Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_7850 Physcomitrium patens HOM05D006663 ORTHO05D008269 0.0e+00 1178.7 571 100.0
Pp3c3_11450 Physcomitrium patens HOM05D006663 ORTHO05D008269 2.8e-204 715.7 466 70.4
Pp3c13_8720 Physcomitrium patens HOM05D006663 ORTHO05D008269 9.2e-203 710.7 467 69.8
SEGI_30026 Sequoiadendron giganteum HOM05D006663 ORTHO05D008269 5.0e-201 704.9 467 69.2
SMO340G0268 Selaginella moellendorffii HOM05D006663 ORTHO05D008269 3.7e-196 688.7 462 71.2
Mapoly0178s0015 Marchantia polymorpha HOM05D006663 ORTHO05D008269 2.1e-191 672.9 465 69.2
Os10g0563300 Oryza sativa ssp. japonica HOM05D006663 ORTHO05D008269 4.4e-189 665.2 469 65.5
ClCG01G004680 Citrullus lanatus HOM05D006663 ORTHO05D008269 3.7e-188 662.1 457 65.6
CsaV3_5G004880 Cucumis sativus L. HOM05D006663 ORTHO05D008269 6.4e-188 661.4 456 65.4
Lalb_Chr02g0150831 Lupinus albus HOM05D006663 ORTHO05D008269 4.1e-187 658.7 456 65.6
GSVIVG01013975001 Vitis vinifera HOM05D006663 ORTHO05D008269 4.1e-187 658.7 456 66.4
MELO3C005467.2 Cucumis melo HOM05D006663 ORTHO05D008269 1.2e-186 657.1 456 64.9
CiPaw.07G185300 Carya illinoinensis HOM05D006663 ORTHO05D008269 2.1e-186 656.4 456 64.9
TAR636G2266 Trochodendron aralioides HOM05D006663 ORTHO05D008269 6.0e-186 654.8 463 63.7
Sed0007931 Sechium edule HOM05D006663 ORTHO05D008269 2.3e-185 652.9 456 64.7
Actinidia13608 Actinidia chinensis HOM05D006663 ORTHO05D008269 1.5e-184 650.2 458 65.3
Psat0s1505g0040 Pisum sativum HOM05D006663 ORTHO05D008269 1.5e-184 650.2 456 64.0
Aqoxy7G00844 Aquilegia oxysepala HOM05D006663 ORTHO05D008269 1.9e-184 649.8 463 64.1
TWI39G0071 Tripterygium wilfordii HOM05D006663 ORTHO05D008269 1.9e-184 649.8 456 65.6
Glyma.20G195600 Glycine max HOM05D006663 ORTHO05D008269 3.3e-184 649.0 456 64.3
Hma1.2p1_1580F.1_g291900 Hydrangea macrophylla HOM05D006663 ORTHO05D008269 3.3e-184 649.0 456 64.3
QL09p027994 Quercus lobata HOM05D006663 ORTHO05D008269 3.3e-184 649.0 468 63.2
ATR0057G058 Amborella trichopoda HOM05D006663 ORTHO05D008269 4.3e-184 648.7 469 62.9
arahy.Tifrunner.gnm1.ann1.JS0B2B Arachis hypogaea HOM05D006663 ORTHO05D008269 4.3e-184 648.7 456 64.3
Phvul.007G136100 Phaseolus vulgaris HOM05D006663 ORTHO05D008269 4.3e-184 648.7 456 64.0
Rhsim03G0161500 Rhododendron simsii HOM05D006663 ORTHO05D008269 5.6e-184 648.3 456 64.5
arahy.Tifrunner.gnm1.ann1.78X8E3 Arachis hypogaea HOM05D006663 ORTHO05D008269 2.1e-183 646.4 456 63.8
VMungo0720G2856 Vigna mungo HOM05D006663 ORTHO05D008269 2.8e-183 646.0 456 63.8
Atru.chr1.907 Acer truncatum HOM05D006663 ORTHO05D008269 4.7e-183 645.2 456 65.1
CSS0030206 Camellia sinensis var. sinensis HOM05D006663 ORTHO05D008269 4.7e-183 645.2 460 63.3
CSS0049195 Camellia sinensis var. sinensis HOM05D006663 ORTHO05D008269 4.7e-183 645.2 460 63.3
COL.COLO4_37343 Corchorus olitorius HOM05D006663 ORTHO05D008269 8.1e-183 644.4 456 64.0
Eucgr.A02922 Eucalyptus grandis HOM05D006663 ORTHO05D008269 8.1e-183 644.4 455 64.0
Oeu042534.1 Olea europaea HOM05D006663 ORTHO05D008269 8.1e-183 644.4 456 63.8
Lj5g0020638 Lotus japonicus HOM05D006663 ORTHO05D008269 1.8e-182 643.3 456 63.4
Cpa.g.sc13.257 Carica papaya HOM05D006663 ORTHO05D008269 4.0e-182 642.1 456 64.5
Migut.F00523 Erythranthe guttata HOM05D006663 ORTHO05D008269 4.0e-182 642.1 456 63.2
Thecc.03G149200 Theobroma cacao HOM05D006663 ORTHO05D008269 4.0e-182 642.1 456 64.5
MSTRG.8846 Avicennia marina HOM05D006663 ORTHO05D008269 5.2e-182 641.7 456 63.4
Gohir.A12G196700 Gossypium hirsutum HOM05D006663 ORTHO05D008269 6.8e-182 641.3 456 64.0
Medtr1g090310 Medicago truncatula HOM05D006663 ORTHO05D008269 8.9e-182 641.0 456 64.0
Gorai.008G214300 Gossypium raimondii HOM05D006663 ORTHO05D008269 1.5e-181 640.2 456 64.3
Manes.14G038500 Manihot esculenta HOM05D006663 ORTHO05D008269 2.6e-181 639.4 456 64.9
Sc10g0004730 Simmondsia chinensis HOM05D006663 ORTHO05D008269 4.4e-181 638.6 461 64.0
Sopen03g024320 Solanum pennellii HOM05D006663 ORTHO05D008269 5.8e-181 638.3 456 65.4
SGA_v2.0_scaffold60G20812 Striga asiatica HOM05D006663 ORTHO05D008269 2.2e-180 636.3 456 63.4
RcHm_v2.0_Chr1g0373701 Rosa chinensis HOM05D006663 ORTHO05D008269 3.7e-180 635.6 460 63.5
CANSAT56G2550 Cannabis sativa HOM05D006663 ORTHO05D008269 6.4e-180 634.8 456 63.8
Potri.003G151400 Populus trichocarpa HOM05D006663 ORTHO05D008269 8.3e-180 634.4 465 63.2
FvH4_7g26970 Fragaria vesca HOM05D006663 ORTHO05D008269 1.4e-179 633.6 456 63.6
PGSC0003DMG400010747 Solanum tuberosum HOM05D006663 ORTHO05D008269 1.9e-179 633.3 456 64.9
FAN06G2606 Fragaria x ananassa HOM05D006663 ORTHO05D008269 2.4e-179 632.9 456 63.4
Cc02_g04690 Coffea canephora HOM05D006663 ORTHO05D008269 4.1e-179 632.1 456 63.8
Hund24931 Selenicereus undatus HOM05D006663 ORTHO05D008269 5.4e-179 631.7 472 62.3
AL6G17900 Arabidopsis lyrata HOM05D006663 ORTHO05D008269 3.5e-178 629.0 456 65.1
FAN06G1593 Fragaria x ananassa HOM05D006663 ORTHO05D008269 3.5e-178 629.0 456 63.2
MD01G1177500 Malus domestica HOM05D006663 ORTHO05D008269 4.6e-178 628.6 457 63.5
BcaC06g32493 Brassica carinata HOM05D006663 ORTHO05D008269 6.0e-178 628.2 459 62.5
CARHR205560 Cardamine hirsuta HOM05D006663 ORTHO05D008269 6.0e-178 628.2 456 65.1
A10p29330 Brassica napus HOM05D006663 ORTHO05D008269 7.8e-178 627.9 456 62.9
C09p69700 Brassica napus HOM05D006663 ORTHO05D008269 7.8e-178 627.9 456 62.7
BolC9t59713H Brassica oleracea HOM05D006663 ORTHO05D008269 7.8e-178 627.9 456 62.7
MD07G1249200 Malus domestica HOM05D006663 ORTHO05D008269 7.8e-178 627.9 457 63.0
Sabra03G0109600 Salix brachista HOM05D006663 ORTHO05D008269 2.3e-177 626.3 481 60.7
Thhalv10013487m.g Eutrema salsugineum HOM05D006663 ORTHO05D008269 3.0e-177 625.9 456 64.7
Sabra01G0056700 Salix brachista HOM05D006663 ORTHO05D008269 3.0e-177 625.9 465 63.9
THA.LOC104801603 Tarenaya hassleriana HOM05D006663 ORTHO05D008269 3.0e-177 625.9 459 62.5
Carub.0006s0657 Capsella rubella HOM05D006663 ORTHO05D008269 3.9e-177 625.5 456 64.7
PSO675G3877 Papaver somniferum HOM05D006663 ORTHO05D008269 3.9e-177 625.5 454 62.8
AT5G07590 Arabidopsis thaliana HOM05D006663 ORTHO05D008269 5.1e-177 625.2 456 64.7
Potri.001G079100 Populus trichocarpa HOM05D006663 ORTHO05D008269 6.6e-177 624.8 457 64.6
CANSAT56G3894 Cannabis sativa HOM05D006663 ORTHO05D008269 2.5e-176 622.9 456 62.7
Lj1C976T20 Lonicera japonica HOM05D006663 ORTHO05D008269 4.3e-176 622.1 456 61.4
Lsat_1_v5_gn_8_9600 Lactuca sativa HOM05D006663 ORTHO05D008269 2.1e-175 619.8 465 60.9
EL10Ac7g15901 Beta vulgaris HOM05D006663 ORTHO05D008269 6.2e-175 618.2 456 61.6
HanXRQChr05g0138181 Helianthus annuus HOM05D006663 ORTHO05D008269 6.2e-175 618.2 456 61.8
Sp6g35280 Schrenkiella parvula HOM05D006663 ORTHO05D008269 6.2e-175 618.2 456 64.3
PSO732G0765 Papaver somniferum HOM05D006663 ORTHO05D008269 8.1e-175 617.8 448 62.7
Aa31LG3G18830 Aethionema arabicum HOM05D006663 ORTHO05D008269 1.4e-174 617.1 483 61.5
DCAR_020172 Daucus carota HOM05D006663 ORTHO05D008269 2.4e-174 616.3 464 61.6
ECA233G2092 Erigeron canadensis HOM05D006663 ORTHO05D008269 6.8e-174 614.8 468 60.0
AUR62009686 Chenopodium quinoa HOM05D006663 ORTHO05D008269 9.3e-171 604.4 456 61.8
TPR.G13385 Trifolium pratense HOM05D006663 ORTHO05D008269 8.7e-169 597.8 494 57.1
Glyma.10G194400 Glycine max HOM05D006663 ORTHO05D008269 2.1e-167 593.2 456 59.0
Ciclev10004937m.g Citrus clementina HOM05D006663 ORTHO05D008269 8.1e-167 591.3 457 61.7
Prupe.2G272800 Prunus persica HOM05D006663 ORTHO05D008269 2.7e-162 576.2 456 58.6
CBR_g49329 Chara braunii HOM05D006663 ORTHO05D008269 1.1e-160 570.9 469 58.2
Nn1g00884 Nelumbo nucifera HOM05D006663 ORTHO05D008269 3.1e-158 562.8 463 57.2
AUR62001890 Chenopodium quinoa HOM05D006663 ORTHO05D008269 1.4e-155 553.9 456 55.9
SHI14080 Sapria himalayana HOM05D006663 ORTHO05D008269 4.2e-155 552.4 495 53.1
HPP92_025692 Vanilla planifolia HOM05D006663 ORTHO05D008269 2.5e-152 543.1 395 63.0
PGR042G0458 Punica granatum HOM05D006663 ORTHO05D008269 1.1e-139 501.1 456 52.6
AagrBONN_evm.TU.Sc2ySwM_228.1080 Anthoceros agrestis HOM05D006663 ORTHO05D008269 1.8e-137 493.8 343 70.6
Ca_10369_v3 Cicer arietinum L. HOM05D006663 ORTHO05D008269 2.6e-133 479.9 347 64.8
Ca_10419_v3 Cicer arietinum L. HOM05D006663 ORTHO05D008269 2.6e-133 479.9 347 64.8
Haze_22195 Corylus avellana HOM05D006663 ORTHO05D008269 1.0e-132 478.0 352 63.1
Nitab4.5_0007080g0010 Nicotiana tabacum HOM05D006663 ORTHO05D008269 2.3e-129 466.8 342 64.3
FAN10G3253 Fragaria x ananassa HOM05D006663 ORTHO05D008269 6.7e-129 465.3 343 63.3
vmacro06835 Vaccinium macrocarpon HOM05D006663 ORTHO05D008269 1.1e-128 464.5 343 65.3
Gohir.A09G080000 Gossypium hirsutum HOM05D006663 ORTHO05D008269 1.5e-128 464.2 344 62.8
SalBow3G3051 Salvia bowleyana HOM05D006663 ORTHO05D008269 3.3e-128 463.0 342 62.9
Gohir.D09G034800 Gossypium hirsutum HOM05D006663 ORTHO05D008269 4.3e-128 462.6 344 63.1
FAN03G0477 Fragaria x ananassa HOM05D006663 ORTHO05D008269 1.1e-126 458.0 343 62.7
Dinv06596 Davidia involucrata HOM05D006663 ORTHO05D008269 3.6e-122 443.0 326 63.2
Gohir.D04G037700 Gossypium hirsutum HOM05D006663 ORTHO05D008269 2.2e-119 433.7 312 63.5
Nitab4.5_0021979g0010 Nicotiana tabacum HOM05D006663 ORTHO05D008269 1.4e-118 431.0 293 68.3
Solyc03g093490.3 Solanum lycopersicum HOM05D006663 ORTHO05D008269 2.6e-117 426.8 281 71.5
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 7.2e-115 418.7 355 59.2
Zm00001eb325360 Zea mays HOM05D006663 ORTHO05D008269 1.6e-114 417.5 278 69.8
SalBow3G2644 Salvia bowleyana HOM05D006663 ORTHO05D008269 3.6e-106 389.8 296 60.1
PRCOL_00004773 Prasinoderma coloniale HOM05D006663 ORTHO05D008269 4.4e-104 382.9 478 41.0
Gohir.D12G199100 Gossypium hirsutum HOM05D006663 ORTHO05D008269 1.4e-102 377.9 287 60.6
Cre13.g567150 Chlamydomonas reinhardtii HOM05D006663 ORTHO05D008269 1.8e-97 360.9 487 38.2
CDE09G0338 Ceratophyllum demersum HOM05D006663 ORTHO05D008269 1.1e-94 351.7 278 58.6
Solyc03g093500.3 Solanum lycopersicum HOM05D006663 ORTHO05D008269 3.1e-57 227.3 154 62.3
SHI00707 Sapria himalayana HOM05D006663 ORTHO05D008269 2.4e-38 164.5 164 50.0
Gohir.A03G137100 Gossypium hirsutum HOM05D006663 ORTHO05D008269 1.6e-37 161.8 110 66.4
Gohir.A07G166700 Gossypium hirsutum HOM05D006663 ORTHO05D008269 1.6e-37 161.8 110 66.4
Gohir.A09G003500 Gossypium hirsutum HOM05D006663 ORTHO05D008269 3.5e-37 160.6 110 65.5
Atru.chr4.2082 Acer truncatum HOM05D006663 ORTHO05D008269 1.1e-22 112.5 103 53.4


User provided reference genes

Program Settings