.04g154560 Amaranthus hybridus HOM05D007072 ORTHO05D008841 7.8e-51 204.5 139 74.1
Carub.0001s0473 Capsella rubella HOM05D007072 ORTHO05D008841 1.7e-50 203.4 210 56.7
Thhalv10008840m.g Eutrema salsugineum HOM05D007072 ORTHO05D008841 2.3e-50 203.0 133 75.2
A10p04090 Brassica napus HOM05D007072 ORTHO05D008841 3.0e-50 202.6 206 58.7
ATR0733G024 Amborella trichopoda HOM05D007072 ORTHO05D008841 6.6e-50 201.4 181 60.8
AUR62033624 Chenopodium quinoa HOM05D007072 ORTHO05D008841 6.6e-50 201.4 139 73.4
unitig_32.g10817 Utricularia gibba HOM05D005563 ORTHO05D006667 8.6e-50 201.1 179 60.9
AL1G15220 Arabidopsis lyrata HOM05D007072 ORTHO05D008841 1.5e-49 200.3 128 78.1
AT1G05385 Arabidopsis thaliana HOM05D007072 ORTHO05D008841 1.9e-49 199.9 140 72.9
Rhsim04G0202400 Rhododendron simsii HOM05D007072 ORTHO05D008841 3.3e-49 199.1 155 68.4
SGA_v2.0_scaffold124G33503 Striga asiatica HOM05D007072 ORTHO05D008841 8.0e-48 194.5 199 58.8
CARHR004900 Cardamine hirsuta HOM05D007072 ORTHO05D008841 6.8e-47 191.4 132 72.0
Zm00001eb214960 Zea mays HOM05D007072 ORTHO05D008841 3.7e-45 185.7 158 63.9
Os03g0747700 Oryza sativa ssp. japonica HOM05D007072 ORTHO05D008841 1.9e-44 183.3 128 75.8
HPP92_001955 Vanilla planifolia HOM05D007072 ORTHO05D008841 2.7e-43 179.5 206 54.4
Actinidia27161 Actinidia chinensis HOM05D007072 ORTHO05D008841 3.5e-43 179.1 189 54.0
RcHm_v2.0_Chr4g0430981 Rosa chinensis HOM05D007072 ORTHO05D008841 1.6e-35 153.7 116 70.7
Pp3c8_18010 Physcomitrium patens HOM05D007072 ORTHO05D008841 4.6e-35 152.1 196 44.9
CDE10G0502 Ceratophyllum demersum HOM05D007072 ORTHO05D008841 7.3e-33 144.8 101 72.3
Mapoly0045s0091 Marchantia polymorpha HOM05D007072 ORTHO05D008841 3.6e-32 142.5 202 42.1
Nitab4.5_0001560g0030 Nicotiana tabacum HOM05D007072 ORTHO05D008841 2.4e-31 139.8 130 59.2
CBR_g41625 Chara braunii HOM05D007072 ORTHO05D008841 2.6e-30 136.3 142 50.0
SMO347G0486 Selaginella moellendorffii HOM05D007072 ORTHO05D008841 9.9e-30 134.4 128 50.8
SEGI_01006 Sequoiadendron giganteum HOM05D007072 ORTHO05D008841 3.3e-25 119.4 88 64.8
MBI05_g43294_MAGBIO Magnolia biondii HOM05D007072 ORTHO05D008841 2.2e-21 106.7 70 77.1
AagrBONN_evm.TU.Sc2ySwM_228.1232 Anthoceros agrestis HOM05D007072 ORTHO05D008841 4.5e-14 82.4 148 39.2
MCO04G154 Micromonas commoda HOM05D007072 ORTHO05D008841 7.4e-09 65.1 172 29.1
Cre02.g073850 Chlamydomonas reinhardtii HOM05D007072 ORTHO05D008841 5.3e-07 58.9 104 32.7
Rhsim06G0148500 Rhododendron simsii HOM05D006115 ORTHO05D007528 9.0e-07 58.2 98 31.6
DCAR_019192 Daucus carota HOM05D006115 ORTHO05D007528 1.2e-06 57.8 200 27.0
Duzib248G0317 Durio zibethinus HOM05D006115 ORTHO05D007528 3.4e-06 56.2 98 29.6
Aqoxy4G01223 Aquilegia oxysepala HOM05D006115 ORTHO05D007528 4.5e-06 55.8 98 28.6
Cfa014568 Carpinus fangiana HOM05D006115 ORTHO05D007528 7.6e-06 55.1 101 30.7
Haze_13113 Corylus avellana HOM05D006115 ORTHO05D007528 7.6e-06 55.1 98 29.6
Gorai.002G017600 Gossypium raimondii HOM05D006115 ORTHO05D007528 7.6e-06 55.1 98 28.6
MD09G1090500 Malus domestica HOM05D006115 ORTHO05D007528 9.9e-06 54.7 98 29.6
Prupe.3G235100 Prunus persica HOM05D006115 ORTHO05D007528 9.9e-06 54.7 98 29.6


User provided reference genes

Program Settings