Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 0.0e+00 1680.2 847 100.0
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 1.9e-148 530.8 862 39.0
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 1.8e-133 481.1 833 35.4
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 3.0e-101 374.0 840 32.7
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 4.4e-100 370.2 840 32.7
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 6.3e-99 366.3 829 31.0
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 6.5e-96 356.3 832 31.2
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 8.5e-96 355.9 691 34.2
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 4.7e-94 350.1 825 30.8
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 8.0e-94 349.4 826 30.6
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 2.3e-93 347.8 826 30.4
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 3.0e-93 347.4 848 30.5
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 3.7e-91 340.5 825 29.2
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 4.1e-90 337.0 831 30.6
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 1.7e-88 331.6 825 28.4
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 2.2e-88 331.3 877 29.2
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 5.0e-88 330.1 825 29.6
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 6.5e-88 329.7 827 30.6
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 1.1e-87 328.9 708 31.6
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 1.5e-87 328.6 828 29.5
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 3.2e-87 327.4 826 29.3
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 5.5e-87 326.6 826 29.4
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 5.5e-87 326.6 847 28.7
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 4.7e-86 323.6 704 30.5
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 4.7e-86 323.6 695 30.4
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 8.0e-86 322.8 709 30.9
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 8.0e-86 322.8 687 32.2
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 1.4e-85 322.0 831 29.4
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 2.3e-85 321.2 825 28.1
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 5.2e-85 320.1 825 29.8
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 1.2e-84 318.9 807 28.9
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 2.6e-84 317.8 731 30.6
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 2.6e-84 317.8 826 27.8
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 9.8e-84 315.8 853 29.3
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 1.7e-83 315.1 828 29.0
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 2.2e-83 314.7 826 28.1
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 2.2e-83 314.7 731 31.7
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 2.2e-83 314.7 831 28.8
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 8.3e-83 312.8 849 28.6
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 1.8e-82 311.6 825 27.6
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 2.4e-82 311.2 825 28.1
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 3.1e-82 310.8 716 30.6
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 3.1e-82 310.8 702 30.8
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 3.1e-82 310.8 825 27.8
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 3.1e-82 310.8 695 31.4
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 4.1e-82 310.5 722 29.4
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 9.1e-82 309.3 842 29.0
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 1.2e-81 308.9 825 27.6
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 2.0e-81 308.1 831 28.6
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 3.5e-81 307.4 842 28.9
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 5.9e-81 306.6 729 29.2
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 7.7e-81 306.2 828 28.3
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 1.0e-80 305.8 683 31.3
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 1.3e-80 305.4 831 28.3
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.7e-80 305.1 826 27.1
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 2.2e-80 304.7 740 29.6
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 3.8e-80 303.9 701 30.5
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 1.9e-79 301.6 842 27.8
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 4.2e-79 300.4 711 30.0
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 7.2e-79 299.7 828 27.1
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 1.6e-78 298.5 831 28.6
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 4.7e-78 297.0 721 29.0
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 6.1e-78 296.6 827 27.6
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 4.0e-77 293.9 689 29.5
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 6.8e-77 293.1 824 27.8
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 8.8e-77 292.7 848 28.5
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 1.5e-76 292.0 725 29.5
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 7.5e-76 289.7 692 30.6
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 9.8e-76 289.3 691 29.4
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 1.7e-75 288.5 826 27.0
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 4.1e-74 283.9 620 31.3
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 7.0e-74 283.1 693 29.1
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 4.5e-73 280.4 486 35.8
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 2.9e-72 277.7 829 28.2
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 8.6e-72 276.2 830 28.1
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 2.5e-71 274.6 529 33.5
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 7.2e-71 273.1 378 39.4
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 1.2e-70 272.3 829 27.4
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 8.0e-70 269.6 711 28.6
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 2.0e-68 265.0 695 28.3
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 5.7e-68 263.5 640 31.1
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 3.9e-64 250.8 866 26.9
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 3.3e-63 247.7 576 29.2
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 1.2e-62 245.7 473 32.6
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 4.0e-61 240.7 618 29.6
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 4.4e-60 237.3 593 30.7
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 9.8e-60 236.1 576 29.7
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 2.7e-57 228.0 577 30.3
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 6.6e-56 223.4 559 30.2
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 6.6e-56 223.4 566 30.0
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 1.5e-55 222.2 637 27.3
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 3.3e-55 221.1 754 24.9
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 5.6e-55 220.3 559 27.7
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 4.6e-49 200.7 558 28.9
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 6.0e-49 200.3 686 25.1
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 3.9e-48 197.6 395 31.6
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 7.3e-47 193.4 378 31.7
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 2.8e-46 191.4 396 33.1
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.8e-45 188.7 388 30.9
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 4.4e-44 184.1 355 34.6
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 1.4e-42 179.1 728 23.6
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 4.8e-30 137.5 183 38.8
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 2.0e-28 132.1 163 40.5
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 3.9e-24 117.9 161 41.6
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 4.3e-23 114.4 328 26.8
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 1.1e-21 109.8 249 31.7
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.5e-20 105.9 342 27.5
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 1.4e-18 99.4 231 28.1
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 1.1e-15 89.7 123 35.0
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 1.7e-11 75.9 88 39.8
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 1.7e-11 75.9 282 30.5
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 2.9e-11 75.1 98 37.8
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 1.6e-09 69.3 226 25.7
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.3e-08 66.2 193 27.5


User provided reference genes

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