Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 3.8e-42 174.5 91 100.0
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 2.5e-22 108.6 83 63.9
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 5.7e-22 107.5 87 65.5
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 2.2e-18 95.5 85 51.8
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 3.8e-18 94.7 87 55.2
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 6.5e-18 94.0 88 52.3
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 8.5e-18 93.6 85 52.9
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.1e-17 93.2 84 51.2
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.1e-17 93.2 85 54.1
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 1.1e-17 93.2 83 54.2
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 1.1e-17 93.2 88 53.4
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 1.4e-17 92.8 87 51.7
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 1.9e-17 92.4 83 57.8
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 2.5e-17 92.0 83 54.2
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 2.5e-17 92.0 83 54.2
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 2.5e-17 92.0 84 51.2
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 2.5e-17 92.0 88 53.4
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 2.5e-17 92.0 88 47.7
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 3.2e-17 91.7 83 53.0
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 4.2e-17 91.3 84 51.2
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 4.2e-17 91.3 86 53.5
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 4.2e-17 91.3 83 53.0
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 4.2e-17 91.3 90 50.0
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 5.5e-17 90.9 83 54.2
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 5.5e-17 90.9 83 54.2
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 7.2e-17 90.5 86 52.3
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 7.2e-17 90.5 84 51.2
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 7.2e-17 90.5 86 54.7
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 7.2e-17 90.5 86 52.3
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 7.2e-17 90.5 86 52.3
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 7.2e-17 90.5 86 52.3
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 9.3e-17 90.1 83 53.0
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 9.3e-17 90.1 83 53.0
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 9.3e-17 90.1 84 52.4
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 1.2e-16 89.7 87 49.4
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.2e-16 89.7 84 51.2
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 2.1e-16 89.0 83 51.8
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 2.1e-16 89.0 84 51.2
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 2.1e-16 89.0 84 52.4
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 3.6e-16 88.2 85 45.9
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 3.6e-16 88.2 86 51.2
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 3.6e-16 88.2 87 52.9
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 3.6e-16 88.2 87 49.4
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 6.1e-16 87.4 83 49.4
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 7.9e-16 87.0 90 50.0
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 7.9e-16 87.0 83 53.0
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 1.0e-15 86.7 82 51.2
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 1.0e-15 86.7 84 51.2
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.0e-15 86.7 87 48.3
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 1.4e-15 86.3 83 48.2
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 1.8e-15 85.9 88 50.0
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 1.8e-15 85.9 87 51.7
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.8e-15 85.9 82 52.4
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 2.3e-15 85.5 85 47.1
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 2.3e-15 85.5 84 52.4
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 2.3e-15 85.5 85 47.1
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 2.3e-15 85.5 83 54.2
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 3.0e-15 85.1 85 49.4
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 3.0e-15 85.1 86 47.7
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 3.0e-15 85.1 82 50.0
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 3.9e-15 84.7 82 50.0
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.9e-15 84.7 82 52.4
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 3.9e-15 84.7 82 52.4
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 3.9e-15 84.7 87 47.1
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 5.1e-15 84.3 90 48.9
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 5.1e-15 84.3 87 47.1
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 5.1e-15 84.3 83 48.2
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 6.7e-15 84.0 86 46.5
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 8.8e-15 83.6 87 49.4
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 8.8e-15 83.6 88 44.3
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 8.8e-15 83.6 88 44.3
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 8.8e-15 83.6 91 46.2
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.1e-14 83.2 82 50.0
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 1.1e-14 83.2 83 47.0
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.1e-14 83.2 82 46.3
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 1.5e-14 82.8 88 47.7
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 1.5e-14 82.8 82 51.2
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 1.9e-14 82.4 83 49.4
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.9e-14 82.4 90 48.9
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.9e-14 82.4 87 48.3
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 1.9e-14 82.4 83 47.0
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.5e-14 82.0 87 48.3
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 2.5e-14 82.0 78 51.3
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 3.3e-14 81.6 83 47.0
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 3.3e-14 81.6 85 47.1
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 4.3e-14 81.3 80 51.2
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 4.3e-14 81.3 87 47.1
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 4.3e-14 81.3 86 48.8
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 5.7e-14 80.9 87 44.8
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 1.3e-13 79.7 81 45.7
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 2.2e-13 79.0 88 47.7
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 4.8e-13 77.8 87 44.8
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 8.2e-13 77.0 89 42.7
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 6.9e-12 73.9 82 43.9
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 1.2e-11 73.2 80 51.2
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 3.4e-11 71.6 82 45.1
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 5.9e-11 70.9 73 46.6
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 1.0e-10 70.1 80 38.8
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 1.7e-10 69.3 82 45.1
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 1.7e-10 69.3 81 42.0
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 2.9e-10 68.6 76 47.4
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 2.9e-10 68.6 73 42.5
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 2.9e-10 68.6 73 50.7
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 3.8e-10 68.2 73 46.6
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 6.5e-10 67.4 80 43.8
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 6.5e-10 67.4 80 43.8
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 8.5e-10 67.0 80 42.5
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 1.1e-09 66.6 79 43.0
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 1.4e-09 66.2 66 50.0
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 1.9e-09 65.9 79 43.0
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 1.9e-09 65.9 86 41.9
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 3.2e-09 65.1 79 43.0
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 4.2e-09 64.7 79 43.0
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 4.2e-09 64.7 79 43.0
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 4.2e-09 64.7 64 48.4
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 7.2e-09 63.9 59 49.2
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 9.4e-09 63.5 79 43.0
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 1.2e-08 63.2 79 43.0
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 1.2e-08 63.2 79 43.0
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 1.2e-08 63.2 75 42.7
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 1.2e-08 63.2 79 43.0
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 1.2e-08 63.2 79 43.0
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 1.6e-08 62.8 81 43.2
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 2.1e-08 62.4 79 43.0
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 2.1e-08 62.4 79 43.0
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 2.1e-08 62.4 82 40.2
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 2.1e-08 62.4 82 40.2
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 2.7e-08 62.0 65 47.7
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 3.6e-08 61.6 82 41.5
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 3.6e-08 61.6 79 40.5
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 3.6e-08 61.6 79 41.8
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 3.6e-08 61.6 79 40.5
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 4.7e-08 61.2 64 48.4
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 1.0e-07 60.1 82 40.2
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 3.0e-07 58.5 79 40.5
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 3.0e-07 58.5 79 40.5
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 3.0e-07 58.5 79 40.5
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 8.8e-07 57.0 81 39.5
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.5e-06 56.2 65 46.2
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 9.7e-06 53.5 72 41.7


User provided reference genes

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