Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.7e-79 299.3 148 100.0
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 5.2e-49 198.0 106 92.5
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.8e-47 192.2 106 90.6
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 2.5e-43 179.1 106 82.1
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 3.3e-43 178.7 106 84.9
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 5.2e-41 171.4 106 78.3
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 5.2e-41 171.4 106 79.2
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 1.2e-40 170.2 106 77.4
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 3.4e-40 168.7 106 78.3
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 3.4e-40 168.7 106 78.3
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 4.4e-40 168.3 106 77.4
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 5.7e-40 167.9 106 78.3
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 7.5e-40 167.5 106 76.4
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 9.8e-40 167.2 106 77.4
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 9.8e-40 167.2 106 77.4
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 1.3e-39 166.8 106 77.4
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.3e-39 166.8 106 77.4
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 1.7e-39 166.4 106 77.4
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 1.7e-39 166.4 106 77.4
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.7e-39 166.4 106 77.4
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.8e-39 165.6 106 77.4
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 3.7e-39 165.2 106 76.4
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 4.9e-39 164.9 106 76.4
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 4.9e-39 164.9 106 76.4
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 4.9e-39 164.9 106 77.4
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.9e-39 164.9 106 77.4
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 4.9e-39 164.9 113 72.6
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 6.3e-39 164.5 106 76.4
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 6.3e-39 164.5 106 76.4
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 8.3e-39 164.1 106 75.5
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 8.3e-39 164.1 106 76.4
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 8.3e-39 164.1 106 75.5
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 8.3e-39 164.1 106 74.5
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 1.1e-38 163.7 106 76.4
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 1.1e-38 163.7 106 75.5
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 1.1e-38 163.7 106 76.4
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 1.1e-38 163.7 106 76.4
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 1.1e-38 163.7 106 76.4
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 1.1e-38 163.7 106 76.4
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.4e-38 163.3 106 76.4
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 1.4e-38 163.3 106 76.4
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 1.4e-38 163.3 106 75.5
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 1.4e-38 163.3 106 73.6
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 1.8e-38 162.9 106 74.5
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 1.8e-38 162.9 106 74.5
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 1.8e-38 162.9 106 74.5
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 1.8e-38 162.9 106 75.5
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 1.8e-38 162.9 106 76.4
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 1.8e-38 162.9 106 75.5
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 2.4e-38 162.5 106 74.5
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 2.4e-38 162.5 106 74.5
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.4e-38 162.5 113 73.5
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 2.4e-38 162.5 106 75.5
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 2.4e-38 162.5 106 74.5
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 2.4e-38 162.5 106 75.5
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 2.4e-38 162.5 106 76.4
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 3.1e-38 162.2 106 75.5
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 3.1e-38 162.2 106 75.5
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.1e-38 162.2 106 75.5
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.1e-38 162.2 106 75.5
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 3.1e-38 162.2 106 75.5
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 3.1e-38 162.2 106 75.5
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 3.1e-38 162.2 106 75.5
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 3.1e-38 162.2 113 72.6
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 3.1e-38 162.2 106 74.5
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 3.1e-38 162.2 106 75.5
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 3.1e-38 162.2 106 75.5
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 4.1e-38 161.8 106 74.5
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 4.1e-38 161.8 106 73.6
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 4.1e-38 161.8 106 74.5
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 4.1e-38 161.8 106 73.6
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 4.1e-38 161.8 106 73.6
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 4.1e-38 161.8 106 74.5
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 4.1e-38 161.8 106 74.5
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 4.1e-38 161.8 106 74.5
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 4.1e-38 161.8 106 74.5
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 5.4e-38 161.4 106 73.6
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 5.4e-38 161.4 106 73.6
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 5.4e-38 161.4 113 70.8
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 5.4e-38 161.4 106 74.5
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 5.4e-38 161.4 106 74.5
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 5.4e-38 161.4 106 74.5
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 5.4e-38 161.4 106 75.5
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 5.4e-38 161.4 106 74.5
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 5.4e-38 161.4 106 72.6
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 7.0e-38 161.0 106 74.5
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 7.0e-38 161.0 106 74.5
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 7.0e-38 161.0 106 74.5
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 7.0e-38 161.0 106 74.5
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 9.2e-38 160.6 106 73.6
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 9.2e-38 160.6 106 73.6
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 9.2e-38 160.6 106 73.6
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 9.2e-38 160.6 113 71.7
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 9.2e-38 160.6 111 72.1
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 1.2e-37 160.2 106 72.6
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 1.2e-37 160.2 106 72.6
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 1.2e-37 160.2 106 74.5
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 1.6e-37 159.8 106 73.6
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 1.6e-37 159.8 106 73.6
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 2.0e-37 159.5 106 72.6
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 3.5e-37 158.7 106 72.6
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 3.5e-37 158.7 106 74.5
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 3.5e-37 158.7 106 74.5
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 4.5e-37 158.3 113 70.8
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 4.5e-37 158.3 106 72.6
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 4.5e-37 158.3 106 73.6
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 4.5e-37 158.3 106 73.6
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 4.5e-37 158.3 106 73.6
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 4.5e-37 158.3 106 73.6
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 5.9e-37 157.9 106 72.6
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 5.9e-37 157.9 106 70.8
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 7.8e-37 157.5 106 73.6
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 7.8e-37 157.5 113 69.0
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 7.8e-37 157.5 106 73.6
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 7.8e-37 157.5 106 73.6
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 7.8e-37 157.5 106 73.6
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 7.8e-37 157.5 106 73.6
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 7.8e-37 157.5 106 73.6
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 1.0e-36 157.1 106 72.6
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.7e-36 156.4 106 72.6
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.7e-36 156.4 106 72.6
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 2.3e-36 156.0 106 72.6
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 5.0e-36 154.8 118 69.5
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 1.1e-35 153.7 124 63.7
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 1.1e-35 153.7 97 75.3
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 5.6e-35 151.4 106 68.9
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 6.8e-33 144.4 105 66.7
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 1.3e-31 140.2 106 67.0
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 3.2e-30 135.6 81 79.0
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.6e-29 133.3 105 65.7
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 2.0e-29 132.9 97 67.0
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 4.6e-29 131.7 105 61.9
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 1.0e-28 130.6 106 63.2
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 3.0e-28 129.0 106 61.3
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 3.9e-28 128.6 106 63.2
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 8.6e-28 127.5 106 61.3
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 8.6e-28 127.5 106 61.3
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 1.5e-27 126.7 106 61.3
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 1.5e-27 126.7 106 61.3
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 1.5e-27 126.7 107 62.6
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 4.3e-27 125.2 106 60.4
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 1.6e-26 123.2 106 60.4
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 1.6e-26 123.2 106 61.3
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 4.7e-26 121.7 106 54.7
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 6.2e-26 121.3 143 51.0
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 6.2e-26 121.3 106 59.4
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 1.1e-25 120.6 106 56.6
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 2.3e-25 119.4 97 63.9
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 6.8e-25 117.9 106 58.5
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 8.9e-25 117.5 106 58.5
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.4e-22 109.4 106 58.5
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 2.7e-21 105.9 70 70.0
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 2.7e-21 105.9 70 70.0
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 7.8e-21 104.4 67 74.6
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 2.1e-18 96.3 54 85.2
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 7.3e-11 71.2 106 42.5
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 1.2e-10 70.5 56 64.3
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.2e-10 70.5 46 73.9
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 3.6e-10 68.9 42 78.6
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 6.8e-09 64.7 50 66.0
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.3e-07 60.5 42 71.4


User provided reference genes

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