Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_8980 Physcomitrium patens HOM05D003555 ORTHO05D004542 1.8e-218 762.3 384 100.0
Pp3c13_14220 Physcomitrium patens HOM05D003555 ORTHO05D004542 5.7e-108 395.2 379 53.6
VMungo0464G0001 Vigna mungo HOM05D003555 ORTHO05D004542 9.2e-106 387.9 378 51.6
SMO200G0006 Selaginella moellendorffii HOM05D003555 ORTHO05D004542 1.6e-105 387.1 379 51.5
Mapoly0126s0013 Marchantia polymorpha HOM05D003555 ORTHO05D004542 5.9e-105 385.2 381 51.7
Phvul.004G070900 Phaseolus vulgaris HOM05D003555 ORTHO05D004542 1.7e-104 383.6 377 51.7
SEGI_35214 Sequoiadendron giganteum HOM05D003555 ORTHO05D004542 2.3e-104 383.3 374 51.3
QL02p062748 Quercus lobata HOM05D003555 ORTHO05D004542 5.6e-103 378.6 378 51.6
Glyma.02G065500 Glycine max HOM05D003555 ORTHO05D004542 1.6e-102 377.1 380 51.6
Atru.chr6.2636 Acer truncatum HOM05D003555 ORTHO05D004542 2.8e-102 376.3 377 51.2
Sp1g11410 Schrenkiella parvula HOM05D003555 ORTHO05D004542 4.7e-102 375.6 381 50.7
TWI34G1938 Tripterygium wilfordii HOM05D003555 ORTHO05D004542 4.7e-102 375.6 377 50.1
Glyma.16G146600 Glycine max HOM05D003555 ORTHO05D004542 8.0e-102 374.8 377 50.9
Carub.0001s1258 Capsella rubella HOM05D003555 ORTHO05D004542 1.0e-101 374.4 378 50.8
Prupe.3G312200 Prunus persica HOM05D003555 ORTHO05D004542 4.0e-101 372.5 378 50.3
A06p08830 Brassica napus HOM05D003555 ORTHO05D004542 6.8e-101 371.7 378 50.0
BraA06t24078Z Brassica rapa HOM05D003555 ORTHO05D004542 6.8e-101 371.7 378 50.0
BraA09t41708Z Brassica rapa HOM05D003555 ORTHO05D004542 6.8e-101 371.7 384 50.3
Ciclev10015638m.g Citrus clementina HOM05D003555 ORTHO05D004542 8.9e-101 371.3 376 50.5
Thhalv10007948m.g Eutrema salsugineum HOM05D003555 ORTHO05D004542 1.2e-100 370.9 378 50.5
TWI60G1549 Tripterygium wilfordii HOM05D003555 ORTHO05D004542 1.2e-100 370.9 377 49.9
C08p47080 Brassica napus HOM05D003555 ORTHO05D004542 1.5e-100 370.5 379 50.7
Dinv11219 Davidia involucrata HOM05D003555 ORTHO05D004542 1.5e-100 370.5 376 49.7
AT1G12840 Arabidopsis thaliana HOM05D003555 ORTHO05D004542 2.0e-100 370.2 378 50.5
A08p32590 Brassica napus HOM05D003555 ORTHO05D004542 2.0e-100 370.2 379 50.1
Cfa007176 Carpinus fangiana HOM05D003555 ORTHO05D004542 2.0e-100 370.2 378 50.3
MBI11_g08158_MAGBIO Magnolia biondii HOM05D003555 ORTHO05D004542 2.0e-100 370.2 376 49.2
THA.LOC104805306 Tarenaya hassleriana HOM05D003555 ORTHO05D004542 2.0e-100 370.2 378 49.5
HanXRQChr16g0528421 Helianthus annuus HOM05D003555 ORTHO05D004542 2.6e-100 369.8 376 49.2
C05p10440 Brassica napus HOM05D003555 ORTHO05D004542 3.4e-100 369.4 380 50.3
C08p15700 Brassica napus HOM05D003555 ORTHO05D004542 3.4e-100 369.4 379 50.1
BolC5t29790H Brassica oleracea HOM05D003555 ORTHO05D004542 3.4e-100 369.4 380 50.3
BolC8t49197H Brassica oleracea HOM05D003555 ORTHO05D004542 3.4e-100 369.4 379 50.1
BraA08t35183Z Brassica rapa HOM05D003555 ORTHO05D004542 3.4e-100 369.4 379 50.1
BcaB03g13163 Brassica carinata HOM05D003555 ORTHO05D004542 4.4e-100 369.0 379 50.1
BcaC07g41676 Brassica carinata HOM05D003555 ORTHO05D004542 4.4e-100 369.0 381 50.4
A09p63580 Brassica napus HOM05D003555 ORTHO05D004542 4.4e-100 369.0 380 50.5
BolC8t50972H Brassica oleracea HOM05D003555 ORTHO05D004542 4.4e-100 369.0 381 50.4
Manes.04G091900 Manihot esculenta HOM05D003555 ORTHO05D004542 4.4e-100 369.0 378 50.5
BcaC05g25110 Brassica carinata HOM05D003555 ORTHO05D004542 5.7e-100 368.6 379 50.1
Lalb_Chr24g0403201 Lupinus albus HOM05D003555 ORTHO05D004542 5.7e-100 368.6 377 50.1
CANSAT64G0789 Cannabis sativa HOM05D003555 ORTHO05D004542 7.5e-100 368.2 375 49.1
CARHR013160 Cardamine hirsuta HOM05D003555 ORTHO05D004542 7.5e-100 368.2 381 49.6
Lj1g0000762 Lotus japonicus HOM05D003555 ORTHO05D004542 7.5e-100 368.2 377 49.9
PGR083G2609 Punica granatum HOM05D003555 ORTHO05D004542 7.5e-100 368.2 379 49.6
BcaC07g40270 Brassica carinata HOM05D003555 ORTHO05D004542 9.8e-100 367.9 381 50.1
Hma1.2p1_1187F.1_g265140 Hydrangea macrophylla HOM05D003555 ORTHO05D004542 9.8e-100 367.9 376 48.4
Lalb_Chr14g0363981 Lupinus albus HOM05D003555 ORTHO05D004542 9.8e-100 367.9 378 49.7
BcaB08g34247 Brassica carinata HOM05D003555 ORTHO05D004542 1.3e-99 367.5 380 50.5
C08p33730 Brassica napus HOM05D003555 ORTHO05D004542 1.3e-99 367.5 381 50.4
CiPaw.04G001900 Carya illinoinensis HOM05D003555 ORTHO05D004542 1.3e-99 367.5 379 48.0
RcHm_v2.0_Chr2g0176361 Rosa chinensis HOM05D003555 ORTHO05D004542 1.3e-99 367.5 378 50.0
Zm00001eb345260 Zea mays HOM05D003555 ORTHO05D004542 1.3e-99 367.5 378 49.7
BcaC05g25150 Brassica carinata HOM05D003555 ORTHO05D004542 1.7e-99 367.1 380 50.0
arahy.Tifrunner.gnm1.ann1.HQ0MCX Arachis hypogaea HOM05D003555 ORTHO05D004542 2.9e-99 366.3 395 47.8
Dinv23202 Davidia involucrata HOM05D003555 ORTHO05D004542 2.9e-99 366.3 376 48.7
Thecc.04G045300 Theobroma cacao HOM05D003555 ORTHO05D004542 2.9e-99 366.3 377 48.5
AL1G24480 Arabidopsis lyrata HOM05D003555 ORTHO05D004542 3.7e-99 365.9 381 49.9
CAN.G637.54 Capsicum annuum HOM05D003555 ORTHO05D004542 3.7e-99 365.9 378 50.0
arahy.Tifrunner.gnm1.ann1.N4MBCZ Arachis hypogaea HOM05D003555 ORTHO05D004542 4.9e-99 365.5 398 47.2
Duzib187G1504 Durio zibethinus HOM05D003555 ORTHO05D004542 4.9e-99 365.5 378 49.2
Duzib264G0281 Durio zibethinus HOM05D003555 ORTHO05D004542 4.9e-99 365.5 378 49.5
CsaV3_5G020170 Cucumis sativus L. HOM05D003555 ORTHO05D004542 6.4e-99 365.2 379 49.1
Glyma.16G050200 Glycine max HOM05D003555 ORTHO05D004542 6.4e-99 365.2 379 49.1
Lj5A90G23 Lonicera japonica HOM05D003555 ORTHO05D004542 6.4e-99 365.2 377 48.3
MELO3C025061.2 Cucumis melo HOM05D003555 ORTHO05D004542 8.3e-99 364.8 379 49.1
ECA232G4336 Erigeron canadensis HOM05D003555 ORTHO05D004542 8.3e-99 364.8 378 48.9
MD09G1004500 Malus domestica HOM05D003555 ORTHO05D004542 1.8e-98 363.6 378 49.7
Phvul.001G086700 Phaseolus vulgaris HOM05D003555 ORTHO05D004542 1.8e-98 363.6 379 49.3
COL.COLO4_10540 Corchorus olitorius HOM05D003555 ORTHO05D004542 2.4e-98 363.2 377 48.0
PSO478G0165 Papaver somniferum HOM05D003555 ORTHO05D004542 2.4e-98 363.2 376 49.7
CAN.G257.127 Capsicum annuum HOM05D003555 ORTHO05D004542 3.2e-98 362.8 379 49.1
Glyma.19G101000 Glycine max HOM05D003555 ORTHO05D004542 3.2e-98 362.8 380 49.5
Os05g0593100 Oryza sativa ssp. japonica HOM05D003555 ORTHO05D004542 3.2e-98 362.8 378 49.7
THA.LOC104825653 Tarenaya hassleriana HOM05D003555 ORTHO05D004542 3.2e-98 362.8 379 49.1
Eucgr.G01943 Eucalyptus grandis HOM05D003555 ORTHO05D004542 4.1e-98 362.5 381 49.6
Nn4g22182 Nelumbo nucifera HOM05D003555 ORTHO05D004542 4.1e-98 362.5 377 49.6
Solyc03g097800.4 Solanum lycopersicum HOM05D003555 ORTHO05D004542 4.1e-98 362.5 378 49.2
THA.LOC104823995 Tarenaya hassleriana HOM05D003555 ORTHO05D004542 4.1e-98 362.5 379 48.3
Migut.D01225 Erythranthe guttata HOM05D003555 ORTHO05D004542 5.4e-98 362.1 378 48.9
FvH4_6g54180 Fragaria vesca HOM05D003555 ORTHO05D004542 7.0e-98 361.7 378 49.5
GSVIVG01008626001 Vitis vinifera HOM05D003555 ORTHO05D004542 7.0e-98 361.7 377 49.3
GSVIVG01033006001 Vitis vinifera HOM05D003555 ORTHO05D004542 9.2e-98 361.3 377 49.9
CDE05G2896 Ceratophyllum demersum HOM05D003555 ORTHO05D004542 1.2e-97 360.9 375 48.3
Gohir.D11G067700 Gossypium hirsutum HOM05D003555 ORTHO05D004542 1.2e-97 360.9 376 48.1
MD17G1008500 Malus domestica HOM05D003555 ORTHO05D004542 1.2e-97 360.9 378 49.5
SalBow1G4818 Salvia bowleyana HOM05D003555 ORTHO05D004542 1.2e-97 360.9 378 48.9
Ah.13g068520 Amaranthus hybridus HOM05D003555 ORTHO05D004542 1.6e-97 360.5 377 49.6
ClCG01G008140 Citrullus lanatus HOM05D003555 ORTHO05D004542 1.6e-97 360.5 379 48.8
Peaxi162Scf00171g01130 Petunia axillaris HOM05D003555 ORTHO05D004542 1.6e-97 360.5 378 49.5
BolC8t52247H Brassica oleracea HOM05D003555 ORTHO05D004542 2.7e-97 359.8 373 50.4
Hund11754 Selenicereus undatus HOM05D003555 ORTHO05D004542 2.7e-97 359.8 377 48.0
TPR.G17457 Trifolium pratense HOM05D003555 ORTHO05D004542 2.7e-97 359.8 376 49.7
Gohir.A11G063400 Gossypium hirsutum HOM05D003555 ORTHO05D004542 3.5e-97 359.4 376 47.3
Gohir.D04G073600 Gossypium hirsutum HOM05D003555 ORTHO05D004542 4.6e-97 359.0 377 48.8
Sopen03g028540 Solanum pennellii HOM05D003555 ORTHO05D004542 4.6e-97 359.0 378 48.9
vmacro19161 Vaccinium macrocarpon HOM05D003555 ORTHO05D004542 4.6e-97 359.0 376 48.4
Sed0000891 Sechium edule HOM05D003555 ORTHO05D004542 5.9e-97 358.6 379 49.3
Ah.07g207280 Amaranthus hybridus HOM05D003555 ORTHO05D004542 7.8e-97 358.2 377 49.3
MSTRG.22881 Avicennia marina HOM05D003555 ORTHO05D004542 7.8e-97 358.2 378 47.6
CSS0044185 Camellia sinensis var. sinensis HOM05D003555 ORTHO05D004542 7.8e-97 358.2 376 48.4
MSTRG.11256 Avicennia marina HOM05D003555 ORTHO05D004542 1.0e-96 357.8 378 47.9
CSS0013918 Camellia sinensis var. sinensis HOM05D003555 ORTHO05D004542 1.0e-96 357.8 376 48.1
Cc05_g01690 Coffea canephora HOM05D003555 ORTHO05D004542 1.3e-96 357.5 378 48.1
Lsat_1_v5_gn_4_84140 Lactuca sativa HOM05D003555 ORTHO05D004542 1.3e-96 357.5 376 48.1
TAR629G2425 Trochodendron aralioides HOM05D003555 ORTHO05D004542 1.3e-96 357.5 378 48.1
AUR62015995 Chenopodium quinoa HOM05D003555 ORTHO05D004542 1.7e-96 357.1 377 49.9
FAN09G3428 Fragaria x ananassa HOM05D003555 ORTHO05D004542 1.7e-96 357.1 378 49.2
ATR0582G027 Amborella trichopoda HOM05D003555 ORTHO05D004542 2.3e-96 356.7 376 47.3
EL10Ac3g05664 Beta vulgaris HOM05D003555 ORTHO05D004542 2.3e-96 356.7 378 48.1
Actinidia36835 Actinidia chinensis HOM05D003555 ORTHO05D004542 3.0e-96 356.3 376 48.1
Gorai.012G082900 Gossypium raimondii HOM05D003555 ORTHO05D004542 3.9e-96 355.9 377 47.7
TAR374G1733 Trochodendron aralioides HOM05D003555 ORTHO05D004542 3.9e-96 355.9 376 47.6
Potri.001G322500 Populus trichocarpa HOM05D003555 ORTHO05D004542 5.0e-96 355.5 378 47.6
DCAR_021412 Daucus carota HOM05D003555 ORTHO05D004542 6.6e-96 355.1 378 48.4
Sed0008328 Sechium edule HOM05D003555 ORTHO05D004542 6.6e-96 355.1 378 49.2
Oeu058121.1 Olea europaea HOM05D003555 ORTHO05D004542 1.1e-95 354.4 380 48.9
Potri.017G061100 Populus trichocarpa HOM05D003555 ORTHO05D004542 1.9e-95 353.6 378 47.4
Gohir.A05G334700 Gossypium hirsutum HOM05D003555 ORTHO05D004542 2.5e-95 353.2 379 47.8
Medtr7g083720 Medicago truncatula HOM05D003555 ORTHO05D004542 2.5e-95 353.2 387 48.3
TAR622G0101 Trochodendron aralioides HOM05D003555 ORTHO05D004542 9.5e-95 351.3 378 48.1
DCAR_016355 Daucus carota HOM05D003555 ORTHO05D004542 1.6e-94 350.5 377 48.0
Duzib147G0304 Durio zibethinus HOM05D003555 ORTHO05D004542 2.8e-94 349.7 377 46.9
unitig_61.g26203 Utricularia gibba HOM05D003555 ORTHO05D004542 2.8e-94 349.7 378 47.6
FAN02G1454 Fragaria x ananassa HOM05D003555 ORTHO05D004542 1.5e-92 344.0 378 48.1
Aa31LG1G1920 Aethionema arabicum HOM05D003555 ORTHO05D004542 3.4e-92 342.8 407 44.2
MBI07_g40357_MAGBIO Magnolia biondii HOM05D003555 ORTHO05D004542 3.4e-92 342.8 376 47.6
FAN14G0379 Fragaria x ananassa HOM05D003555 ORTHO05D004542 4.4e-92 342.4 378 47.9
VMungo1383G1114 Vigna mungo HOM05D003555 ORTHO05D004542 4.4e-92 342.4 364 48.1
FAN05G2121 Fragaria x ananassa HOM05D003555 ORTHO05D004542 1.3e-91 340.9 376 47.9
Psat0s1497g0040 Pisum sativum HOM05D003555 ORTHO05D004542 1.3e-91 340.9 338 51.5
Actinidia18318 Actinidia chinensis HOM05D003555 ORTHO05D004542 6.4e-91 338.6 329 50.8
Nn5g27103 Nelumbo nucifera HOM05D003555 ORTHO05D004542 1.4e-90 337.4 343 49.3
Zm00001eb163710 Zea mays HOM05D003555 ORTHO05D004542 1.9e-90 337.0 378 48.1
Manes.11G078200 Manihot esculenta HOM05D003555 ORTHO05D004542 3.2e-90 336.3 344 49.7
Haze_14935 Corylus avellana HOM05D003555 ORTHO05D004542 1.2e-89 334.3 437 42.8
Hund04735 Selenicereus undatus HOM05D003555 ORTHO05D004542 1.2e-89 334.3 407 43.7
COL.COLO4_13344 Corchorus olitorius HOM05D003555 ORTHO05D004542 3.0e-88 329.7 341 48.1
Actinidia25536 Actinidia chinensis HOM05D003555 ORTHO05D004542 1.9e-87 327.0 315 50.2
AagrBONN_evm.TU.Sc2ySwM_228.2553 Anthoceros agrestis HOM05D003555 ORTHO05D004542 1.9e-87 327.0 363 46.6
SGA_v2.0_scaffold14G07035 Striga asiatica HOM05D003555 ORTHO05D004542 1.9e-87 327.0 379 45.6
Sc13g0008590 Simmondsia chinensis HOM05D003555 ORTHO05D004542 3.3e-87 326.2 337 48.1
Lsat_1_v5_gn_4_84120 Lactuca sativa HOM05D003555 ORTHO05D004542 9.5e-87 324.7 376 44.9
Sc25g0000460 Simmondsia chinensis HOM05D003555 ORTHO05D004542 3.6e-86 322.8 341 48.7
Sabra16G0204700 Salix brachista HOM05D003555 ORTHO05D004542 4.7e-86 322.4 411 42.6
Rhsim08G0195300 Rhododendron simsii HOM05D003555 ORTHO05D004542 8.1e-86 321.6 460 39.6
Nn3g16313 Nelumbo nucifera HOM05D003555 ORTHO05D004542 1.5e-84 317.4 377 44.3
Zm00001eb297260 Zea mays HOM05D003555 ORTHO05D004542 2.6e-84 316.6 321 50.2
CDE05G1333 Ceratophyllum demersum HOM05D003555 ORTHO05D004542 9.2e-82 308.1 375 42.7
ECA246G0182 Erigeron canadensis HOM05D003555 ORTHO05D004542 6.0e-81 305.4 315 47.9
Ca_08125_v3 Cicer arietinum L. HOM05D003555 ORTHO05D004542 3.9e-80 302.8 379 44.6
Cre06.g250250 Chlamydomonas reinhardtii HOM05D003555 ORTHO05D004542 2.6e-76 290.0 360 42.8
Hma1.2p1_1187F.1_g265130 Hydrangea macrophylla HOM05D003555 ORTHO05D004542 9.2e-74 281.6 289 48.4
Cpa.g.sc70.83 Carica papaya HOM05D003555 ORTHO05D004542 1.6e-73 280.8 287 49.8
Lj9A484G61 Lonicera japonica HOM05D003555 ORTHO05D004542 4.6e-73 279.3 343 42.6
MCO15G152 Micromonas commoda HOM05D003555 ORTHO05D004542 1.1e-71 274.6 389 39.8
Sabra17G0054300 Salix brachista HOM05D003555 ORTHO05D004542 1.9e-71 273.9 327 44.3
Nitab4.5_0007858g0030 Nicotiana tabacum HOM05D003555 ORTHO05D004542 5.6e-71 272.3 379 41.7
Lsat_1_v5_gn_6_50360 Lactuca sativa HOM05D003555 ORTHO05D004542 2.4e-69 266.9 288 47.6
HPP92_022913 Vanilla planifolia HOM05D003555 ORTHO05D004542 7.6e-68 261.9 287 45.3
CBR_g724 Chara braunii HOM05D003555 ORTHO05D004542 1.9e-66 257.3 279 45.2
QL02p069938 Quercus lobata HOM05D003555 ORTHO05D004542 2.7e-65 253.4 378 39.2
Gorai.007G072500 Gossypium raimondii HOM05D003555 ORTHO05D004542 3.5e-65 253.1 371 39.6
PRCOL_00003348 Prasinoderma coloniale HOM05D003555 ORTHO05D004542 2.3e-64 250.4 379 40.1
HanXRQChr09g0273581 Helianthus annuus HOM05D003555 ORTHO05D004542 3.5e-57 226.5 308 40.3
AUR62021202 Chenopodium quinoa HOM05D003555 ORTHO05D004542 1.5e-55 221.1 269 45.0
Actinidia08900 Actinidia chinensis HOM05D003555 ORTHO05D004542 1.6e-54 217.6 376 36.2
CSS0036109 Camellia sinensis var. sinensis HOM05D003555 ORTHO05D004542 1.6e-54 217.6 333 39.6
Eucgr.G01949 Eucalyptus grandis HOM05D003555 ORTHO05D004542 2.8e-54 216.9 209 53.6
Nitab4.5_0005207g0040 Nicotiana tabacum HOM05D003555 ORTHO05D004542 5.3e-53 212.6 207 53.1
Lsat_1_v5_gn_5_10760 Lactuca sativa HOM05D003555 ORTHO05D004542 4.2e-50 203.0 275 41.1
Haze_27306 Corylus avellana HOM05D003555 ORTHO05D163602 1.1e-42 178.3 295 36.3
Oeu058117.1 Olea europaea HOM05D003555 ORTHO05D004542 2.7e-41 173.7 304 38.5
Cfa026601 Carpinus fangiana HOM05D003555 ORTHO05D123537 8.2e-38 162.2 385 30.4
FAN09G3010 Fragaria x ananassa HOM05D003555 ORTHO05D004542 3.4e-28 130.2 189 40.2
THA.LOC104805959 Tarenaya hassleriana HOM05D003555 ORTHO05D022543 4.2e-26 123.2 140 44.3
Hma1.2p1_0403F.1_g145240 Hydrangea macrophylla HOM05D003555 ORTHO05D004542 6.9e-21 105.9 136 42.6
Eucgr.G01948 Eucalyptus grandis HOM05D003555 ORTHO05D022543 6.1e-17 92.8 67 59.7
BcaB01g02330 Brassica carinata HOM05D003555 ORTHO05D002990 8.8e-16 89.0 183 36.6
Nitab4.5_0005207g0030 Nicotiana tabacum HOM05D003555 ORTHO05D022543 8.8e-16 89.0 84 51.2
VMungo0331G0161 Vigna mungo HOM05D003555 ORTHO05D004542 3.5e-12 77.0 68 54.4
RcHm_v2.0_Chr5g0048981 Rosa chinensis HOM05D003555 ORTHO05D004542 1.1e-10 72.0 123 38.2
VMungo0464G1180 Vigna mungo HOM05D003555 ORTHO05D004542 9.4e-10 68.9 67 49.3
Glyma.01G064050 Glycine max HOM05D003555 ORTHO05D022543 2.1e-09 67.8 47 55.3
BcaC02g12651 Brassica carinata HOM05D003555 ORTHO05D095367 1.0e-08 65.5 178 31.5
MBI07_g36274_MAGBIO Magnolia biondii HOM05D003555 ORTHO05D022543 1.8e-08 64.7 84 42.9
Oeu042080.1 Olea europaea HOM05D003555 ORTHO05D022543 7.5e-07 59.3 42 61.9


User provided reference genes

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