Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3s30_90 Physcomitrium patens HOM05D000198 ORTHO05D018991 0.0e+00 1701.0 876 100.0
Pp3s30_700 Physcomitrium patens HOM05D000198 ORTHO05D018991 1.6e-60 238.8 331 41.7
Ca_29110_v3 Cicer arietinum L. HOM05D000198 ORTHO05D018991 2.7e-52 211.5 244 45.1
Pp3s34_430 Physcomitrium patens HOM05D000198 ORTHO05D018991 3.9e-51 207.6 336 37.8
Pp3s58_320 Physcomitrium patens HOM05D000198 ORTHO05D014179 5.1e-51 207.2 265 41.1
Pp3s32_490 Physcomitrium patens HOM05D000198 ORTHO05D018991 2.9e-46 191.4 308 38.3
Pp3s30_420 Physcomitrium patens HOM05D000198 ORTHO05D018991 7.1e-45 186.8 257 44.0
Ca_28780_v3 Cicer arietinum L. HOM05D000198 ORTHO05D018991 3.0e-43 181.4 332 34.3
Medtr1101s0010 Medicago truncatula HOM05D000198 ORTHO05D018991 1.2e-36 159.5 202 45.0
Pp3s32_693 Physcomitrium patens HOM05D000372 ORTHO05D017835 9.0e-24 116.7 359 25.9
Pp3s30_70 Physcomitrium patens HOM05D004238 ORTHO05D004934 9.6e-18 96.7 234 29.1
Sed0008672 Sechium edule HOM05D000923 ORTHO05D000720 2.6e-15 88.6 474 23.0
MELO3C003906.2 Cucumis melo HOM05D000923 ORTHO05D000720 7.6e-15 87.0 479 21.7
Mapoly0036s0126 Marchantia polymorpha HOM05D000923 ORTHO05D000720 7.6e-15 87.0 480 21.5
ClCG11G011170 Citrullus lanatus HOM05D000923 ORTHO05D000720 1.0e-14 86.7 479 22.3
CsaV3_2G009260 Cucumis sativus L. HOM05D000923 ORTHO05D000720 1.3e-14 86.3 479 22.3
Sed0010795 Sechium edule HOM05D000923 ORTHO05D000720 1.3e-14 86.3 454 21.1
SMO351G0190 Selaginella moellendorffii HOM05D000923 ORTHO05D000720 2.9e-14 85.1 450 23.8
Aqoxy6G02816 Aquilegia oxysepala HOM05D000923 ORTHO05D000720 6.4e-14 84.0 455 23.3
Pp3s30_340 Physcomitrium patens HOM05D000372 ORTHO05D017835 1.1e-13 83.2 359 24.2
ECA246G1852 Erigeron canadensis HOM05D000923 ORTHO05D000720 1.4e-13 82.8 451 21.7
Pp3c27_3830 Physcomitrium patens HOM05D000923 ORTHO05D000720 3.2e-13 81.6 477 21.8
Pp3c4_27560 Physcomitrium patens HOM05D000923 ORTHO05D000720 3.2e-13 81.6 447 20.1
CiPaw.12G054500 Carya illinoinensis HOM05D000923 ORTHO05D000720 4.2e-13 81.3 432 23.1
Nitab4.5_0005080g0010 Nicotiana tabacum HOM05D000923 ORTHO05D000720 7.1e-13 80.5 480 22.5
Nitab4.5_0001924g0030 Nicotiana tabacum HOM05D000923 ORTHO05D000720 9.3e-13 80.1 480 21.9
Pp3c4_27580 Physcomitrium patens HOM05D000923 ORTHO05D000720 1.2e-12 79.7 447 19.9
Cfa012295 Carpinus fangiana HOM05D000923 ORTHO05D000720 1.6e-12 79.3 481 22.0
Mapoly0082s0006 Marchantia polymorpha HOM05D000372 ORTHO05D000948 3.5e-12 78.2 293 27.0
Dinv44683 Davidia involucrata HOM05D000923 ORTHO05D000720 6.0e-12 77.4 482 21.6
Peaxi162Scf00111g00820 Petunia axillaris HOM05D000923 ORTHO05D000720 6.0e-12 77.4 482 22.2
SEGI_20904 Sequoiadendron giganteum HOM05D000923 ORTHO05D000720 6.0e-12 77.4 478 20.5
TWI38G0669 Tripterygium wilfordii HOM05D000923 ORTHO05D000720 7.9e-12 77.0 483 21.3
COL.COLO4_17409 Corchorus olitorius HOM05D000923 ORTHO05D000720 1.0e-11 76.6 480 22.3
C06p39630 Brassica napus HOM05D000923 ORTHO05D000720 2.3e-11 75.5 474 20.5
MD02G1161700 Malus domestica HOM05D000923 ORTHO05D000720 2.3e-11 75.5 480 20.8
TAR627G0918 Trochodendron aralioides HOM05D000923 ORTHO05D000720 3.0e-11 75.1 483 21.9
BolC6t39056H Brassica oleracea HOM05D000923 ORTHO05D000720 3.9e-11 74.7 474 20.5
Duzib268G0841 Durio zibethinus HOM05D000923 ORTHO05D000720 5.1e-11 74.3 484 21.9
PGR031G2033 Punica granatum HOM05D000923 ORTHO05D000720 5.1e-11 74.3 474 20.9
Gorai.002G038300 Gossypium raimondii HOM05D000923 ORTHO05D000720 6.7e-11 73.9 481 22.0
BcaC08g46067 Brassica carinata HOM05D000923 ORTHO05D000720 8.7e-11 73.6 474 20.5
A07p33300 Brassica napus HOM05D000923 ORTHO05D000720 8.7e-11 73.6 474 20.3
BraA07t30961Z Brassica rapa HOM05D000923 ORTHO05D000720 8.7e-11 73.6 474 20.3
THA.LOC104822604 Tarenaya hassleriana HOM05D000923 ORTHO05D000720 8.7e-11 73.6 477 20.5
Duzib213G0205 Durio zibethinus HOM05D000923 ORTHO05D000720 1.5e-10 72.8 477 21.2
Gohir.D01G028800 Gossypium hirsutum HOM05D000923 ORTHO05D000720 1.9e-10 72.4 484 21.7
CAN.G1969.1 Capsicum annuum HOM05D000923 ORTHO05D000720 2.5e-10 72.0 480 22.5
Cfa023105 Carpinus fangiana HOM05D000372 ORTHO05D000948 2.5e-10 72.0 214 27.6
Sopen12g006660 Solanum pennellii HOM05D000923 ORTHO05D000720 2.5e-10 72.0 480 21.2
TWI15G0860 Tripterygium wilfordii HOM05D000923 ORTHO05D000720 2.5e-10 72.0 483 20.5
Ciclev10019003m.g Citrus clementina HOM05D000923 ORTHO05D000720 3.3e-10 71.6 480 21.5
Gohir.A01G041500 Gossypium hirsutum HOM05D000923 ORTHO05D000720 3.3e-10 71.6 481 21.6
Nn3g20794 Nelumbo nucifera HOM05D000923 ORTHO05D000720 5.7e-10 70.9 481 20.8
Potri.003G032300 Populus trichocarpa HOM05D000923 ORTHO05D000720 7.4e-10 70.5 481 21.0
PGSC0003DMG400031819 Solanum tuberosum HOM05D000923 ORTHO05D000720 7.4e-10 70.5 352 24.4
Cpa.g.sc84.52 Carica papaya HOM05D000923 ORTHO05D000720 9.6e-10 70.1 482 21.0
Mapoly0001s0284 Marchantia polymorpha HOM05D000923 ORTHO05D000720 9.6e-10 70.1 453 20.5
Mapoly0028s0036 Marchantia polymorpha HOM05D000923 ORTHO05D000720 9.6e-10 70.1 472 19.7
Pp3c15_21590 Physcomitrium patens HOM05D000372 ORTHO05D000720 9.6e-10 70.1 248 27.4
CANSAT25G1618 Cannabis sativa HOM05D000923 ORTHO05D000720 1.3e-09 69.7 307 24.1
CiPaw.11G074800 Carya illinoinensis HOM05D000923 ORTHO05D000720 1.6e-09 69.3 307 23.1
Manes.10G045000 Manihot esculenta HOM05D000923 ORTHO05D000720 1.6e-09 69.3 480 20.4
BcaB08g37314 Brassica carinata HOM05D000372 ORTHO05D003436 2.1e-09 68.9 221 28.1
Carub.0006s0919 Capsella rubella HOM05D000372 ORTHO05D003436 2.1e-09 68.9 232 26.3
HanXRQChr06g0165941 Helianthus annuus HOM05D000923 ORTHO05D000720 2.1e-09 68.9 312 23.7
Solyc09g075440.4 Solanum lycopersicum HOM05D000923 ORTHO05D000720 2.1e-09 68.9 352 24.1
PGSC0003DMG400007843 Solanum tuberosum HOM05D000923 ORTHO05D000720 2.1e-09 68.9 480 21.0
Sp6g32740 Schrenkiella parvula HOM05D000372 ORTHO05D003436 2.8e-09 68.6 234 26.9
SMO143G0077 Selaginella moellendorffii HOM05D000372 ORTHO05D000948 2.8e-09 68.6 407 21.1
CBR_g11900 Chara braunii HOM05D000923 ORTHO05D000720 3.7e-09 68.2 231 22.1
A10p26890 Brassica napus HOM05D000372 ORTHO05D003436 6.2e-09 67.4 222 27.5
BolC2t06420H Brassica oleracea HOM05D000372 ORTHO05D003436 6.2e-09 67.4 237 25.7
BraA10t44741Z Brassica rapa HOM05D000372 ORTHO05D003436 6.2e-09 67.4 222 27.5
Pp3c9_18950 Physcomitrium patens HOM05D000372 ORTHO05D000948 6.2e-09 67.4 248 27.0
PGR044G0741 Punica granatum HOM05D000923 ORTHO05D000720 6.2e-09 67.4 310 23.2
BcaC04g19290 Brassica carinata HOM05D000372 ORTHO05D003436 8.2e-09 67.0 222 27.5
C09p66090 Brassica napus HOM05D000372 ORTHO05D003436 8.2e-09 67.0 222 27.5
BolC9t59429H Brassica oleracea HOM05D000372 ORTHO05D003436 8.2e-09 67.0 222 27.5
Thhalv10012606m.g Eutrema salsugineum HOM05D000372 ORTHO05D003436 8.2e-09 67.0 232 27.6
Pp3c16_13660 Physcomitrium patens HOM05D000923 ORTHO05D000720 8.2e-09 67.0 438 19.4
AagrBONN_evm.TU.Sc2ySwM_117.78 Anthoceros agrestis HOM05D000372 ORTHO05D000720 1.1e-08 66.6 239 24.7
C03p05430 Brassica napus HOM05D000372 ORTHO05D003436 1.1e-08 66.6 242 26.4
BolC3t13054H Brassica oleracea HOM05D000372 ORTHO05D003436 1.1e-08 66.6 242 26.4
Nitab4.5_0000116g0290 Nicotiana tabacum HOM05D000923 ORTHO05D000720 1.1e-08 66.6 315 24.1
Sopen09g030220 Solanum pennellii HOM05D000923 ORTHO05D000720 1.1e-08 66.6 335 24.5
SGA_v2.0_scaffold1G00344 Striga asiatica HOM05D000923 ORTHO05D000720 1.1e-08 66.6 459 22.0
Haze_08433 Corylus avellana HOM05D000923 ORTHO05D000720 1.4e-08 66.2 418 23.2
Migut.M00655 Erythranthe guttata HOM05D000923 ORTHO05D000720 1.4e-08 66.2 482 19.9
Thecc.07G147200 Theobroma cacao HOM05D000923 ORTHO05D000720 1.4e-08 66.2 484 20.7
HPP92_016955 Vanilla planifolia HOM05D000923 ORTHO05D000720 1.4e-08 66.2 290 26.2
BraA02t05044Z Brassica rapa HOM05D000372 ORTHO05D003436 1.8e-08 65.9 235 25.5
CARHR202600 Cardamine hirsuta HOM05D000372 ORTHO05D003436 1.8e-08 65.9 234 25.6
Peaxi162Scf00000g00584 Petunia axillaris HOM05D000923 ORTHO05D000720 1.8e-08 65.9 307 24.4
SMO358G0569 Selaginella moellendorffii HOM05D000372 ORTHO05D000948 1.8e-08 65.9 397 21.2
Aqoxy3G00627 Aquilegia oxysepala HOM05D000923 ORTHO05D000720 2.4e-08 65.5 312 25.0
Aqoxy2G02871 Aquilegia oxysepala HOM05D000923 ORTHO05D000720 3.1e-08 65.1 312 24.7
A02p00610 Brassica napus HOM05D000372 ORTHO05D003436 4.0e-08 64.7 235 25.5
DCAR_002862 Daucus carota HOM05D000923 ORTHO05D000720 4.0e-08 64.7 287 24.7
Nn4g25723 Nelumbo nucifera HOM05D000923 ORTHO05D000720 4.0e-08 64.7 285 23.2
PSO764G0198 Papaver somniferum HOM05D000923 ORTHO05D000720 4.0e-08 64.7 309 23.0
SMO165G0139 Selaginella moellendorffii HOM05D000372 ORTHO05D000948 4.0e-08 64.7 238 23.5
BcaC03g13326 Brassica carinata HOM05D000372 ORTHO05D003436 6.9e-08 63.9 235 24.7
Lsat_1_v5_gn_3_6160 Lactuca sativa HOM05D000923 ORTHO05D000720 6.9e-08 63.9 307 23.5
C02p04600 Brassica napus HOM05D000372 ORTHO05D003436 9.0e-08 63.5 235 24.7
PSO478G2577 Papaver somniferum HOM05D000196 ORTHO05D000279 9.0e-08 63.5 120 30.8
PSO782G0967 Papaver somniferum HOM05D000196 ORTHO05D000279 9.0e-08 63.5 119 30.3
PSO782G4833 Papaver somniferum HOM05D000196 ORTHO05D000279 9.0e-08 63.5 119 30.3
AUR62008295 Chenopodium quinoa HOM05D000503 ORTHO05D000361 1.2e-07 63.2 137 28.5
Nitab4.5_0000803g0010 Nicotiana tabacum HOM05D000923 ORTHO05D000720 1.2e-07 63.2 315 23.5
Pp3c1_29330 Physcomitrium patens HOM05D000923 ORTHO05D000720 1.2e-07 63.2 487 20.7
AagrBONN_evm.TU.Sc2ySwM_117.1678 Anthoceros agrestis HOM05D000372 ORTHO05D003436 2.0e-07 62.4 230 25.2
Cc05_g10220 Coffea canephora HOM05D000923 ORTHO05D000720 2.0e-07 62.4 481 19.1
Peaxi162Scf00001g34002 Petunia axillaris HOM05D000923 ORTHO05D000720 2.0e-07 62.4 318 23.6
Solyc12g011330.4 Solanum lycopersicum HOM05D000923 ORTHO05D000720 2.0e-07 62.4 307 24.1
AT5G10720 Arabidopsis thaliana HOM05D000372 ORTHO05D003436 2.6e-07 62.0 230 25.2
AUR62031057 Chenopodium quinoa HOM05D000503 ORTHO05D000361 2.6e-07 62.0 137 27.7
MCO04G164 Micromonas commoda HOM05D000372 ORTHO05D004502 2.6e-07 62.0 178 29.2
PGR031G0356 Punica granatum HOM05D000196 ORTHO05D000279 3.4e-07 61.6 133 29.3
Sp2g06120 Schrenkiella parvula HOM05D000372 ORTHO05D003436 4.5e-07 61.2 236 25.8
Manes.07G101500 Manihot esculenta HOM05D000923 ORTHO05D000720 5.8e-07 60.8 306 21.9
BcaB01g05503 Brassica carinata HOM05D000372 ORTHO05D003436 7.6e-07 60.5 269 23.8
SMO367G0856 Selaginella moellendorffii HOM05D000372 ORTHO05D000948 7.6e-07 60.5 208 25.5
Zm00001eb282800 Zea mays HOM05D000923 ORTHO05D000720 1.0e-06 60.1 348 22.4
Cfa025116 Carpinus fangiana HOM05D000372 ORTHO05D004502 1.3e-06 59.7 236 23.3
COL.COLO4_23303 Corchorus olitorius HOM05D000923 ORTHO05D000720 1.3e-06 59.7 305 22.6
MCO14G487 Micromonas commoda HOM05D000372 ORTHO05D000720 1.3e-06 59.7 350 21.7
Pp3c10_15350 Physcomitrium patens HOM05D000923 ORTHO05D000720 1.3e-06 59.7 406 21.2
Pp3c6_15020 Physcomitrium patens HOM05D000372 ORTHO05D000720 1.3e-06 59.7 234 25.6
Sed0001436 Sechium edule HOM05D000923 ORTHO05D000720 1.3e-06 59.7 311 21.9
Aa31LG3G16390 Aethionema arabicum HOM05D000372 ORTHO05D003436 1.7e-06 59.3 244 24.2
Cfa017850 Carpinus fangiana HOM05D000372 ORTHO05D003436 1.7e-06 59.3 239 24.7
CBR_g20397 Chara braunii HOM05D000923 ORTHO05D000720 2.2e-06 58.9 147 25.9
Cre02.g074150 Chlamydomonas reinhardtii HOM05D000372 ORTHO05D004502 2.2e-06 58.9 268 24.6
Pp3c1_18090 Physcomitrium patens HOM05D000372 ORTHO05D000720 2.2e-06 58.9 243 24.7
GSVIVG01033164001 Vitis vinifera HOM05D000372 ORTHO05D003436 2.2e-06 58.9 239 25.9
Ca_29079_v3 Cicer arietinum L. HOM05D000372 ORTHO05D017835 2.9e-06 58.5 197 25.4
Duzib133G0591 Durio zibethinus HOM05D000923 ORTHO05D000720 3.8e-06 58.2 308 21.1
arahy.Tifrunner.gnm1.ann1.15FVU2 Arachis hypogaea HOM05D000372 ORTHO05D004502 4.9e-06 57.8 335 23.0
Nitab4.5_0000505g0130 Nicotiana tabacum HOM05D000923 ORTHO05D000720 4.9e-06 57.8 321 21.2
AagrBONN_evm.TU.Sc2ySwM_344.1882 Anthoceros agrestis HOM05D000923 ORTHO05D000720 6.5e-06 57.4 279 22.6
EL10Ac5g10850 Beta vulgaris HOM05D000503 ORTHO05D000361 6.5e-06 57.4 129 29.5
Sabra01G0157500 Salix brachista HOM05D000923 ORTHO05D000720 6.5e-06 57.4 377 20.4
Sabra03G0018600 Salix brachista HOM05D000923 ORTHO05D000720 6.5e-06 57.4 329 20.7
Cre11.g477400 Chlamydomonas reinhardtii HOM05D007959 ORTHO05D145476 8.4e-06 57.0 124 29.0
THA.LOC104822950 Tarenaya hassleriana HOM05D000503 ORTHO05D000361 8.4e-06 57.0 161 27.3


User provided reference genes

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