Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 0.0e+00 1075.8 531 100.0
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 5.1e-123 445.7 592 43.1
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 1.1e-117 427.9 544 44.3
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 3.4e-111 406.4 536 41.0
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 2.6e-106 390.2 287 63.8
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 2.0e-103 380.6 537 42.3
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 2.6e-103 380.2 536 43.1
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 4.5e-103 379.4 538 42.9
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.2e-101 373.2 416 46.6
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 3.2e-101 373.2 542 40.4
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 2.1e-100 370.5 536 41.4
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 6.1e-100 369.0 540 40.6
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 7.9e-100 368.6 544 40.4
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 1.0e-99 368.2 536 41.6
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 1.4e-99 367.9 543 41.3
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 1.8e-99 367.5 537 40.8
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.8e-99 367.5 540 41.5
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 3.0e-99 366.7 539 42.3
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 3.0e-99 366.7 544 40.4
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 3.9e-99 366.3 539 41.6
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 5.2e-99 365.9 537 41.2
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 5.2e-99 365.9 536 39.4
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 6.7e-99 365.5 535 41.5
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 8.8e-99 365.2 537 39.9
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 1.5e-98 364.4 542 41.5
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 1.5e-98 364.4 536 40.3
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 1.5e-98 364.4 537 41.0
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.0e-98 364.0 544 41.5
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 4.4e-98 362.8 539 41.7
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 7.4e-98 362.1 539 41.0
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 7.4e-98 362.1 537 40.2
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 1.3e-97 361.3 541 41.2
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 2.8e-97 360.1 537 39.9
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 3.7e-97 359.8 539 41.0
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 4.8e-97 359.4 532 40.2
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 1.1e-96 358.2 537 40.0
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.8e-96 357.5 537 40.8
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.8e-96 357.5 537 40.8
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 3.1e-96 356.7 545 40.2
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.3e-96 355.9 536 39.6
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 9.1e-96 355.1 542 39.9
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.6e-95 354.4 547 40.2
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 1.6e-95 354.4 546 40.5
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 1.6e-95 354.4 536 41.0
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.6e-95 354.4 536 39.9
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 1.6e-95 354.4 537 39.9
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 2.6e-95 353.6 540 39.6
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 2.6e-95 353.6 418 45.5
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 3.5e-95 353.2 546 40.7
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 7.7e-95 352.1 416 44.7
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 1.0e-94 351.7 538 39.8
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 1.3e-94 351.3 544 40.3
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 1.7e-94 350.9 416 45.4
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 2.2e-94 350.5 572 37.4
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 2.2e-94 350.5 540 39.1
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 2.9e-94 350.1 546 38.8
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 2.9e-94 350.1 542 39.5
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 3.8e-94 349.7 564 39.5
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 1.5e-93 347.8 416 44.0
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 1.5e-93 347.8 542 39.9
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 1.9e-93 347.4 540 38.1
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.5e-93 347.1 561 39.0
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 9.4e-93 345.1 537 39.3
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 1.6e-92 344.4 542 40.2
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 2.1e-92 344.0 539 39.7
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 4.7e-92 342.8 419 44.2
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.0e-91 341.7 561 39.8
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 1.0e-91 341.7 534 38.6
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 2.3e-91 340.5 546 37.5
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 2.3e-91 340.5 325 51.7
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 2.3e-91 340.5 530 39.1
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 2.3e-91 340.5 284 56.3
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 4.0e-91 339.7 537 39.1
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 8.8e-91 338.6 544 40.6
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 1.5e-90 337.8 555 38.2
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 2.6e-90 337.0 531 37.7
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 4.4e-90 336.3 611 36.0
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 5.7e-90 335.9 418 45.0
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 5.7e-90 335.9 576 38.4
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 9.7e-90 335.1 544 39.0
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 1.7e-89 334.3 539 39.7
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 2.8e-89 333.6 542 40.6
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 3.7e-89 333.2 284 54.2
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 3.7e-89 333.2 540 39.1
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 4.8e-89 332.8 555 38.2
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 6.3e-89 332.4 542 40.2
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 8.2e-89 332.0 284 56.0
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 4.1e-88 329.7 559 37.9
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 4.1e-88 329.7 534 39.1
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 9.1e-88 328.6 553 36.9
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 9.1e-88 328.6 507 38.7
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.6e-87 327.8 413 44.8
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 1.6e-87 327.8 312 51.3
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 2.7e-87 327.0 553 37.1
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 4.5e-87 326.2 418 43.8
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 1.0e-86 325.1 565 37.7
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 1.3e-86 324.7 327 51.7
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 1.7e-86 324.3 418 45.2
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 2.9e-86 323.6 493 39.6
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 6.5e-86 322.4 540 38.1
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 6.5e-86 322.4 494 39.1
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 2.5e-85 320.5 416 43.0
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 7.2e-85 318.9 307 51.1
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 9.4e-85 318.5 283 53.7
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 9.4e-85 318.5 283 53.7
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 9.4e-85 318.5 416 42.8
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 9.4e-85 318.5 416 41.6
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 1.6e-84 317.8 298 51.7
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 2.1e-84 317.4 283 53.7
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 2.1e-84 317.4 283 53.7
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 3.6e-84 316.6 498 39.2
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 8.0e-84 315.5 284 53.2
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 8.0e-84 315.5 557 37.2
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 1.0e-83 315.1 493 38.7
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 1.4e-83 314.7 463 40.0
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 1.8e-83 314.3 284 52.5
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.2e-82 311.6 284 52.1
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 2.0e-82 310.8 419 41.8
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 2.2e-81 307.4 288 49.0
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 6.3e-81 305.8 310 50.3
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.0e-78 298.5 453 40.0
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.3e-78 298.1 541 37.5
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.2e-78 297.4 546 35.2
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 2.2e-78 297.4 525 33.9
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 2.9e-78 297.0 297 48.1
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 3.8e-78 296.6 537 36.9
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.5e-77 294.7 541 37.2
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.2e-76 291.6 466 39.7
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 2.8e-76 290.4 283 48.1
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 3.6e-76 290.0 539 36.7
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 3.6e-76 290.0 451 39.7
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 1.2e-74 285.0 467 38.1
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.5e-74 284.6 452 39.8
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 2.6e-74 283.9 440 39.1
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 4.9e-73 279.6 337 44.2
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 6.6e-70 269.2 498 36.3
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 3.3e-69 266.9 525 35.4
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 2.3e-67 260.8 417 38.8
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 9.8e-66 255.4 498 35.9
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 1.6e-63 248.1 496 34.3
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.4e-56 224.9 459 34.6
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 5.4e-56 223.0 289 43.3
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.9e-40 171.4 365 35.3
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 3.8e-33 147.1 208 38.5
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.0e-22 112.5 187 35.3
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 9.6e-21 105.9 367 29.4
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 2.8e-20 104.4 143 37.8
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 2.8e-20 104.4 143 37.8
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.8e-20 103.6 102 48.0
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.1e-19 102.4 99 48.5
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.3e-19 100.1 102 47.1
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 3.4e-18 97.4 121 40.5
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 3.5e-15 87.4 88 50.0
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 3.5e-15 87.4 88 50.0


User provided reference genes

Program Settings