Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G004300 Prunus persica HOM05D006368 ORTHO05D006739 1.3e-80 303.1 165 100.0
Prupe.1G016300 Prunus persica HOM05D006368 ORTHO05D006739 7.1e-39 164.5 125 64.0
Prupe.1G019300 Prunus persica HOM05D006368 ORTHO05D006739 9.6e-28 127.5 127 52.0
FAN16G0274 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.0e-21 107.5 157 40.1
FAN02G0212 Fragaria x ananassa HOM05D006368 ORTHO05D006739 5.1e-21 105.1 157 39.5
FvH4_3g37301 Fragaria vesca HOM05D006368 ORTHO05D006739 6.7e-21 104.8 160 39.4
RcHm_v2.0_Chr4g0430971 Rosa chinensis HOM05D006368 ORTHO05D006739 6.7e-21 104.8 157 38.9
RcHm_v2.0_Chr5g0067081 Rosa chinensis HOM05D006368 ORTHO05D006739 3.3e-20 102.4 157 39.5
FvH4_6g37591 Fragaria vesca HOM05D006368 ORTHO05D006739 5.6e-20 101.7 138 41.3
FvH4_6g37552 Fragaria vesca HOM05D006368 ORTHO05D006739 9.6e-20 100.9 138 41.3
FAN14G2460 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.6e-19 100.1 113 47.8
Prupe.3G239100 Prunus persica HOM05D006368 ORTHO05D006739 1.6e-19 100.1 183 37.2
FvH4_6g49640 Fragaria vesca HOM05D006368 ORTHO05D006739 4.8e-19 98.6 113 46.9
FAN14G0979 Fragaria x ananassa HOM05D006368 ORTHO05D006739 6.2e-19 98.2 138 39.1
MD03G1085600 Malus domestica HOM05D006368 ORTHO05D006739 1.8e-18 96.7 143 40.6
RcHm_v2.0_Chr2g0153831 Rosa chinensis HOM05D006368 ORTHO05D006739 4.0e-18 95.5 134 43.3
FvH4_6g47001 Fragaria vesca HOM05D006368 ORTHO05D006739 1.2e-17 94.0 134 40.3
FAN14G2751 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.2e-17 94.0 134 40.3
FvH4_6g47002 Fragaria vesca HOM05D006368 ORTHO05D006739 4.5e-17 92.0 127 40.9
FAN02G0373 Fragaria x ananassa HOM05D006368 ORTHO05D006739 4.5e-17 92.0 127 40.9
FvH4_3g37281 Fragaria vesca HOM05D006368 ORTHO05D006739 5.8e-17 91.7 146 37.0
FvH4_6g36920 Fragaria vesca HOM05D006368 ORTHO05D006739 5.8e-17 91.7 135 43.0
FAN14G0640 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.3e-16 90.5 127 40.9
FAN09G4055 Fragaria x ananassa HOM05D006368 ORTHO05D006739 2.2e-16 89.7 139 38.8
FAN05G3822 Fragaria x ananassa HOM05D006368 ORTHO05D006739 2.9e-16 89.4 139 38.8
RcHm_v2.0_Chr2g0166171 Rosa chinensis HOM05D006368 ORTHO05D006739 6.4e-16 88.2 140 40.0
FAN09G0606 Fragaria x ananassa HOM05D006368 ORTHO05D006739 8.4e-16 87.8 128 41.4
FAN14G0584 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.4e-15 87.0 136 41.2
FAN14G2798 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.4e-15 87.0 136 41.2
FAN10G0746 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.9e-15 86.7 145 37.2
FAN14G3911 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.9e-15 86.7 145 37.2
RcHm_v2.0_Chr2g0166201 Rosa chinensis HOM05D006368 ORTHO05D006739 1.9e-15 86.7 156 36.5
FAN02G2469 Fragaria x ananassa HOM05D006368 ORTHO05D006739 3.2e-15 85.9 133 39.1
MD09G1027500 Malus domestica HOM05D006368 ORTHO05D006739 9.3e-15 84.3 159 34.0
FAN02G3903 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.2e-14 84.0 134 37.3
FAN02G2985 Fragaria x ananassa HOM05D002060 ORTHO05D002098 2.1e-14 83.2 146 37.7
FAN14G3548 Fragaria x ananassa HOM05D006368 ORTHO05D006739 6.0e-14 81.6 121 44.6
FAN09G4111 Fragaria x ananassa HOM05D006368 ORTHO05D006739 7.9e-14 81.3 159 34.0
FAN05G0916 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.3e-13 80.5 131 41.2
FvH4_2g13532 Fragaria vesca HOM05D006368 ORTHO05D006739 2.3e-13 79.7 60 61.7
FAN12G2895 Fragaria x ananassa HOM05D006368 ORTHO05D006739 6.7e-13 78.2 145 36.6
FvH4_4g23711 Fragaria vesca HOM05D006368 ORTHO05D006739 1.1e-12 77.4 145 36.6
TAR626G0819 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.5e-12 77.0 130 38.5
FvH4_6g47140 Fragaria vesca HOM05D006368 ORTHO05D006739 1.9e-12 76.6 152 36.8
FAN14G5568 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.9e-12 76.6 152 36.8
FvH4_6g47170 Fragaria vesca HOM05D006368 ORTHO05D006739 2.5e-12 76.3 141 35.5
FvH4_6g22212 Fragaria vesca HOM05D010931 ORTHO05D016562 3.3e-12 75.9 138 29.7
FvH4_6g47161 Fragaria vesca HOM05D006368 ORTHO05D035370 5.6e-12 75.1 56 58.9
FAN14G2825 Fragaria x ananassa HOM05D006368 ORTHO05D006739 5.6e-12 75.1 56 58.9
FAN02G1443 Fragaria x ananassa HOM05D006368 ORTHO05D006739 9.6e-12 74.3 58 55.2
FAN05G3646 Fragaria x ananassa HOM05D006368 ORTHO05D006739 9.6e-12 74.3 58 55.2
RcHm_v2.0_Chr3g0476221 Rosa chinensis HOM05D024214 ORTHO05D016562 9.6e-12 74.3 147 29.3
Medtr7g069870 Medicago truncatula HOM05D010147 ORTHO05D006739 2.1e-11 73.2 128 32.0
Ca_07681_v3 Cicer arietinum L. HOM05D010147 ORTHO05D006739 2.8e-11 72.8 130 30.8
FvH4_6g22332 Fragaria vesca HOM05D010931 ORTHO05D016562 3.7e-11 72.4 137 30.7
FvH4_6g16971 Fragaria vesca HOM05D011252 ORTHO05D029353 6.2e-11 71.6 141 27.0
FAN05G5450 Fragaria x ananassa HOM05D006368 ORTHO05D035370 8.1e-11 71.2 54 57.4
FAN14G0447 Fragaria x ananassa HOM05D011252 ORTHO05D029353 8.1e-11 71.2 139 26.6
FAN09G1584 Fragaria x ananassa HOM05D006368 ORTHO05D035370 1.1e-10 70.9 56 55.4
TAR525G0003 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.1e-10 70.9 137 38.7
TAR626G0415 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.1e-10 70.9 137 38.7
FvH4_6g16960 Fragaria vesca HOM05D011252 ORTHO05D029353 1.4e-10 70.5 139 26.6
Lj2g0009806 Lotus japonicus HOM05D006368 ORTHO05D006739 1.8e-10 70.1 138 29.0
TAR636G0219 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.4e-10 69.7 128 36.7
Lj1g0005351 Lotus japonicus HOM05D010147 ORTHO05D006739 3.1e-10 69.3 151 25.2
FAN05G1932 Fragaria x ananassa HOM05D006368 ORTHO05D006739 4.0e-10 68.9 156 31.4
FvH4_6g49120 Fragaria vesca HOM05D006368 ORTHO05D006739 5.3e-10 68.6 134 36.6
FvH4_6g49280 Fragaria vesca HOM05D006368 ORTHO05D006739 6.9e-10 68.2 156 31.4
FAN09G3687 Fragaria x ananassa HOM05D006368 ORTHO05D006739 6.9e-10 68.2 138 35.5
FAN09G3725 Fragaria x ananassa HOM05D006368 ORTHO05D006739 6.9e-10 68.2 138 35.5
FAN25G0093 Fragaria x ananassa HOM05D007346 ORTHO05D009044 9.0e-10 67.8 131 35.9
FvH4_6g49281 Fragaria vesca HOM05D006368 ORTHO05D006739 1.2e-09 67.4 138 35.5
FAN14G0813 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.2e-09 67.4 138 35.5
FAN22G0881 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.2e-09 67.4 138 35.5
FvH4_6g21331 Fragaria vesca HOM05D024214 ORTHO05D016562 2.0e-09 66.6 162 28.4
FAN05G0250 Fragaria x ananassa HOM05D006368 ORTHO05D006739 2.0e-09 66.6 58 53.4
FAN21G1548 Fragaria x ananassa HOM05D007346 ORTHO05D009044 2.0e-09 66.6 131 35.1
Lalb_Chr19g0124301 Lupinus albus HOM05D010147 ORTHO05D006739 2.0e-09 66.6 134 30.6
FAN14G1492 Fragaria x ananassa HOM05D006368 ORTHO05D006739 2.6e-09 66.2 150 34.0
FAN02G0730 Fragaria x ananassa HOM05D011252 ORTHO05D013603 3.4e-09 65.9 141 25.5
TAR636G2580 Trochodendron aralioides HOM05D000151 ORTHO05D000074 3.4e-09 65.9 131 31.3
TAR636G0813 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.5e-09 65.5 133 34.6
FAN02G2364 Fragaria x ananassa HOM05D011252 ORTHO05D029353 5.8e-09 65.1 141 25.5
MD03G1012300 Malus domestica HOM05D007346 ORTHO05D009044 5.8e-09 65.1 154 30.5
Nn7g38181 Nelumbo nucifera HOM05D001286 ORTHO05D000440 5.8e-09 65.1 129 31.0
RcHm_v2.0_Chr4g0430571 Rosa chinensis HOM05D014495 ORTHO05D014615 5.8e-09 65.1 130 30.8
Thecc.08G054100 Theobroma cacao HOM05D000151 ORTHO05D000074 5.8e-09 65.1 130 33.1
FvH4_6g47130 Fragaria vesca HOM05D006368 ORTHO05D006739 7.6e-09 64.7 150 34.0
FAN14G1402 Fragaria x ananassa HOM05D006368 ORTHO05D006739 7.6e-09 64.7 63 50.8
FAN06G1165 Fragaria x ananassa HOM05D007346 ORTHO05D009044 1.0e-08 64.3 159 32.1
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.3e-08 63.9 58 55.2
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.3e-08 63.9 58 55.2
RcHm_v2.0_Chr7g0197821 Rosa chinensis HOM05D006368 ORTHO05D006739 1.3e-08 63.9 119 34.5
COL.COLO4_26063 Corchorus olitorius HOM05D000151 ORTHO05D000074 1.7e-08 63.5 130 33.8
Duzib116G0495 Durio zibethinus HOM05D000151 ORTHO05D000074 2.2e-08 63.2 130 33.8
Manes.18G008400 Manihot esculenta HOM05D000151 ORTHO05D000074 2.2e-08 63.2 129 30.2
Ca_07672_v3 Cicer arietinum L. HOM05D010147 ORTHO05D006739 2.9e-08 62.8 133 27.1
Ca_07673_v3 Cicer arietinum L. HOM05D010147 ORTHO05D006739 2.9e-08 62.8 133 29.3
FvH4_7g08620 Fragaria vesca HOM05D007346 ORTHO05D009044 2.9e-08 62.8 125 36.0
Lalb_Chr19g0133241 Lupinus albus HOM05D006368 ORTHO05D006739 2.9e-08 62.8 153 24.2
Medtr7g069800 Medicago truncatula HOM05D010147 ORTHO05D006739 2.9e-08 62.8 128 27.3
Prupe.3G291200 Prunus persica HOM05D006368 ORTHO05D006739 2.9e-08 62.8 58 50.0
Cfa014025 Carpinus fangiana HOM05D000151 ORTHO05D000074 4.9e-08 62.0 129 32.6
FAN17G2014 Fragaria x ananassa HOM05D006368 ORTHO05D006739 4.9e-08 62.0 58 55.2
FAN05G4829 Fragaria x ananassa HOM05D006368 ORTHO05D006739 6.5e-08 61.6 137 36.5
FAN14G3691 Fragaria x ananassa HOM05D006368 ORTHO05D006739 6.5e-08 61.6 132 34.1
FAN20G1383 Fragaria x ananassa HOM05D000151 ORTHO05D000074 8.4e-08 61.2 129 32.6
Sabra02G0011500 Salix brachista HOM05D000151 ORTHO05D000074 8.4e-08 61.2 129 27.9
Medtr7g069820 Medicago truncatula HOM05D010147 ORTHO05D006739 1.1e-07 60.8 132 27.3
Ca_07680_v3 Cicer arietinum L. HOM05D010147 ORTHO05D006739 1.4e-07 60.5 129 29.5
FAN02G0769 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.4e-07 60.5 115 37.4
FAN25G0324 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.4e-07 60.5 149 33.6
TAR628G1200 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.4e-07 60.5 130 30.0
FvH4_2g04880 Fragaria vesca HOM05D007346 ORTHO05D009044 1.9e-07 60.1 132 31.8
FAN24G1006 Fragaria x ananassa HOM05D007346 ORTHO05D009044 1.9e-07 60.1 132 31.8
MBI11_g05443_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 3.2e-07 59.3 129 29.5
Psat0s4081g0040 Pisum sativum HOM05D000151 ORTHO05D000074 3.2e-07 59.3 129 32.6
TWI56G0068 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 3.2e-07 59.3 128 32.8
FAN14G3177 Fragaria x ananassa HOM05D011252 ORTHO05D002975 5.5e-07 58.5 136 24.3
MBI19_g33448_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 5.5e-07 58.5 134 29.1
MD15G1005500 Malus domestica HOM05D000151 ORTHO05D000074 5.5e-07 58.5 129 31.8
TPR.G38190 Trifolium pratense HOM05D000151 ORTHO05D000074 5.5e-07 58.5 130 33.1
FAN05G2214 Fragaria x ananassa HOM05D011252 ORTHO05D016562 7.1e-07 58.2 131 29.0
Lj2g0002702 Lotus japonicus HOM05D006368 ORTHO05D006739 7.1e-07 58.2 140 26.4
RcHm_v2.0_Chr6g0303821 Rosa chinensis HOM05D000151 ORTHO05D000074 7.1e-07 58.2 129 31.0
MELO3C017000.2 Cucumis melo HOM05D000151 ORTHO05D000074 9.3e-07 57.8 129 34.1
RcHm_v2.0_Chr6g0254551 Rosa chinensis HOM05D007346 ORTHO05D009044 9.3e-07 57.8 126 35.7
TAR636G1638 Trochodendron aralioides HOM05D000151 ORTHO05D000074 9.3e-07 57.8 141 27.7
FvH4_2g03062 Fragaria vesca HOM05D007346 ORTHO05D009044 1.2e-06 57.4 125 31.2
FvH4_4g02090 Fragaria vesca HOM05D007346 ORTHO05D009044 1.2e-06 57.4 127 30.7
MD08G1006100 Malus domestica HOM05D000151 ORTHO05D000074 1.2e-06 57.4 129 31.0
TWI38G2055 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.6e-06 57.0 132 28.8
Dinv43794 Davidia involucrata HOM05D000151 ORTHO05D000074 2.1e-06 56.6 136 30.9
Dinv43798 Davidia involucrata HOM05D000713 ORTHO05D000547 2.1e-06 56.6 136 30.9
FAN02G0044 Fragaria x ananassa HOM05D006368 ORTHO05D006739 2.1e-06 56.6 139 35.3
Glyma.04G019900 Glycine max HOM05D000151 ORTHO05D000074 2.1e-06 56.6 130 32.3
FAN24G2319 Fragaria x ananassa HOM05D007346 ORTHO05D009044 2.7e-06 56.2 125 31.2
Zm00001eb272730 Zea mays HOM05D000151 ORTHO05D000074 3.5e-06 55.8 127 27.6
AUR62013850 Chenopodium quinoa HOM05D000151 ORTHO05D000074 4.6e-06 55.5 135 34.1
FvH4_6g47190 Fragaria vesca HOM05D006368 ORTHO05D006739 4.6e-06 55.5 39 56.4


User provided reference genes

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