Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G007300 Prunus persica HOM05D003616 ORTHO05D335316 2.0e-77 292.4 145 100.0
Prupe.1G362400 Prunus persica HOM05D003616 ORTHO05D004289 5.3e-22 108.2 90 63.3
MD08G1010100 Malus domestica HOM05D003616 ORTHO05D004289 1.3e-20 103.6 85 61.2
CSS0016648 Camellia sinensis var. sinensis HOM05D003616 ORTHO05D004289 4.9e-20 101.7 85 61.2
Cfa013983 Carpinus fangiana HOM05D003616 ORTHO05D004289 1.1e-19 100.5 90 58.9
TAR629G1297 Trochodendron aralioides HOM05D003616 ORTHO05D004289 1.9e-19 99.8 85 61.2
Hma1.2p1_0023F.1_g015660 Hydrangea macrophylla HOM05D003616 ORTHO05D004289 2.5e-19 99.4 95 54.7
Dinv39539 Davidia involucrata HOM05D003616 ORTHO05D004289 4.2e-19 98.6 90 58.9
MBI04_g06229_MAGBIO Magnolia biondii HOM05D003616 ORTHO05D004289 4.2e-19 98.6 85 60.0
Lalb_Chr08g0246201 Lupinus albus HOM05D003616 ORTHO05D004289 5.5e-19 98.2 85 58.8
Cc02_g37150 Coffea canephora HOM05D003616 ORTHO05D004289 7.1e-19 97.8 90 56.7
BcaC03g16480 Brassica carinata HOM05D003616 ORTHO05D004289 9.3e-19 97.4 85 57.6
A02p27080 Brassica napus HOM05D003616 ORTHO05D004289 9.3e-19 97.4 85 57.6
C02p42910 Brassica napus HOM05D003616 ORTHO05D004289 9.3e-19 97.4 85 57.6
BolC2t10330H Brassica oleracea HOM05D003616 ORTHO05D004289 9.3e-19 97.4 85 57.6
BraA02t07726Z Brassica rapa HOM05D003616 ORTHO05D004289 9.3e-19 97.4 85 57.6
CAN.G311.50 Capsicum annuum HOM05D003616 ORTHO05D004289 9.3e-19 97.4 90 57.8
CARHR284720 Cardamine hirsuta HOM05D003616 ORTHO05D004289 9.3e-19 97.4 85 56.5
Haze_22668 Corylus avellana HOM05D003616 ORTHO05D004289 1.2e-18 97.1 90 58.9
Thecc.08G048000 Theobroma cacao HOM05D003616 ORTHO05D004289 1.2e-18 97.1 90 55.6
Ciclev10008944m.g Citrus clementina HOM05D003616 ORTHO05D004289 1.6e-18 96.7 85 58.8
MELO3C011352.2 Cucumis melo HOM05D003616 ORTHO05D004289 1.6e-18 96.7 85 60.0
CsaV3_2G024290 Cucumis sativus L. HOM05D003616 ORTHO05D004289 1.6e-18 96.7 85 60.0
Thhalv10027850m.g Eutrema salsugineum HOM05D003616 ORTHO05D004289 2.1e-18 96.3 85 56.5
Lj4A21T62 Lonicera japonica HOM05D003616 ORTHO05D004289 2.1e-18 96.3 85 58.8
Rhsim06G0018600 Rhododendron simsii HOM05D003616 ORTHO05D004289 2.1e-18 96.3 90 55.6
THA.LOC104798670 Tarenaya hassleriana HOM05D003616 ORTHO05D004289 2.1e-18 96.3 90 54.4
Actinidia28138 Actinidia chinensis HOM05D003616 ORTHO05D004289 2.7e-18 95.9 85 58.8
Cfa019655 Carpinus fangiana HOM05D003616 ORTHO05D004289 2.7e-18 95.9 85 58.8
Haze_18855 Corylus avellana HOM05D003616 ORTHO05D004289 2.7e-18 95.9 85 58.8
Potri.012G046600 Populus trichocarpa HOM05D003616 ORTHO05D004289 2.7e-18 95.9 85 58.8
Sabra12G0032700 Salix brachista HOM05D003616 ORTHO05D004289 2.7e-18 95.9 85 58.8
Atru.chr13.252 Acer truncatum HOM05D003616 ORTHO05D004289 3.5e-18 95.5 90 54.4
QL02p012220 Quercus lobata HOM05D003616 ORTHO05D004289 3.5e-18 95.5 85 58.8
Solyc04g081740.3 Solanum lycopersicum HOM05D003616 ORTHO05D004289 3.5e-18 95.5 90 56.7
Sopen04g035370 Solanum pennellii HOM05D003616 ORTHO05D004289 3.5e-18 95.5 90 56.7
Aa31LG9G12310 Aethionema arabicum HOM05D003616 ORTHO05D004289 4.6e-18 95.1 85 55.3
AL8G19670 Arabidopsis lyrata HOM05D003616 ORTHO05D004289 4.6e-18 95.1 85 55.3
Carub.0008s0714 Capsella rubella HOM05D003616 ORTHO05D004289 4.6e-18 95.1 85 55.3
Cc10_g01410 Coffea canephora HOM05D003616 ORTHO05D004289 4.6e-18 95.1 85 57.6
COL.COLO4_26116 Corchorus olitorius HOM05D003616 ORTHO05D004289 4.6e-18 95.1 95 52.6
Lalb_Chr22g0353551 Lupinus albus HOM05D003616 ORTHO05D004289 4.6e-18 95.1 85 58.8
Sp7g08670 Schrenkiella parvula HOM05D003616 ORTHO05D004289 4.6e-18 95.1 85 56.5
BcaB04g19405 Brassica carinata HOM05D003616 ORTHO05D004289 6.0e-18 94.7 85 55.3
CiPaw.07G146600 Carya illinoinensis HOM05D003616 ORTHO05D004289 6.0e-18 94.7 85 58.8
Eucgr.H00953 Eucalyptus grandis HOM05D003616 ORTHO05D004289 6.0e-18 94.7 85 56.5
Eucgr.H00955 Eucalyptus grandis HOM05D003616 ORTHO05D004289 6.0e-18 94.7 85 56.5
TAR625G0790 Trochodendron aralioides HOM05D003616 ORTHO05D004289 6.0e-18 94.7 85 58.8
GSVIVG01008442001 Vitis vinifera HOM05D003616 ORTHO05D004289 6.0e-18 94.7 85 56.5
Actinidia15440 Actinidia chinensis HOM05D003616 ORTHO05D004289 7.9e-18 94.4 85 58.8
HanXRQChr14g0455291 Helianthus annuus HOM05D003616 ORTHO05D004289 7.9e-18 94.4 90 54.4
TPR.G8619 Trifolium pratense HOM05D003616 ORTHO05D004289 7.9e-18 94.4 85 57.6
Atru.chr9.1732 Acer truncatum HOM05D003616 ORTHO05D004289 1.0e-17 94.0 90 54.4
AT5G42150 Arabidopsis thaliana HOM05D003616 ORTHO05D004289 1.0e-17 94.0 85 54.1
arahy.Tifrunner.gnm1.ann1.0SP0C0 Arachis hypogaea HOM05D003616 ORTHO05D004289 1.0e-17 94.0 85 57.6
arahy.Tifrunner.gnm1.ann1.YQ88M5 Arachis hypogaea HOM05D003616 ORTHO05D004289 1.0e-17 94.0 85 57.6
Duzib093G0398 Durio zibethinus HOM05D003616 ORTHO05D004289 1.0e-17 94.0 90 54.4
MD14G1236600 Malus domestica HOM05D003616 ORTHO05D004289 1.0e-17 94.0 85 57.6
Medtr6g069420 Medicago truncatula HOM05D003616 ORTHO05D004289 1.0e-17 94.0 85 57.6
SGA_v2.0_scaffold92G28201 Striga asiatica HOM05D003616 ORTHO05D004289 1.0e-17 94.0 90 54.4
TWI60G1662 Tripterygium wilfordii HOM05D003616 ORTHO05D004289 1.0e-17 94.0 85 55.3
Ah.11g040000 Amaranthus hybridus HOM05D003616 ORTHO05D004289 1.3e-17 93.6 85 55.3
CiPaw.15G143500 Carya illinoinensis HOM05D003616 ORTHO05D004289 1.3e-17 93.6 85 57.6
Duzib084G0113 Durio zibethinus HOM05D003616 ORTHO05D004289 1.3e-17 93.6 85 57.6
Migut.C00863 Erythranthe guttata HOM05D003616 ORTHO05D004289 1.3e-17 93.6 90 54.4
Gohir.D05G187700 Gossypium hirsutum HOM05D003616 ORTHO05D004289 1.3e-17 93.6 86 58.1
Manes.14G171500 Manihot esculenta HOM05D003616 ORTHO05D004289 1.3e-17 93.6 85 57.6
Nn3g18380 Nelumbo nucifera HOM05D003616 ORTHO05D004289 1.3e-17 93.6 106 48.1
Oeu007366.1 Olea europaea HOM05D003616 ORTHO05D004289 1.3e-17 93.6 90 54.4
Potri.015G038300 Populus trichocarpa HOM05D003616 ORTHO05D004289 1.3e-17 93.6 85 57.6
Thecc.03G055800 Theobroma cacao HOM05D003616 ORTHO05D004289 1.3e-17 93.6 85 57.6
CANSAT80G0515 Cannabis sativa HOM05D003616 ORTHO05D004289 1.8e-17 93.2 85 56.5
Ca_25333_v3 Cicer arietinum L. HOM05D003616 ORTHO05D004289 1.8e-17 93.2 85 56.5
Dinv17550 Davidia involucrata HOM05D003616 ORTHO05D004289 1.8e-17 93.2 85 57.6
Gohir.A05G184900 Gossypium hirsutum HOM05D003616 ORTHO05D004289 1.8e-17 93.2 86 58.1
SGA_v2.0_scaffold19G08556 Striga asiatica HOM05D003616 ORTHO05D004289 1.8e-17 93.2 90 54.4
TWI15G0798 Tripterygium wilfordii HOM05D003616 ORTHO05D004289 1.8e-17 93.2 85 55.3
Manes.18G011100 Manihot esculenta HOM05D003616 ORTHO05D004289 2.3e-17 92.8 85 55.3
Sed0022788 Sechium edule HOM05D003616 ORTHO05D004289 2.3e-17 92.8 85 57.6
Aqoxy2G03601 Aquilegia oxysepala HOM05D003616 ORTHO05D004289 3.0e-17 92.4 85 56.5
Cpa.g.sc3.395 Carica papaya HOM05D003616 ORTHO05D004289 3.0e-17 92.4 85 56.5
Ca_15480_v3 Cicer arietinum L. HOM05D003616 ORTHO05D004289 3.0e-17 92.4 85 56.5
FAN04G2471 Fragaria x ananassa HOM05D003616 ORTHO05D004289 3.0e-17 92.4 85 56.5
HanXRQChr06g0183781 Helianthus annuus HOM05D003616 ORTHO05D004289 3.0e-17 92.4 85 54.1
QL10p029638 Quercus lobata HOM05D003616 ORTHO05D004289 3.0e-17 92.4 85 56.5
RcHm_v2.0_Chr7g0178351 Rosa chinensis HOM05D003616 ORTHO05D004289 3.0e-17 92.4 85 56.5
arahy.Tifrunner.gnm1.ann1.MX1HG7 Arachis hypogaea HOM05D003616 ORTHO05D004289 3.9e-17 92.0 85 56.5
arahy.Tifrunner.gnm1.ann1.TXJ4LD Arachis hypogaea HOM05D003616 ORTHO05D004289 3.9e-17 92.0 85 56.5
Ciclev10001861m.g Citrus clementina HOM05D003616 ORTHO05D004289 3.9e-17 92.0 85 54.1
FvH4_2g38150 Fragaria vesca HOM05D003616 ORTHO05D004289 3.9e-17 92.0 85 56.5
FAN27G0470 Fragaria x ananassa HOM05D003616 ORTHO05D004289 3.9e-17 92.0 85 56.5
Gohir.A03G092600 Gossypium hirsutum HOM05D003616 ORTHO05D004289 3.9e-17 92.0 85 56.5
Gohir.D02G121200 Gossypium hirsutum HOM05D003616 ORTHO05D004289 3.9e-17 92.0 85 56.5
Gorai.005G133000 Gossypium raimondii HOM05D003616 ORTHO05D004289 3.9e-17 92.0 85 56.5
Nn4g24400 Nelumbo nucifera HOM05D003616 ORTHO05D004289 3.9e-17 92.0 85 56.5
Phvul.009G009900 Phaseolus vulgaris HOM05D003616 ORTHO05D004289 3.9e-17 92.0 85 56.5
Psat1g033600 Pisum sativum HOM05D003616 ORTHO05D004289 3.9e-17 92.0 85 55.3
RcHm_v2.0_Chr6g0303331 Rosa chinensis HOM05D003616 ORTHO05D004289 3.9e-17 92.0 85 56.5
VMungo1309G2159 Vigna mungo HOM05D003616 ORTHO05D004289 3.9e-17 92.0 85 56.5
HanXRQChr07g0204451 Helianthus annuus HOM05D003616 ORTHO05D004289 5.1e-17 91.7 90 55.6
Nitab4.5_0006505g0020 Nicotiana tabacum HOM05D003616 ORTHO05D004289 5.1e-17 91.7 90 54.4
Phvul.004G150900 Phaseolus vulgaris HOM05D003616 ORTHO05D004289 5.1e-17 91.7 85 55.3
Sed0005025 Sechium edule HOM05D003616 ORTHO05D004289 5.1e-17 91.7 85 55.3
MSTRG.24236 Avicennia marina HOM05D003616 ORTHO05D004289 6.7e-17 91.3 90 53.3
CSS0013276 Camellia sinensis var. sinensis HOM05D003616 ORTHO05D004289 6.7e-17 91.3 85 55.3
ClCG06G014280 Citrullus lanatus HOM05D003616 ORTHO05D004289 6.7e-17 91.3 85 56.5
FAN08G3458 Fragaria x ananassa HOM05D003616 ORTHO05D004289 6.7e-17 91.3 85 55.3
Glyma.07G102200 Glycine max HOM05D003616 ORTHO05D004289 6.7e-17 91.3 85 55.3
Glyma.09G177000 Glycine max HOM05D003616 ORTHO05D004289 6.7e-17 91.3 85 55.3
Gorai.009G193000 Gossypium raimondii HOM05D003616 ORTHO05D004289 6.7e-17 91.3 86 57.0
SGA_v2.0_scaffold25G11209 Striga asiatica HOM05D003616 ORTHO05D004289 6.7e-17 91.3 90 53.3
MELO3C017361.2 Cucumis melo HOM05D003616 ORTHO05D004289 8.7e-17 90.9 85 56.5
CsaV3_1G004390 Cucumis sativus L. HOM05D003616 ORTHO05D004289 8.7e-17 90.9 85 56.5
Lj2g0015525 Lotus japonicus HOM05D003616 ORTHO05D004289 8.7e-17 90.9 85 55.3
FvH4_5g17390 Fragaria vesca HOM05D003616 ORTHO05D004289 1.1e-16 90.5 85 55.3
FAN18G4023 Fragaria x ananassa HOM05D003616 ORTHO05D004289 1.1e-16 90.5 85 55.3
Lsat_1_v5_gn_2_9140 Lactuca sativa HOM05D003616 ORTHO05D004289 1.1e-16 90.5 90 50.0
Lalb_Chr14g0370571 Lupinus albus HOM05D003616 ORTHO05D004289 1.1e-16 90.5 85 55.3
Sabra05G0187700 Salix brachista HOM05D003616 ORTHO05D004289 1.1e-16 90.5 79 57.0
Sed0021008 Sechium edule HOM05D003616 ORTHO05D004289 1.1e-16 90.5 85 55.3
Sc02g0008690 Simmondsia chinensis HOM05D003616 ORTHO05D004289 1.1e-16 90.5 85 54.1
vmacro07569 Vaccinium macrocarpon HOM05D003616 ORTHO05D004289 1.1e-16 90.5 74 62.2
GSVIVG01009954001 Vitis vinifera HOM05D003616 ORTHO05D004289 1.1e-16 90.5 90 55.6
Eucgr.B01000 Eucalyptus grandis HOM05D003616 ORTHO05D004289 1.5e-16 90.1 85 54.1
PSO541G0876 Papaver somniferum HOM05D003616 ORTHO05D004289 1.5e-16 90.1 85 55.3
PSO675G9362 Papaver somniferum HOM05D003616 ORTHO05D004289 1.5e-16 90.1 85 55.3
Prupe.5G233700 Prunus persica HOM05D003616 ORTHO05D004289 1.5e-16 90.1 85 54.1
Hund05170 Selenicereus undatus HOM05D003616 ORTHO05D004289 1.5e-16 90.1 90 53.3
CANSAT25G0701 Cannabis sativa HOM05D003616 ORTHO05D004289 1.9e-16 89.7 85 55.3
FAN15G3669 Fragaria x ananassa HOM05D003616 ORTHO05D004289 1.9e-16 89.7 85 55.3
Glyma.04G023200 Glycine max HOM05D003616 ORTHO05D004289 1.9e-16 89.7 85 55.3
Lsat_1_v5_gn_2_108180 Lactuca sativa HOM05D003616 ORTHO05D004289 1.9e-16 89.7 90 52.2
Psat5g012880 Pisum sativum HOM05D003616 ORTHO05D004289 1.9e-16 89.7 85 55.3
Potri.005G242500 Populus trichocarpa HOM05D003616 ORTHO05D004289 1.9e-16 89.7 90 51.1
SalBow8G4338 Salvia bowleyana HOM05D003616 ORTHO05D004289 1.9e-16 89.7 85 51.8
Lj5A158G70 Lonicera japonica HOM05D003616 ORTHO05D004289 2.5e-16 89.4 74 62.2
vmacro17781 Vaccinium macrocarpon HOM05D003616 ORTHO05D004289 2.5e-16 89.4 83 56.6
CDE05G1955 Ceratophyllum demersum HOM05D003616 ORTHO05D004289 3.3e-16 89.0 85 54.1
Lj1g0017366 Lotus japonicus HOM05D003616 ORTHO05D004289 3.3e-16 89.0 85 52.9
Mapoly0126s0030 Marchantia polymorpha HOM05D003616 ORTHO05D004289 3.3e-16 89.0 85 54.1
Oeu026133.1 Olea europaea HOM05D003616 ORTHO05D004289 3.3e-16 89.0 90 51.1
VMungo0464G1067 Vigna mungo HOM05D003616 ORTHO05D004289 3.3e-16 89.0 85 52.9
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 4.3e-16 88.6 85 54.1
Medtr3g114070 Medicago truncatula HOM05D003616 ORTHO05D004289 4.3e-16 88.6 85 54.1
TPR.G243 Trifolium pratense HOM05D003616 ORTHO05D004289 4.3e-16 88.6 74 60.8
Migut.N03175 Erythranthe guttata HOM05D003616 ORTHO05D004289 5.7e-16 88.2 85 54.1
TWI12G0315 Tripterygium wilfordii HOM05D003616 ORTHO05D004289 5.7e-16 88.2 85 51.8
PGR083G0078 Punica granatum HOM05D003616 ORTHO05D004289 7.4e-16 87.8 85 54.1
PGR031G0359 Punica granatum HOM05D003616 ORTHO05D004289 9.7e-16 87.4 85 51.8
SEGI_35058 Sequoiadendron giganteum HOM05D003616 ORTHO05D004289 9.7e-16 87.4 90 50.0
unitig_748.g7720 Utricularia gibba HOM05D003616 ORTHO05D004289 9.7e-16 87.4 126 40.5
ECA238G4543 Erigeron canadensis HOM05D003616 ORTHO05D004289 1.3e-15 87.0 85 52.9
HPP92_015015 Vanilla planifolia HOM05D003616 ORTHO05D004289 1.3e-15 87.0 90 51.1
AUR62040567 Chenopodium quinoa HOM05D003616 ORTHO05D004289 1.6e-15 86.7 85 49.4
PSO700G0251 Papaver somniferum HOM05D003616 ORTHO05D004289 1.6e-15 86.7 142 39.4
Lsat_1_v5_gn_8_25101 Lactuca sativa HOM05D003616 ORTHO05D004289 2.2e-15 86.3 85 52.9
Peaxi162Scf00860g00047 Petunia axillaris HOM05D003616 ORTHO05D004289 2.8e-15 85.9 85 50.6
ATR0626G339 Amborella trichopoda HOM05D003616 ORTHO05D004289 3.7e-15 85.5 139 38.1
DCAR_003546 Daucus carota HOM05D003616 ORTHO05D004289 3.7e-15 85.5 85 51.8
ATR0180G023 Amborella trichopoda HOM05D003616 ORTHO05D004289 8.2e-15 84.3 64 64.1
AUR62013931 Chenopodium quinoa HOM05D003616 ORTHO05D004289 8.2e-15 84.3 85 48.2
SMO140G0111 Selaginella moellendorffii HOM05D003616 ORTHO05D004289 1.4e-14 83.6 84 53.6
CBR_g28548 Chara braunii HOM05D003616 ORTHO05D004289 1.8e-14 83.2 85 47.1
EL10Ac1g02157 Beta vulgaris HOM05D003616 ORTHO05D004289 4.1e-14 82.0 85 47.1
PSO170G1220 Papaver somniferum HOM05D003616 ORTHO05D004289 4.1e-14 82.0 143 37.8
ClCG08G014130 Citrullus lanatus HOM05D003616 ORTHO05D004289 5.3e-14 81.6 58 69.0
Os04g0244400 Oryza sativa ssp. japonica HOM05D003616 ORTHO05D004289 1.5e-13 80.1 117 39.3
Oeu051168.1 Olea europaea HOM05D003616 ORTHO05D004289 2.0e-13 79.7 62 64.5
Pp3c22_13980 Physcomitrium patens HOM05D003616 ORTHO05D004289 2.0e-13 79.7 79 51.9
Sabra15G0037200 Salix brachista HOM05D003616 ORTHO05D004289 1.0e-12 77.4 68 58.8
VMungo1309G0063 Vigna mungo HOM05D003616 ORTHO05D004289 1.0e-12 77.4 71 56.3
Pp3c19_15500 Physcomitrium patens HOM05D003616 ORTHO05D004289 2.2e-12 76.3 79 48.1
Lj9A420T36 Lonicera japonica HOM05D003616 ORTHO05D004289 3.8e-12 75.5 82 50.0
VMungo1309G1258 Vigna mungo HOM05D003616 ORTHO05D004289 6.5e-12 74.7 71 54.9
MD15G1010000 Malus domestica HOM05D003616 ORTHO05D004289 8.5e-12 74.3 99 42.4
Zm00001eb086680 Zea mays HOM05D003616 ORTHO05D004289 7.2e-11 71.2 100 41.0
PRCOL_00004876 Prasinoderma coloniale HOM05D003616 ORTHO05D004289 3.1e-06 55.8 87 41.4


User provided reference genes

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