Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 4.0e-102 374.8 190 100.0
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 1.6e-39 166.8 179 44.7
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 5.8e-37 158.3 176 45.5
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 1.9e-35 153.3 180 42.8
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 7.9e-34 147.9 172 42.4
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 1.3e-31 140.6 167 43.1
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 6.9e-30 134.8 171 40.4
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 9.0e-30 134.4 159 42.8
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 1.5e-29 133.7 160 42.5
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 2.0e-29 133.3 170 39.4
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 4.5e-29 132.1 170 40.0
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 5.9e-29 131.7 159 41.5
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 5.9e-29 131.7 170 38.2
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 5.9e-29 131.7 170 38.8
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 5.9e-29 131.7 170 39.4
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 5.9e-29 131.7 170 39.4
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 7.6e-29 131.3 170 37.1
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 7.6e-29 131.3 170 38.8
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 7.6e-29 131.3 170 38.2
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 7.6e-29 131.3 159 41.5
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 7.6e-29 131.3 170 38.8
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 7.6e-29 131.3 180 38.3
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 1.0e-28 131.0 159 42.1
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 1.3e-28 130.6 170 38.8
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 1.7e-28 130.2 170 38.8
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 1.7e-28 130.2 170 38.8
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 2.2e-28 129.8 170 39.4
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 2.2e-28 129.8 170 40.0
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 2.9e-28 129.4 170 37.6
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 2.9e-28 129.4 171 39.8
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 3.8e-28 129.0 160 41.9
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 5.0e-28 128.6 170 37.6
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 5.0e-28 128.6 165 37.6
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 5.0e-28 128.6 160 40.0
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 5.0e-28 128.6 163 39.3
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 6.5e-28 128.3 170 38.8
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 6.5e-28 128.3 170 38.2
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 8.4e-28 127.9 170 38.8
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 8.4e-28 127.9 169 39.1
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 1.1e-27 127.5 170 37.1
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 1.1e-27 127.5 176 37.5
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 1.4e-27 127.1 170 38.8
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 1.4e-27 127.1 170 38.8
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 1.4e-27 127.1 172 38.4
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 1.4e-27 127.1 173 38.7
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 1.9e-27 126.7 170 38.8
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 1.9e-27 126.7 159 38.4
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 2.5e-27 126.3 170 38.2
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 2.5e-27 126.3 170 38.8
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 2.5e-27 126.3 170 38.8
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 2.5e-27 126.3 170 38.8
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 2.5e-27 126.3 159 39.6
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 2.5e-27 126.3 160 39.4
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 2.5e-27 126.3 159 39.6
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 3.2e-27 125.9 170 38.8
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 3.2e-27 125.9 159 39.6
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 4.2e-27 125.6 170 38.2
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 5.5e-27 125.2 181 37.0
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 7.2e-27 124.8 166 37.3
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 1.2e-26 124.0 170 39.4
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 1.2e-26 124.0 170 37.1
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 1.2e-26 124.0 159 37.7
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 1.2e-26 124.0 159 39.6
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 1.6e-26 123.6 159 37.7
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 2.1e-26 123.2 170 35.9
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 2.1e-26 123.2 170 38.2
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 2.7e-26 122.9 169 35.5
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 3.5e-26 122.5 170 37.6
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 3.5e-26 122.5 177 36.2
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 3.5e-26 122.5 177 35.0
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 3.5e-26 122.5 159 38.4
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 6.1e-26 121.7 170 36.5
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 6.1e-26 121.7 170 36.5
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 6.1e-26 121.7 170 36.5
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 6.1e-26 121.7 160 38.1
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 7.9e-26 121.3 170 36.5
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 7.9e-26 121.3 170 38.8
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 1.0e-25 120.9 170 36.5
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 1.0e-25 120.9 171 38.0
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 1.3e-25 120.6 158 38.0
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 1.3e-25 120.6 170 36.5
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 3.0e-25 119.4 176 35.2
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 3.9e-25 119.0 171 37.4
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 3.9e-25 119.0 168 33.9
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 6.7e-25 118.2 147 40.8
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 6.7e-25 118.2 168 37.5
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 1.5e-24 117.1 170 38.2
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 1.5e-24 117.1 159 35.8
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 1.9e-24 116.7 170 35.9
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 2.5e-24 116.3 170 34.7
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 3.3e-24 115.9 167 38.9
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 3.3e-24 115.9 159 35.8
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 5.7e-24 115.2 160 39.4
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 1.6e-23 113.6 170 35.9
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 1.6e-23 113.6 171 33.9
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 2.2e-23 113.2 170 36.5
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 2.8e-23 112.8 170 35.3
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 3.7e-23 112.5 170 35.3
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 1.1e-22 110.9 175 36.0
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 1.8e-22 110.2 170 34.7
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 1.8e-22 110.2 170 34.7
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 1.8e-22 110.2 170 34.1
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 2.4e-22 109.8 173 34.7
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 5.3e-22 108.6 177 35.0
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 9.0e-22 107.8 170 34.1
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 4.5e-21 105.5 158 37.3
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.1e-19 100.9 129 40.3
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 1.4e-19 100.5 158 36.7
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 1.9e-19 100.1 159 37.1
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 1.2e-18 97.4 160 32.5
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 2.7e-18 96.3 161 33.5
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 4.6e-18 95.5 104 43.3
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.4e-17 94.0 133 37.6
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.4e-17 94.0 129 37.2
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 1.8e-17 93.6 129 38.0
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.5e-16 90.5 150 36.0
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 2.5e-16 89.7 130 36.9
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 1.5e-13 80.5 97 40.2
Mapoly0009s0213 Marchantia polymorpha HOM05D003111 ORTHO05D003502 1.0e-12 77.8 175 24.6
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.4e-11 73.9 92 40.2
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 1.2e-10 70.9 97 39.2
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 2.1e-10 70.1 80 45.0
DCAR_016220 Daucus carota HOM05D003111 ORTHO05D003502 6.1e-10 68.6 160 28.1
EL10Ac8g18506 Beta vulgaris HOM05D003111 ORTHO05D003502 8.8e-09 64.7 175 22.9
Carub.0007s2934 Capsella rubella HOM05D003111 ORTHO05D003502 1.5e-08 63.9 167 26.9
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.5e-08 63.9 91 35.2
SHI02767 Sapria himalayana HOM05D003111 ORTHO05D003502 2.0e-08 63.5 164 22.6
AagrBONN_evm.TU.Sc2ySwM_117.1809 Anthoceros agrestis HOM05D003111 ORTHO05D003502 2.6e-08 63.2 156 25.6
Aa31sc99G30 Aethionema arabicum HOM05D003111 ORTHO05D003502 3.3e-08 62.8 133 27.8
Migut.I00870 Erythranthe guttata HOM05D003111 ORTHO05D003502 5.7e-08 62.0 158 24.7
Pp3c18_21320 Physcomitrium patens HOM05D003111 ORTHO05D003502 2.2e-07 60.1 164 25.6
Potri.006G159400 Populus trichocarpa HOM05D003111 ORTHO05D003502 6.3e-07 58.5 147 23.8
SalBow2G0718 Salvia bowleyana HOM05D003111 ORTHO05D003502 2.4e-06 56.6 181 26.0
AagrBONN_evm.TU.Sc2ySwM_344.1359 Anthoceros agrestis HOM05D003111 ORTHO05D003502 3.1e-06 56.2 153 23.5
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 9.1e-06 54.7 66 37.9


User provided reference genes

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