Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 6.1e-206 721.1 515 100.0
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 2.2e-126 456.8 454 75.6
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 1.0e-123 448.0 453 74.6
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.0e-123 448.0 453 74.6
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 2.2e-123 446.8 453 74.2
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 7.9e-121 438.3 473 75.7
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 3.4e-116 422.9 463 71.7
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 5.9e-116 422.2 459 73.4
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.3e-110 404.4 454 70.9
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 3.6e-105 386.3 462 66.7
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 1.1e-101 374.8 464 64.9
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 4.5e-100 369.4 454 63.7
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 3.8e-99 366.3 464 64.7
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 4.7e-97 359.4 463 65.7
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 2.4e-93 347.1 453 65.8
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 7.0e-93 345.5 453 62.0
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 1.1e-90 338.2 463 60.9
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 2.5e-90 337.0 466 62.2
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 2.3e-88 330.5 458 61.4
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 8.8e-88 328.6 454 62.6
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 1.5e-87 327.8 368 67.7
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 3.4e-87 326.6 455 64.2
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 4.4e-87 326.2 431 61.9
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 6.3e-86 322.4 369 62.9
CiPaw.02G076500 Carya illinoinensis HOM05D002444 ORTHO05D009235 2.4e-85 320.5 259 68.0
Dinv44313 Davidia involucrata HOM05D002444 ORTHO05D009235 2.7e-84 317.0 261 66.7
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 1.9e-82 310.8 439 59.2
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 2.1e-81 307.4 431 62.4
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 4.7e-81 306.2 439 57.6
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 1.0e-80 305.1 457 59.7
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 3.0e-80 303.5 460 61.1
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 3.0e-80 303.5 388 63.1
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 2.6e-79 300.4 368 64.1
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 2.6e-79 300.4 428 64.3
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 2.2e-78 297.4 454 59.5
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 3.7e-78 296.6 408 46.6
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 6.3e-78 295.8 410 46.8
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 6.3e-78 295.8 410 46.8
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 8.3e-78 295.4 408 46.3
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 5.4e-77 292.7 259 63.7
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 1.2e-76 291.6 388 60.6
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 5.0e-75 286.2 411 61.6
TAR374G0260 Trochodendron aralioides HOM05D002444 ORTHO05D009235 6.6e-75 285.8 271 59.8
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 1.5e-74 284.6 446 59.9
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 1.5e-74 284.6 422 58.1
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 4.3e-74 283.1 459 58.2
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 5.6e-74 282.7 408 45.3
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 7.3e-74 282.3 449 59.2
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 7.3e-74 282.3 438 60.0
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 1.6e-73 281.2 357 63.6
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 6.1e-73 279.3 442 57.7
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 1.8e-72 277.7 421 61.5
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 2.3e-72 277.3 253 60.1
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 2.0e-71 274.2 457 57.5
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 9.8e-71 271.9 403 62.8
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 4.9e-70 269.6 347 63.4
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 1.9e-69 267.7 453 56.7
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 3.2e-69 266.9 389 59.1
Cc03_g01100 Coffea canephora HOM05D002444 ORTHO05D009235 1.6e-68 264.6 258 55.8
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 3.5e-68 263.5 337 65.6
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 4.6e-68 263.1 378 64.0
AUR62016141 Chenopodium quinoa HOM05D002444 ORTHO05D009235 6.0e-68 262.7 391 64.5
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 2.3e-67 260.8 351 63.8
PGR142G0401 Punica granatum HOM05D002444 ORTHO05D009235 1.1e-66 258.5 252 56.3
COL.COLO4_29076 Corchorus olitorius HOM05D002444 ORTHO05D009235 1.9e-66 257.7 169 74.0
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 1.9e-66 257.7 398 58.0
Nitab4.5_0000169g0070 Nicotiana tabacum HOM05D002444 ORTHO05D009235 5.6e-66 256.1 259 54.1
Nitab4.5_0005333g0010 Nicotiana tabacum HOM05D002444 ORTHO05D009235 3.1e-64 250.4 259 52.5
PGSC0003DMG401007553 Solanum tuberosum HOM05D002444 ORTHO05D009235 3.1e-64 250.4 260 55.4
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 5.2e-64 249.6 257 53.3
Sopen01g026450 Solanum pennellii HOM05D002444 ORTHO05D009235 1.5e-63 248.1 258 53.1
Lalb_Chr05g0229111 Lupinus albus HOM05D002444 ORTHO05D009235 2.3e-59 234.2 189 60.3
MBI06_g47069_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 8.6e-59 232.3 269 49.4
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 1.6e-57 228.0 258 50.0
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 1.1e-56 225.3 174 62.6
Sed0015924 Sechium edule HOM05D002444 ORTHO05D009235 4.0e-56 223.4 243 52.3
AUR62016136 Chenopodium quinoa HOM05D000356 ORTHO05D000265 6.8e-48 196.1 251 77.7
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 2.2e-46 191.0 144 61.8
COL.COLO4_36843 Corchorus olitorius HOM05D002444 ORTHO05D009235 6.4e-46 189.5 170 59.4
ATR0743G013 Amborella trichopoda HOM05D002444 ORTHO05D009235 1.0e-43 182.2 206 47.1
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.1e-42 178.7 115 75.7
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 9.6e-42 175.6 463 48.8
Ciclev10006939m.g Citrus clementina HOM05D002444 ORTHO05D009235 3.8e-38 163.7 92 83.7
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 8.4e-38 162.5 238 68.9
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 8.4e-38 162.5 404 45.5
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 2.9e-30 137.5 191 44.5
SEGI_18637 Sequoiadendron giganteum HOM05D002444 ORTHO05D009235 6.4e-30 136.3 156 44.9
TAR365G0161 Trochodendron aralioides HOM05D002444 ORTHO05D009235 5.6e-26 123.2 167 46.1
AUR62043773 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.3e-25 122.1 105 61.9
Zm00001eb028360 Zea mays HOM05D002444 ORTHO05D009235 1.6e-25 121.7 136 46.3
Atru.chr2.1158 Acer truncatum HOM05D002444 ORTHO05D009235 4.8e-25 120.2 110 53.6
Atru.chr2.1176 Acer truncatum HOM05D002444 ORTHO05D009235 4.8e-25 120.2 110 53.6
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 6.9e-24 116.3 110 50.0
Gorai.005G136500 Gossypium raimondii HOM05D002444 ORTHO05D009235 6.9e-24 116.3 110 50.0
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 7.6e-23 112.8 227 63.9
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 1.7e-22 111.7 202 79.7
CARHR155470 Cardamine hirsuta HOM05D002444 ORTHO05D009235 6.0e-20 103.2 67 73.1
Phvul.003G282300 Phaseolus vulgaris HOM05D002444 ORTHO05D009235 1.8e-19 101.7 115 47.8
ClCG05G006410 Citrullus lanatus HOM05D002444 ORTHO05D009235 1.2e-12 79.0 78 48.7
Aa31LG4G1470 Aethionema arabicum HOM05D006503 ORTHO05D008116 4.3e-10 70.5 146 24.7
Carub.0002s2640 Capsella rubella HOM05D006503 ORTHO05D008116 3.7e-09 67.4 146 24.0
Thecc.09G181100 Theobroma cacao HOM05D006503 ORTHO05D008116 1.1e-08 65.9 145 27.6
Lalb_Chr07g0187591 Lupinus albus HOM05D006740 ORTHO05D008571 1.4e-08 65.5 170 25.3
Thhalv10018150m.g Eutrema salsugineum HOM05D006503 ORTHO05D008116 2.4e-08 64.7 146 25.3
Potri.010G077400 Populus trichocarpa HOM05D006740 ORTHO05D008571 2.4e-08 64.7 190 23.7
Sabra06G0034600 Salix brachista HOM05D006503 ORTHO05D008116 3.1e-08 64.3 127 27.6
Sp5g34600 Schrenkiella parvula HOM05D006503 ORTHO05D008116 3.1e-08 64.3 146 24.0
Potri.006G049400 Populus trichocarpa HOM05D006503 ORTHO05D008116 4.1e-08 63.9 127 28.3
Sabra10G0031400 Salix brachista HOM05D006740 ORTHO05D008571 6.9e-08 63.2 193 23.3
CANSAT64G0911 Cannabis sativa HOM05D006740 ORTHO05D008571 9.0e-08 62.8 189 22.8
CAN.G771.41 Capsicum annuum HOM05D006740 ORTHO05D008571 1.2e-07 62.4 165 23.0
Gohir.A05G408900 Gossypium hirsutum HOM05D006503 ORTHO05D008116 1.2e-07 62.4 138 25.4
AT1G79540 Arabidopsis thaliana HOM05D006503 ORTHO05D008116 3.4e-07 60.8 146 22.6
AL2G40180 Arabidopsis lyrata HOM05D006503 ORTHO05D008116 5.9e-07 60.1 146 23.3
Sed0019079 Sechium edule HOM05D006740 ORTHO05D008571 5.9e-07 60.1 173 23.7
Nn7g37484 Nelumbo nucifera HOM05D007202 ORTHO05D009125 1.0e-06 59.3 158 27.8
PSO782G4392 Papaver somniferum HOM05D007202 ORTHO05D009125 1.0e-06 59.3 214 23.8
CSS0042104 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 1.3e-06 58.9 157 25.5
Lsat_1_v5_gn_6_30921 Lactuca sativa HOM05D006740 ORTHO05D008571 1.7e-06 58.5 233 19.7
TWI09G0724 Tripterygium wilfordii HOM05D007409 ORTHO05D009264 1.7e-06 58.5 125 28.8
ClCG08G004220 Citrullus lanatus HOM05D007128 ORTHO05D009059 2.2e-06 58.2 151 27.2
Manes.09G020600 Manihot esculenta HOM05D006503 ORTHO05D008116 2.2e-06 58.2 134 24.6
TWI38G0189 Tripterygium wilfordii HOM05D007956 ORTHO05D010152 2.2e-06 58.2 209 26.3
AL5G28320 Arabidopsis lyrata HOM05D007409 ORTHO05D009264 2.9e-06 57.8 109 30.3
AT3G48810 Arabidopsis thaliana HOM05D007409 ORTHO05D009264 2.9e-06 57.8 109 30.3
Pp3c4_14140 Physcomitrium patens HOM05D006999 ORTHO05D008936 2.9e-06 57.8 177 23.2
Lsat_1_v5_gn_8_99341 Lactuca sativa HOM05D008470 ORTHO05D010644 3.8e-06 57.4 139 28.1
Nn5g27627 Nelumbo nucifera HOM05D007128 ORTHO05D009059 3.8e-06 57.4 144 29.2
MSTRG.10167 Avicennia marina HOM05D007409 ORTHO05D009264 5.0e-06 57.0 123 30.1
CARHR157620 Cardamine hirsuta HOM05D007409 ORTHO05D009264 5.0e-06 57.0 124 29.8
Duzib150G0906 Durio zibethinus HOM05D006503 ORTHO05D008116 5.0e-06 57.0 127 27.6
QL04p096294 Quercus lobata HOM05D006503 ORTHO05D008116 6.5e-06 56.6 121 29.8
Sed0021713 Sechium edule HOM05D007128 ORTHO05D009059 6.5e-06 56.6 151 28.5
SGA_v2.0_scaffold10G05267 Striga asiatica HOM05D006503 ORTHO05D008116 6.5e-06 56.6 145 29.7
A01p25200 Brassica napus HOM05D007409 ORTHO05D009264 8.5e-06 56.2 122 29.5
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 8.5e-06 56.2 154 25.3
MELO3C011605.2 Cucumis melo HOM05D007128 ORTHO05D009059 8.5e-06 56.2 151 27.2
DCAR_005541 Daucus carota HOM05D007128 ORTHO05D009059 8.5e-06 56.2 154 27.9
ECA248G2018 Erigeron canadensis HOM05D006503 ORTHO05D008116 8.5e-06 56.2 136 24.3
Mapoly0122s0044 Marchantia polymorpha HOM05D006596 ORTHO05D006702 8.5e-06 56.2 177 25.4


User provided reference genes

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