Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_710 Physcomitrium patens HOM05D005781 ORTHO05D006835 1.6e-76 289.3 142 100.0
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 3.7e-12 75.5 58 56.9
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 4.9e-12 75.1 57 56.1
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 6.3e-12 74.7 57 57.9
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 8.3e-12 74.3 57 54.4
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 2.4e-11 72.8 57 50.9
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 7.0e-11 71.2 57 49.1
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 7.0e-11 71.2 53 60.4
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 9.2e-11 70.9 53 54.7
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 9.2e-11 70.9 53 58.5
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 2.0e-10 69.7 54 55.6
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 2.7e-10 69.3 54 55.6
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 2.7e-10 69.3 53 56.6
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 2.7e-10 69.3 53 56.6
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 2.7e-10 69.3 54 55.6
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 2.7e-10 69.3 53 54.7
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 3.5e-10 68.9 53 56.6
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 3.5e-10 68.9 53 50.9
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 4.5e-10 68.6 48 68.8
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 4.5e-10 68.6 53 52.8
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 4.5e-10 68.6 53 52.8
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 5.9e-10 68.2 53 54.7
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 5.9e-10 68.2 53 52.8
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 7.8e-10 67.8 55 47.3
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 7.8e-10 67.8 53 52.8
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 7.8e-10 67.8 54 51.9
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 7.8e-10 67.8 73 43.8
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 1.0e-09 67.4 53 52.8
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 1.7e-09 66.6 53 52.8
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 1.7e-09 66.6 53 52.8
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 1.7e-09 66.6 54 50.0
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 2.3e-09 66.2 53 50.9
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 2.3e-09 66.2 53 52.8
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 2.9e-09 65.9 66 43.9
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 2.9e-09 65.9 53 50.9
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 2.9e-09 65.9 53 52.8
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 2.9e-09 65.9 53 52.8
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 2.9e-09 65.9 53 54.7
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 2.9e-09 65.9 53 50.9
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 2.9e-09 65.9 57 49.1
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.8e-09 65.5 53 50.9
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.8e-09 65.5 53 50.9
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 3.8e-09 65.5 53 50.9
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 3.8e-09 65.5 53 49.1
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 6.6e-09 64.7 53 52.8
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 6.6e-09 64.7 53 50.9
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 6.6e-09 64.7 55 49.1
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 1.1e-08 63.9 53 52.8
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.1e-08 63.9 53 50.9
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.1e-08 63.9 57 47.4
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 1.5e-08 63.5 67 52.2
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 1.5e-08 63.5 53 52.8
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 1.5e-08 63.5 53 50.9
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 1.9e-08 63.2 53 49.1
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 5.6e-08 61.6 55 52.7
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 7.3e-08 61.2 54 50.0
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 7.3e-08 61.2 53 47.2
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 9.5e-08 60.8 46 58.7
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 9.5e-08 60.8 46 60.9
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 1.2e-07 60.5 59 49.2
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 1.2e-07 60.5 46 58.7
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.6e-07 60.1 46 56.5
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 2.1e-07 59.7 54 50.0
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 2.1e-07 59.7 72 40.3
Mapoly0010s0158 Marchantia polymorpha HOM05D005781 ORTHO05D006835 2.1e-07 59.7 62 50.0
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 2.1e-07 59.7 46 56.5
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 2.1e-07 59.7 51 52.9
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 2.1e-07 59.7 57 43.9
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 2.8e-07 59.3 46 58.7
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 2.8e-07 59.3 46 58.7
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 3.6e-07 58.9 54 51.9
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 3.6e-07 58.9 55 43.6
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 3.6e-07 58.9 53 50.9
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 4.7e-07 58.5 46 56.5
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 4.7e-07 58.5 46 54.3
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 4.7e-07 58.5 53 49.1
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 4.7e-07 58.5 53 49.1
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 4.7e-07 58.5 53 49.1
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 4.7e-07 58.5 54 51.9
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 4.7e-07 58.5 53 49.1
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 4.7e-07 58.5 46 52.2
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 4.7e-07 58.5 46 58.7
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 6.1e-07 58.2 46 58.7
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 6.1e-07 58.2 44 56.8
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 6.1e-07 58.2 47 57.4
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 8.0e-07 57.8 46 52.2
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 8.0e-07 57.8 53 45.3
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 8.0e-07 57.8 65 44.6
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 1.0e-06 57.4 73 41.1
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 1.4e-06 57.0 53 50.9
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 1.8e-06 56.6 46 52.2
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.8e-06 56.6 46 54.3
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.8e-06 56.6 46 54.3
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 2.3e-06 56.2 53 43.4
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 2.3e-06 56.2 53 41.5
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 3.0e-06 55.8 54 46.3
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 4.0e-06 55.5 53 41.5
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 4.0e-06 55.5 53 47.2
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 4.0e-06 55.5 54 40.7
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 4.0e-06 55.5 53 47.2
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 5.2e-06 55.1 53 47.2
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 6.8e-06 54.7 53 47.2
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 8.9e-06 54.3 47 44.7
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 8.9e-06 54.3 47 44.7
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 8.9e-06 54.3 47 44.7
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 8.9e-06 54.3 47 44.7
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 8.9e-06 54.3 47 44.7
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 8.9e-06 54.3 47 44.7


User provided reference genes

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