Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.1e-121 439.9 211 100.0
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.3e-98 363.2 204 80.9
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 4.7e-19 99.0 200 29.5
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 2.9e-13 79.7 172 30.2
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 8.5e-13 78.2 174 27.0
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 9.4e-12 74.7 166 30.1
MCO09G247 Micromonas commoda HOM05D006499 ORTHO05D007874 2.1e-11 73.6 185 28.6
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 2.1e-11 73.6 137 29.9
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 3.6e-11 72.8 166 29.5
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 4.7e-11 72.4 166 29.5
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 4.7e-11 72.4 166 28.9
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 4.7e-11 72.4 176 29.0
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.0e-10 71.2 176 28.4
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 1.8e-10 70.5 175 29.1
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 4.0e-10 69.3 174 29.3
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 4.0e-10 69.3 176 27.8
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 6.8e-10 68.6 172 25.6
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 6.8e-10 68.6 168 31.5
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 6.8e-10 68.6 180 27.2
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 8.8e-10 68.2 173 28.3
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 8.8e-10 68.2 140 32.9
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 1.5e-09 67.4 137 31.4
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 2.0e-09 67.0 176 28.4
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 2.0e-09 67.0 138 31.9
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 2.6e-09 66.6 157 27.4
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 2.6e-09 66.6 175 26.9
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 2.6e-09 66.6 175 26.9
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 3.4e-09 66.2 82 40.2
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 3.4e-09 66.2 184 29.3
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 3.4e-09 66.2 171 29.2
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 3.4e-09 66.2 172 26.7
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 5.7e-09 65.5 173 27.7
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 5.7e-09 65.5 169 27.2
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 5.7e-09 65.5 182 31.9
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 7.5e-09 65.1 141 28.4
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 9.8e-09 64.7 193 27.5
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 9.8e-09 64.7 173 26.0
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 9.8e-09 64.7 176 27.8
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 1.3e-08 64.3 137 27.7
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 1.3e-08 64.3 178 24.2
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 1.3e-08 64.3 161 28.0
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 1.7e-08 63.9 168 26.8
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 1.7e-08 63.9 141 27.7
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 1.7e-08 63.9 147 29.3
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 2.2e-08 63.5 169 28.4
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 2.2e-08 63.5 170 27.1
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 2.2e-08 63.5 143 29.4
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 2.2e-08 63.5 154 27.9
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 2.8e-08 63.2 144 27.1
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 3.7e-08 62.8 170 25.3
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 3.7e-08 62.8 142 28.9
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 4.8e-08 62.4 170 28.2
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 4.8e-08 62.4 176 29.5
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 4.8e-08 62.4 137 27.7
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 4.8e-08 62.4 143 30.1
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 4.8e-08 62.4 169 29.6
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 6.3e-08 62.0 142 31.0
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 6.3e-08 62.0 156 26.9
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 6.3e-08 62.0 176 27.3
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 6.3e-08 62.0 175 26.3
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 6.3e-08 62.0 141 27.0
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 6.3e-08 62.0 177 27.7
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 8.3e-08 61.6 170 25.3
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 1.1e-07 61.2 142 28.2
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 1.1e-07 61.2 135 31.1
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 1.1e-07 61.2 154 26.6
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 1.1e-07 61.2 178 28.7
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 1.1e-07 61.2 178 28.7
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 1.4e-07 60.8 142 30.3
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 1.4e-07 60.8 145 26.2
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.8e-07 60.5 198 26.3
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 1.8e-07 60.5 143 26.6
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 1.8e-07 60.5 135 28.1
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 2.4e-07 60.1 174 29.3
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 3.1e-07 59.7 170 28.8
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 4.1e-07 59.3 140 30.0
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 4.1e-07 59.3 172 28.5
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 4.1e-07 59.3 135 28.1
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 4.1e-07 59.3 125 28.8
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 5.4e-07 58.9 152 26.3
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 5.4e-07 58.9 166 29.5
Cre06.g305500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 7.0e-07 58.5 89 31.5
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 7.0e-07 58.5 136 26.5
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 9.1e-07 58.2 141 25.5
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 9.1e-07 58.2 172 28.5
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 9.1e-07 58.2 142 26.1
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 9.1e-07 58.2 180 26.7
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 1.2e-06 57.8 143 29.4
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 1.2e-06 57.8 143 29.4
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 1.2e-06 57.8 171 28.7
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 1.2e-06 57.8 178 28.1
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 2.0e-06 57.0 171 30.4
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 2.7e-06 56.6 177 27.1
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 2.7e-06 56.6 142 26.8
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 3.5e-06 56.2 102 30.4
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 3.5e-06 56.2 141 27.0
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 4.5e-06 55.8 170 26.5
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 4.5e-06 55.8 136 27.2
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 5.9e-06 55.5 175 29.1
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 7.7e-06 55.1 101 32.7


User provided reference genes

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