Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 2.5e-122 442.2 232 100.0
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 8.4e-54 214.5 182 65.9
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 1.4e-53 213.8 182 65.4
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 7.8e-52 208.0 213 55.4
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 1.0e-51 207.6 207 56.0
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 1.7e-51 206.8 182 63.2
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.3e-51 206.5 234 50.9
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.9e-51 205.7 213 54.9
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 6.6e-51 204.9 182 59.9
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 1.1e-50 204.1 214 55.1
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 1.9e-50 203.4 177 62.1
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 4.3e-50 202.2 188 61.7
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 4.3e-50 202.2 169 64.5
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 7.3e-50 201.4 182 59.3
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 2.8e-49 199.5 236 52.1
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 2.8e-49 199.5 182 59.3
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 4.8e-49 198.7 242 52.1
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 2.4e-48 196.4 180 61.1
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 2.4e-48 196.4 180 61.1
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 3.1e-48 196.1 180 59.4
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 1.2e-47 194.1 181 59.1
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 1.5e-47 193.7 192 55.7
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.4e-47 192.6 193 57.5
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 3.4e-47 192.6 183 56.3
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 5.8e-47 191.8 182 61.5
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 5.8e-47 191.8 176 59.1
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 5.8e-47 191.8 193 56.5
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 7.6e-47 191.4 179 60.3
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 1.7e-46 190.3 219 54.8
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 2.2e-46 189.9 180 60.6
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 2.2e-46 189.9 181 59.7
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 2.9e-46 189.5 175 59.4
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 2.9e-46 189.5 180 59.4
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 2.9e-46 189.5 181 57.5
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 2.9e-46 189.5 234 50.9
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 3.8e-46 189.1 149 65.8
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 3.8e-46 189.1 179 60.3
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 3.8e-46 189.1 181 59.1
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 3.8e-46 189.1 176 59.1
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 4.9e-46 188.7 180 57.8
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 4.9e-46 188.7 180 58.3
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 6.4e-46 188.3 183 56.3
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 6.4e-46 188.3 193 53.4
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 1.9e-45 186.8 180 60.0
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 2.4e-45 186.4 179 60.3
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 2.4e-45 186.4 180 58.3
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 3.2e-45 186.0 181 59.7
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 3.2e-45 186.0 180 58.9
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 4.2e-45 185.7 180 58.9
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 4.2e-45 185.7 188 56.9
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 5.4e-45 185.3 191 57.1
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 7.1e-45 184.9 180 57.8
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 7.1e-45 184.9 180 57.8
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 7.1e-45 184.9 199 53.8
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 9.3e-45 184.5 179 59.2
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 9.3e-45 184.5 210 52.4
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 1.2e-44 184.1 181 56.9
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 1.2e-44 184.1 181 56.9
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 1.2e-44 184.1 181 56.9
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 1.2e-44 184.1 237 48.9
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.2e-44 184.1 180 57.8
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 1.2e-44 184.1 180 57.2
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.6e-44 183.7 180 57.8
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 1.6e-44 183.7 196 54.1
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 2.1e-44 183.3 181 58.0
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 2.7e-44 183.0 180 58.3
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 3.5e-44 182.6 234 49.1
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 4.6e-44 182.2 181 56.4
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 4.6e-44 182.2 180 58.3
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 6.0e-44 181.8 182 57.1
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 6.0e-44 181.8 180 57.8
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 7.9e-44 181.4 181 56.4
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 1.0e-43 181.0 234 50.0
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 1.8e-43 180.3 224 48.7
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 1.8e-43 180.3 176 56.2
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.8e-43 180.3 182 56.6
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.8e-43 180.3 182 56.6
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 2.3e-43 179.9 226 49.6
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 3.0e-43 179.5 173 59.0
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 3.0e-43 179.5 169 59.2
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 5.1e-43 178.7 187 54.5
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 5.1e-43 178.7 235 49.8
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 1.1e-42 177.6 184 56.0
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 1.5e-42 177.2 186 54.3
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 1.5e-42 177.2 168 58.3
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 2.5e-42 176.4 183 54.1
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 2.5e-42 176.4 183 55.2
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 2.5e-42 176.4 151 64.2
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 3.3e-42 176.0 138 65.9
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 5.6e-42 175.3 179 55.9
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 5.6e-42 175.3 221 50.7
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 7.4e-42 174.9 230 46.1
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 7.4e-42 174.9 186 54.8
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 2.8e-41 172.9 150 62.7
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 2.8e-41 172.9 183 53.6
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 3.7e-41 172.6 168 57.7
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 6.2e-41 171.8 181 54.7
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 8.1e-41 171.4 208 52.4
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 1.4e-40 170.6 212 47.6
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 3.1e-40 169.5 189 51.9
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 4.0e-40 169.1 181 54.7
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 4.5e-39 165.6 222 49.5
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 5.8e-39 165.2 181 53.0
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 1.3e-38 164.1 244 45.5
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 1.7e-38 163.7 186 51.1
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 1.1e-37 161.0 130 64.6
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.7e-36 156.4 130 66.9
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 7.9e-36 154.8 183 47.5
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 6.7e-35 151.8 184 51.6
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 9.3e-29 131.3 123 56.1
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 3.5e-28 129.4 195 44.6
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 2.3e-27 126.7 174 44.3
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 6.7e-27 125.2 138 50.7
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 5.7e-26 122.1 153 51.0
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 3.7e-25 119.4 91 61.5
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 6.3e-25 118.6 129 51.9
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.0e-23 113.6 199 41.2
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.1e-20 103.6 78 64.1
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.8e-19 100.5 160 43.1
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.9e-19 99.4 109 54.1
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.5e-18 96.7 91 58.2
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 2.5e-18 96.7 120 43.3
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 5.7e-18 95.5 94 51.1
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 5.7e-18 95.5 91 57.1
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 1.3e-17 94.4 89 58.4
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 3.7e-17 92.8 91 56.0
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 1.1e-16 91.3 159 36.5
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 1.1e-16 91.3 159 36.5
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 3.1e-16 89.7 261 32.6
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 1.2e-15 87.8 166 34.9
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.3e-14 84.3 165 33.9
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 2.9e-14 83.2 133 43.6
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 3.8e-14 82.8 53 73.6
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 6.5e-14 82.0 135 37.8
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 3.9e-11 72.8 189 31.7
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 8.2e-09 65.1 112 36.6
Ca_28818_v3 Cicer arietinum L. HOM05D005346 ORTHO05D007051 1.1e-08 64.7 125 36.0


User provided reference genes

Program Settings