Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 3.2e-102 375.2 198 100.0
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 4.0e-89 331.6 200 89.0
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 1.5e-56 223.4 203 64.0
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 9.0e-49 197.6 121 76.9
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 1.2e-45 187.2 118 73.7
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 3.1e-41 172.6 163 55.8
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 6.5e-39 164.9 153 54.9
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 6.5e-39 164.9 153 54.9
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 6.5e-39 164.9 198 50.0
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.4e-38 163.7 190 48.9
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.4e-38 163.7 153 54.9
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 1.4e-38 163.7 185 48.1
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 7.2e-38 161.4 200 48.5
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 1.2e-37 160.6 187 46.0
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.6e-37 160.2 202 46.0
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 2.1e-37 159.8 166 51.8
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 3.6e-37 159.1 147 55.1
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 3.6e-37 159.1 205 45.9
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 3.6e-37 159.1 167 49.1
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 6.1e-37 158.3 149 54.4
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 1.0e-36 157.5 169 49.1
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.0e-36 157.5 153 52.9
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.4e-36 157.1 151 53.0
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 1.8e-36 156.8 195 47.2
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 1.8e-36 156.8 190 46.3
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.8e-36 156.8 190 46.8
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 2.3e-36 156.4 153 52.9
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 3.0e-36 156.0 165 49.1
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 3.0e-36 156.0 132 56.1
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 3.9e-36 155.6 149 52.3
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 5.1e-36 155.2 149 53.0
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 5.1e-36 155.2 157 51.0
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 5.1e-36 155.2 122 59.0
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 6.7e-36 154.8 185 46.5
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 6.7e-36 154.8 193 47.2
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 6.7e-36 154.8 122 57.4
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 8.8e-36 154.5 149 53.0
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.1e-35 154.1 150 52.7
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 1.1e-35 154.1 155 48.4
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.1e-35 154.1 167 48.5
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.1e-35 154.1 113 61.9
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 1.1e-35 154.1 122 59.0
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.5e-35 153.7 155 51.0
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 1.5e-35 153.7 194 43.8
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 1.5e-35 153.7 151 51.0
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 1.5e-35 153.7 167 47.9
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.5e-35 153.7 172 48.3
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 2.0e-35 153.3 108 63.0
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.0e-35 153.3 185 46.5
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 2.0e-35 153.3 132 57.6
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 2.0e-35 153.3 113 62.8
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 2.0e-35 153.3 148 52.0
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 2.0e-35 153.3 116 60.3
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 2.6e-35 152.9 107 67.3
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 3.3e-35 152.5 151 53.0
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 3.3e-35 152.5 168 49.4
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 3.3e-35 152.5 149 53.0
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 3.3e-35 152.5 149 53.0
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 3.3e-35 152.5 149 53.0
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 3.3e-35 152.5 149 53.0
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 4.4e-35 152.1 154 51.3
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 4.4e-35 152.1 132 56.8
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 4.4e-35 152.1 194 46.4
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 5.7e-35 151.8 162 50.0
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 5.7e-35 151.8 147 53.1
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 5.7e-35 151.8 147 53.1
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 5.7e-35 151.8 112 61.6
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 7.4e-35 151.4 162 48.8
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 7.4e-35 151.4 192 44.8
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 7.4e-35 151.4 184 48.4
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 7.4e-35 151.4 184 48.4
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 7.4e-35 151.4 184 48.4
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 7.4e-35 151.4 202 44.1
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 9.7e-35 151.0 150 52.0
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 9.7e-35 151.0 122 59.0
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.3e-34 150.6 147 53.1
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 1.3e-34 150.6 147 53.1
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.3e-34 150.6 147 53.1
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.3e-34 150.6 157 51.0
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.7e-34 150.2 175 49.1
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.7e-34 150.2 116 57.8
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 2.2e-34 149.8 113 60.2
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.2e-34 149.8 124 56.5
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 2.8e-34 149.4 206 44.2
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 2.8e-34 149.4 163 49.1
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 2.8e-34 149.4 108 62.0
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 2.8e-34 149.4 193 46.1
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 2.8e-34 149.4 193 46.1
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 3.7e-34 149.1 108 63.9
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 3.7e-34 149.1 121 58.7
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.7e-34 149.1 113 60.2
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.7e-34 149.1 121 58.7
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.7e-34 149.1 121 58.7
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 3.7e-34 149.1 153 49.7
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.8e-34 148.7 106 63.2
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.8e-34 148.7 106 63.2
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 4.8e-34 148.7 118 57.6
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 6.3e-34 148.3 198 44.4
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 8.2e-34 147.9 198 46.0
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 1.1e-33 147.5 122 55.7
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.1e-33 147.5 193 45.6
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 1.4e-33 147.1 113 59.3
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 1.8e-33 146.7 116 56.9
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 1.8e-33 146.7 167 47.9
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 2.4e-33 146.4 191 42.4
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 3.1e-33 146.0 198 44.4
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 3.1e-33 146.0 198 45.5
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 3.1e-33 146.0 113 58.4
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 3.1e-33 146.0 106 62.3
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 4.1e-33 145.6 136 51.5
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 7.0e-33 144.8 116 58.6
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 9.1e-33 144.4 207 43.0
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 1.2e-32 144.1 116 54.3
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.6e-32 143.7 106 59.4
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 1.6e-32 143.7 116 56.0
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 3.5e-32 142.5 209 41.6
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 4.5e-32 142.1 116 56.0
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 1.3e-31 140.6 206 41.7
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 1.7e-31 140.2 141 52.5
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 3.8e-31 139.0 116 52.6
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.1e-30 137.5 106 57.5
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.9e-30 136.7 159 44.0
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.9e-30 136.7 159 44.0
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 2.5e-30 136.3 97 62.9
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 7.2e-30 134.8 100 60.0
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 1.6e-29 133.7 103 57.3
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 2.1e-29 133.3 102 57.8
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.6e-29 132.5 197 42.6
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 3.6e-29 132.5 151 46.4
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.5e-27 127.1 199 41.7
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 2.2e-26 123.2 90 60.0
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 6.3e-26 121.7 131 48.9
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 4.5e-24 115.5 168 40.5
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.6e-21 107.1 76 63.2
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 2.7e-21 106.3 154 41.6
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 6.1e-21 105.1 295 30.5
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-17 94.4 67 64.2
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-17 94.4 67 64.2
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.6e-16 90.5 68 60.3
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 1.1e-14 84.3 117 41.0
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 4.1e-09 65.9 55 52.7
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 7.0e-09 65.1 48 60.4
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 3.3e-06 56.2 128 35.9


User provided reference genes

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