Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 6.9e-287 989.9 501 100.0
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 7.0e-130 468.4 521 49.5
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 3.5e-113 412.9 511 43.2
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 3.6e-110 402.9 510 44.5
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 3.0e-109 399.8 517 43.7
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 5.2e-109 399.1 519 43.0
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 1.2e-108 397.9 516 43.2
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 5.7e-108 395.6 524 43.3
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 2.8e-107 393.3 511 42.9
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 3.7e-107 392.9 511 43.8
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 3.7e-107 392.9 525 42.5
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 6.3e-107 392.1 513 43.1
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 8.3e-107 391.7 511 43.6
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 2.4e-106 390.2 517 41.6
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 2.4e-106 390.2 513 42.1
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 2.4e-106 390.2 511 43.4
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 3.1e-106 389.8 497 44.5
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 3.1e-106 389.8 521 42.0
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 3.1e-106 389.8 516 43.6
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 4.1e-106 389.4 519 42.4
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 4.1e-106 389.4 520 42.7
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 4.1e-106 389.4 511 42.3
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 7.0e-106 388.7 510 42.9
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 7.0e-106 388.7 519 42.8
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 9.1e-106 388.3 508 43.5
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 9.1e-106 388.3 519 42.0
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 1.2e-105 387.9 516 43.0
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 2.0e-105 387.1 517 42.7
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 2.7e-105 386.7 508 43.5
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 2.7e-105 386.7 507 42.2
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 3.5e-105 386.3 502 43.0
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 4.5e-105 386.0 519 42.6
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 5.9e-105 385.6 512 42.2
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 1.3e-104 384.4 519 40.1
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 1.7e-104 384.0 496 43.3
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 5.0e-104 382.5 511 40.1
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.1e-103 381.3 521 41.8
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 1.1e-103 381.3 513 41.9
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 1.1e-103 381.3 513 41.1
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 1.1e-103 381.3 512 40.2
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.5e-103 380.9 512 40.0
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 3.3e-103 379.8 515 41.4
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 4.2e-103 379.4 513 41.7
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 7.2e-103 378.6 512 42.6
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 9.5e-103 378.3 540 41.5
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.2e-102 377.9 512 40.2
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 1.6e-102 377.5 504 42.5
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 2.1e-102 377.1 517 41.2
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 2.8e-102 376.7 518 42.3
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 3.6e-102 376.3 525 42.3
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 8.0e-102 375.2 514 40.7
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 8.0e-102 375.2 509 40.7
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 1.0e-101 374.8 523 42.8
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 3.0e-101 373.2 518 40.7
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 3.0e-101 373.2 510 41.0
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 5.2e-101 372.5 512 39.6
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 5.2e-101 372.5 507 41.0
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 5.2e-101 372.5 522 40.8
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 5.2e-101 372.5 527 40.8
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 6.8e-101 372.1 527 41.0
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 1.5e-100 370.9 509 41.3
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 6.3e-99 365.5 539 39.7
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 8.3e-99 365.2 537 39.9
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 1.6e-97 360.9 543 38.5
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.6e-97 360.9 554 40.1
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 2.7e-97 360.1 542 39.7
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 5.9e-97 359.0 524 40.1
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 1.1e-95 354.8 538 39.4
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 3.3e-95 353.2 526 39.5
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 9.5e-95 351.7 529 39.3
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 1.6e-94 350.9 529 39.1
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 1.6e-94 350.9 529 39.1
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 1.6e-94 350.9 529 39.1
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 4.7e-94 349.4 531 39.7
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 1.4e-93 347.8 539 38.0
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 1.4e-93 347.8 529 38.9
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 3.1e-93 346.7 523 39.0
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 1.5e-92 344.4 608 36.8
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 3.4e-92 343.2 573 37.0
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 5.8e-92 342.4 576 37.2
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 2.9e-91 340.1 509 38.1
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 4.1e-90 336.3 474 40.1
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 4.1e-90 336.3 508 39.6
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 3.5e-89 333.2 508 38.4
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 9.5e-87 325.1 498 40.4
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 1.2e-86 324.7 453 42.2
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 5.2e-85 319.3 510 37.8
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 2.0e-84 317.4 382 44.2
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 7.5e-84 315.5 488 38.1
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.6e-81 307.8 364 44.0
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.7e-80 304.3 393 41.5
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 6.6e-80 302.4 483 37.7
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 8.1e-78 295.4 359 44.3
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 5.2e-77 292.7 312 51.0
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 5.8e-68 262.7 234 57.7
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 1.3e-64 251.5 392 38.3
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 3.0e-56 223.8 522 32.2
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.3e-54 218.4 464 30.6
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 9.0e-53 212.2 280 40.0
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 9.3e-50 202.2 512 31.8
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 1.2e-49 201.8 266 43.6
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.3e-46 191.8 469 33.0
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 3.1e-45 187.2 264 41.7
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 4.0e-45 186.8 308 37.7
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 7.6e-44 182.6 254 39.8
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 3.5e-41 173.7 202 44.6
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 6.0e-41 172.9 251 40.2
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 1.3e-40 171.8 623 28.7
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 7.4e-39 166.0 222 41.9
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 2.1e-38 164.5 149 54.4
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.0e-27 129.0 492 24.4
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 5.5e-26 123.2 225 35.1
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 1.2e-25 122.1 232 33.2
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 3.6e-25 120.6 164 42.7
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 2.5e-23 114.4 255 30.6
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 9.7e-23 112.5 399 28.3
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 3.7e-22 110.5 179 39.7
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 3.1e-21 107.5 162 42.0
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 2.1e-17 94.7 83 51.8
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 3.6e-17 94.0 266 28.6
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 2.8e-14 84.3 148 35.8
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.1e-13 82.4 118 44.1
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 1.2e-12 79.0 95 43.2
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 5.5e-10 70.1 127 30.7
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 5.2e-08 63.5 55 49.1


User provided reference genes

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