Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 0.0e+00 2325.4 1236 100.0
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 0.0e+00 1258.4 1241 56.2
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1124.4 1137 53.9
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 6.9e-296 1021.1 1031 52.1
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 4.4e-295 1018.5 1080 50.1
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 1.3e-294 1016.9 1032 52.2
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 9.3e-293 1010.7 1035 51.4
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 4.3e-290 1001.9 958 53.3
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 4.0e-288 995.3 1024 51.1
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 5.3e-288 995.0 1027 51.5
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 2.0e-287 993.0 1029 50.7
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 2.6e-287 992.6 1037 50.7
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 7.6e-287 991.1 1046 50.8
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 5.5e-285 984.9 1092 48.3
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 4.6e-284 981.9 1052 49.0
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 1.0e-283 980.7 964 53.1
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 1.0e-283 980.7 999 50.9
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 1.3e-283 980.3 998 53.0
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 1.3e-283 980.3 1052 49.1
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 3.0e-283 979.2 1001 50.8
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 1.9e-282 976.5 1052 49.0
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 3.3e-282 975.7 997 50.4
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 3.3e-282 975.7 995 50.6
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 1.6e-281 973.4 1002 50.4
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 4.0e-280 968.8 1029 49.9
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 5.8e-279 964.9 1058 48.9
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 1.2e-276 957.2 959 52.3
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 2.1e-276 956.4 1000 50.5
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 2.1e-276 956.4 1035 49.0
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 2.3e-275 953.0 1033 49.4
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 3.9e-275 952.2 1046 48.3
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 3.9e-275 952.2 1050 48.6
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 2.5e-274 949.5 1081 48.1
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 5.7e-274 948.3 1007 51.2
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 1.3e-273 947.2 1131 47.2
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 2.1e-273 946.4 1038 48.7
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 3.7e-273 945.7 978 50.3
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 4.8e-273 945.3 997 49.6
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 8.2e-273 944.5 1056 47.9
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 4.1e-272 942.2 1056 47.6
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 6.9e-272 941.4 1069 47.7
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 1.2e-271 940.6 1000 49.2
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 2.0e-271 939.9 996 50.3
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 2.0e-271 939.9 1033 49.3
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 3.4e-271 939.1 994 50.4
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 6.5e-270 934.9 1087 46.6
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 5.5e-269 931.8 1078 47.2
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 1.3e-267 927.2 998 47.9
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 8.7e-267 924.5 1065 46.9
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 1.5e-266 923.7 1040 47.4
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 2.5e-266 922.9 992 48.9
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 3.3e-266 922.5 997 49.0
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 7.4e-266 921.4 1041 47.5
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 1.6e-265 920.2 997 47.3
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 1.6e-265 920.2 1046 47.9
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 2.2e-265 919.8 1040 47.5
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 3.7e-265 919.1 1046 47.9
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 1.8e-264 916.8 1050 47.1
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 4.1e-264 915.6 1194 43.7
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 9.0e-264 914.4 1000 48.2
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 1.2e-263 914.1 1087 47.7
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 1.2e-263 914.1 1025 47.2
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 1.2e-263 914.1 1070 47.0
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 3.4e-263 912.5 1026 47.2
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 2.2e-262 909.8 1087 46.0
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 2.9e-262 909.4 1025 46.7
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 6.5e-262 908.3 1087 45.8
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 8.5e-262 907.9 1018 48.3
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 1.9e-261 906.7 1048 46.6
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 3.2e-261 906.0 1004 47.1
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 3.2e-261 906.0 994 47.8
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 7.2e-261 904.8 996 47.7
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 1.2e-260 904.0 1021 47.3
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 1.6e-260 903.7 1000 48.5
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 2.1e-260 903.3 1105 44.5
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 3.6e-260 902.5 1006 47.3
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 3.6e-260 902.5 1061 46.7
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 4.6e-260 902.1 1001 47.5
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 6.7e-259 898.3 1048 46.2
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 6.7e-259 898.3 992 47.7
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 8.8e-259 897.9 1019 46.9
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 1.5e-258 897.1 1002 47.2
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 1.5e-258 897.1 1023 47.0
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 5.7e-258 895.2 1019 46.7
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 2.4e-256 889.8 1030 46.3
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 5.3e-256 888.6 1011 47.6
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 9.1e-256 887.9 1029 46.9
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 2.0e-255 886.7 1036 46.0
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 2.6e-255 886.3 1002 48.2
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 1.7e-254 883.6 929 50.4
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 1.4e-253 880.6 1086 45.0
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 5.5e-253 878.6 1046 45.6
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 7.2e-253 878.2 1025 44.7
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 1.0e-251 874.4 1079 45.6
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 1.5e-250 870.5 995 47.5
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 3.7e-249 865.9 963 48.8
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 5.3e-248 862.1 1016 47.3
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 2.7e-244 849.7 1004 46.8
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 3.0e-243 846.3 988 46.4
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 7.5e-242 841.6 1037 45.8
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 1.0e-238 831.2 991 45.2
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 1.2e-236 824.3 1057 44.4
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 4.0e-235 819.3 883 49.2
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 5.7e-234 815.5 1027 44.3
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.1e-232 811.2 923 48.4
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 5.0e-230 802.4 1081 41.9
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 1.8e-224 783.9 1037 43.6
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 3.1e-224 783.1 1201 42.1
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 4.1e-216 756.1 822 48.2
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 1.5e-213 747.7 963 42.0
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 4.3e-213 746.1 780 50.8
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.2e-207 728.0 679 54.3
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 1.1e-189 668.3 787 46.3
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 1.6e-188 664.5 1018 38.1
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.9e-149 534.6 555 51.9
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.9e-149 534.6 555 51.9
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 4.2e-144 516.9 600 46.3
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 8.8e-126 456.1 535 44.7
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 2.4e-107 394.8 363 56.7
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 8.7e-65 253.4 401 38.7
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 1.3e-60 239.6 1046 25.0
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 5.7e-40 171.0 621 26.4
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 1.0e-36 160.2 202 46.0
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 1.1e-35 156.8 416 29.6
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 3.6e-34 151.8 170 48.2
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 9.7e-32 143.7 143 54.5
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 1.0e-25 123.6 173 39.9
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 9.7e-24 117.1 158 43.7
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 5.3e-22 111.3 162 38.3
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.0e-20 107.1 170 39.4
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.7e-15 89.7 134 39.6
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 4.8e-15 88.2 160 33.1
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 1.4e-09 70.1 68 48.5
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 4.0e-09 68.6 97 40.2
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 1.2e-08 67.0 80 45.0
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.7e-07 62.0 108 37.0


User provided reference genes

Program Settings