Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1940.6 958 100.0
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1620.5 958 83.9
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1281.5 848 76.2
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1202.6 851 72.4
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1187.6 817 72.8
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1186.8 821 71.9
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1181.0 817 72.5
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1180.2 826 72.6
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1170.2 828 72.1
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1170.2 822 71.7
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1168.7 835 71.3
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1168.3 817 72.0
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1168.3 827 71.3
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1165.2 826 71.5
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1163.3 827 71.1
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1162.9 828 71.6
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1162.1 818 71.3
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1159.4 819 71.6
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1159.1 818 71.4
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1159.1 818 71.4
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1159.1 821 71.1
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1156.4 827 70.7
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1154.8 828 71.3
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1154.8 827 70.7
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1152.9 803 72.5
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1151.7 815 71.7
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1151.0 828 70.9
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1151.0 828 70.9
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1150.6 825 71.2
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1150.2 828 70.9
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1149.8 813 71.3
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1149.8 828 70.5
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1149.4 818 71.0
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1149.0 829 70.8
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1148.7 828 70.5
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1147.9 825 71.2
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1147.1 826 70.8
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1144.8 813 71.8
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1144.8 791 73.6
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1144.0 813 71.1
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1143.6 816 71.1
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1143.3 815 70.4
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1142.9 819 71.4
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1142.9 825 70.7
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1142.9 810 71.6
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1141.3 795 73.0
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1140.9 824 70.4
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1140.9 818 70.8
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1140.6 817 69.8
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1140.6 814 70.6
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1139.8 810 70.4
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1139.8 806 71.7
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1137.9 818 70.9
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1137.1 828 69.7
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1136.7 818 70.2
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1136.7 818 70.8
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1135.9 827 69.9
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1135.6 817 70.6
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1135.2 806 70.3
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1133.2 826 69.2
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1131.3 826 70.5
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1130.2 824 69.9
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1130.2 818 70.3
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1129.8 817 70.5
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1129.8 813 70.6
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1129.4 811 70.4
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1129.4 832 69.7
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1129.4 825 70.3
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1129.4 823 70.1
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1128.2 825 69.8
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1124.8 816 70.6
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1124.8 821 70.4
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1124.4 817 69.9
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1124.0 810 70.1
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1124.0 836 68.7
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1123.2 814 69.8
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1122.1 816 70.2
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1121.7 805 70.7
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1121.7 819 69.7
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1121.7 826 69.4
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1119.8 825 69.0
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1119.0 817 70.0
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1119.0 817 70.0
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1119.0 817 70.0
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1119.0 853 67.9
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1119.0 814 69.8
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1117.8 816 69.9
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1117.8 818 69.8
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1117.8 818 70.2
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1117.4 875 66.9
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1117.1 853 63.8
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1116.7 817 70.4
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1116.7 817 70.4
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1116.3 801 70.7
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1116.3 807 70.8
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1115.9 814 69.7
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1115.5 808 69.9
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1114.8 808 69.7
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1114.8 808 69.7
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1114.8 808 69.7
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1114.8 808 69.7
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1114.4 849 67.7
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1114.0 801 70.9
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1112.4 792 72.2
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1111.7 816 69.5
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1110.9 811 70.7
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1110.1 837 68.6
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1108.6 820 69.5
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1106.3 826 68.9
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1102.0 787 71.2
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1101.3 813 68.5
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1101.3 819 68.7
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1098.6 806 69.7
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1095.5 823 69.0
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1094.3 853 67.1
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1094.0 832 68.6
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1090.5 807 69.4
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1090.5 815 67.9
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1088.2 819 68.4
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1087.8 806 70.1
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1087.4 812 69.1
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1086.2 829 67.2
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 3.2e-309 1065.1 692 76.3
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 4.2e-309 1064.7 832 66.8
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 7.2e-309 1063.9 874 63.5
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 6.1e-308 1060.8 791 68.3
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 1.0e-307 1060.1 827 66.4
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 1.7e-305 1052.7 813 67.8
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 1.7e-305 1052.7 819 63.4
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 1.4e-304 1049.7 761 69.9
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 1.8e-304 1049.3 757 70.0
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 1.0e-302 1043.5 804 67.5
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 1.4e-301 1039.6 859 64.5
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 4.2e-301 1038.1 808 65.6
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 9.4e-301 1036.9 733 72.6
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 1.6e-300 1036.2 818 65.9
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 5.1e-299 1031.2 860 63.5
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 2.8e-297 1025.4 877 62.3
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 5.5e-293 1011.1 814 66.3
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 2.6e-287 992.3 642 72.4
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 8.0e-284 980.7 732 69.3
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 5.3e-280 968.0 757 63.7
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 8.6e-262 907.5 811 61.3
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 3.1e-243 845.9 575 69.6
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.0e-235 818.9 820 55.5
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 3.5e-223 779.2 548 68.8
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 2.1e-220 770.0 516 71.9
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 7.6e-218 761.5 547 72.0
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.4e-147 527.3 708 44.9
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 2.5e-136 490.7 466 54.9
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 3.4e-117 427.2 343 70.0
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 9.6e-112 409.1 313 63.6
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 7.9e-98 362.8 317 65.9
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 5.5e-91 340.1 397 49.6
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.0e-89 335.9 580 44.0
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 6.5e-84 316.6 264 60.6
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.6e-64 251.5 155 81.3
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 1.6e-42 179.1 132 65.2
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 9.8e-40 169.9 157 55.4
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 1.6e-34 152.5 478 28.7
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 3.6e-34 151.4 474 28.5
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 9.8e-32 143.3 473 27.5
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.2e-26 126.3 470 27.0
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 1.8e-25 122.5 76 75.0
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 4.0e-25 121.3 449 26.9
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 6.8e-25 120.6 96 64.6
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 4.1e-22 111.3 62 82.3
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-16 93.2 217 30.9
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-15 89.4 217 29.0
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 1.7e-15 89.4 61 68.9
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.1e-13 82.4 106 36.8
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 1.6e-10 72.8 135 33.3
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 8.1e-10 70.5 102 42.2
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 1.5e-08 66.2 120 33.3
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 1.3e-07 63.2 80 42.5


User provided reference genes

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