Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_3810 Physcomitrium patens HOM05D006840 ORTHO05D008588 2.8e-194 681.8 351 100.0
Pp3c15_10950 Physcomitrium patens HOM05D006840 ORTHO05D008588 1.1e-124 450.7 294 79.6
Mapoly0031s0189 Marchantia polymorpha HOM05D006840 ORTHO05D008588 6.2e-85 318.5 264 60.2
RcHm_v2.0_Chr3g0447741 Rosa chinensis HOM05D006840 ORTHO05D008588 5.7e-78 295.4 279 54.5
MD04G1245900 Malus domestica HOM05D006840 ORTHO05D008588 9.6e-78 294.7 249 57.4
Lj1A575G23 Lonicera japonica HOM05D006840 ORTHO05D008588 2.8e-77 293.1 243 58.0
HanXRQChr15g0492181 Helianthus annuus HOM05D006840 ORTHO05D008588 6.2e-77 292.0 275 54.5
ECA232G2794 Erigeron canadensis HOM05D006840 ORTHO05D008588 1.4e-76 290.8 273 53.8
MD12G1264100 Malus domestica HOM05D006840 ORTHO05D008588 2.4e-76 290.0 249 56.2
Gohir.D08G247000 Gossypium hirsutum HOM05D006840 ORTHO05D008588 3.1e-76 289.7 249 56.6
Prupe.6G362300 Prunus persica HOM05D006840 ORTHO05D008588 5.3e-76 288.9 250 56.8
GSVIVG01019072001 Vitis vinifera HOM05D006840 ORTHO05D008588 5.3e-76 288.9 265 55.1
Eucgr.B01421 Eucalyptus grandis HOM05D006840 ORTHO05D008588 6.9e-76 288.5 273 54.9
EL10Ac4g09995 Beta vulgaris HOM05D006840 ORTHO05D008588 9.0e-76 288.1 248 56.5
Gohir.A08G226600 Gossypium hirsutum HOM05D006840 ORTHO05D008588 1.5e-75 287.3 249 56.2
FvH4_6g00410 Fragaria vesca HOM05D006840 ORTHO05D008588 2.0e-75 287.0 243 57.6
Manes.13G004800 Manihot esculenta HOM05D006840 ORTHO05D008588 2.0e-75 287.0 252 56.0
PGR119G2059 Punica granatum HOM05D006840 ORTHO05D008588 4.5e-75 285.8 272 52.2
FAN09G3232 Fragaria x ananassa HOM05D006840 ORTHO05D008588 7.6e-75 285.0 243 57.2
Migut.F02113 Erythranthe guttata HOM05D006840 ORTHO05D008588 1.3e-74 284.3 249 55.0
AUR62000298 Chenopodium quinoa HOM05D006840 ORTHO05D008588 1.7e-74 283.9 238 58.8
Glyma.09G249400 Glycine max HOM05D006840 ORTHO05D008588 2.2e-74 283.5 278 52.5
Lsat_1_v5_gn_0_18400 Lactuca sativa HOM05D006840 ORTHO05D008588 2.2e-74 283.5 275 53.8
Lj1g0027213 Lotus japonicus HOM05D006840 ORTHO05D008588 2.2e-74 283.5 314 49.4
Rhsim06G0181200 Rhododendron simsii HOM05D006840 ORTHO05D008588 2.9e-74 283.1 275 53.5
Duzib106G1767 Durio zibethinus HOM05D006840 ORTHO05D008588 3.8e-74 282.7 252 55.2
PSO357G0633 Papaver somniferum HOM05D006840 ORTHO05D008588 8.4e-74 281.6 284 50.0
HanXRQChr15g0491491 Helianthus annuus HOM05D006840 ORTHO05D008588 1.1e-73 281.2 293 51.5
CANSAT54G1191 Cannabis sativa HOM05D006840 ORTHO05D008588 1.4e-73 280.8 291 50.2
SMO353G0271 Selaginella moellendorffii HOM05D006840 ORTHO05D008588 1.4e-73 280.8 264 55.7
Atru.BG.274.p Acer truncatum HOM05D006840 ORTHO05D008588 1.9e-73 280.4 236 57.6
CSS0048734 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 2.5e-73 280.0 248 54.8
AUR62006644 Chenopodium quinoa HOM05D006840 ORTHO05D008588 3.2e-73 279.6 252 55.2
PGSC0003DMG400010521 Solanum tuberosum HOM05D006840 ORTHO05D008588 4.2e-73 279.3 257 55.6
MELO3C010008.2 Cucumis melo HOM05D006840 ORTHO05D008588 5.5e-73 278.9 287 49.1
CAN.G642.5 Capsicum annuum HOM05D006840 ORTHO05D008588 7.1e-73 278.5 250 56.4
Nitab4.5_0000083g0050 Nicotiana tabacum HOM05D006840 ORTHO05D008588 7.1e-73 278.5 252 54.8
Glyma.18G243000 Glycine max HOM05D006840 ORTHO05D008588 9.3e-73 278.1 292 50.3
Peaxi162Scf00529g00710 Petunia axillaris HOM05D006840 ORTHO05D008588 1.2e-72 277.7 304 49.0
Potri.013G085300 Populus trichocarpa HOM05D006840 ORTHO05D008588 1.6e-72 277.3 249 55.0
arahy.Tifrunner.gnm1.ann1.SXK3FV Arachis hypogaea HOM05D006840 ORTHO05D008588 2.7e-72 276.6 241 56.0
Gorai.004G263500 Gossypium raimondii HOM05D006840 ORTHO05D008588 2.7e-72 276.6 274 51.5
MSTRG.27397 Avicennia marina HOM05D006840 ORTHO05D008588 3.5e-72 276.2 252 53.2
PSO170G0121 Papaver somniferum HOM05D006840 ORTHO05D008588 3.5e-72 276.2 298 48.3
CiPaw.08G114500 Carya illinoinensis HOM05D006840 ORTHO05D008588 6.1e-72 275.4 307 47.9
QL01p049413 Quercus lobata HOM05D006840 ORTHO05D008588 7.9e-72 275.0 248 52.8
Solyc04g056580.3 Solanum lycopersicum HOM05D006840 ORTHO05D008588 7.9e-72 275.0 257 54.5
Lalb_Chr03g0038681 Lupinus albus HOM05D006840 ORTHO05D008588 1.0e-71 274.6 276 52.5
Sc06g0005020 Simmondsia chinensis HOM05D006840 ORTHO05D008588 1.0e-71 274.6 283 49.5
Phvul.008G053500 Phaseolus vulgaris HOM05D006840 ORTHO05D008588 1.3e-71 274.2 247 54.3
Sabra13G0078300 Salix brachista HOM05D006840 ORTHO05D008588 1.3e-71 274.2 249 53.4
Sed0002286 Sechium edule HOM05D006840 ORTHO05D008588 2.3e-71 273.5 240 53.8
CsaV3_1G044150 Cucumis sativus L. HOM05D006840 ORTHO05D008588 3.0e-71 273.1 305 46.9
Oeu020467.1 Olea europaea HOM05D006840 ORTHO05D008588 3.0e-71 273.1 228 57.9
Os01g0912700 Oryza sativa ssp. japonica HOM05D006840 ORTHO05D008588 3.9e-71 272.7 249 53.8
Sopen04g025500 Solanum pennellii HOM05D006840 ORTHO05D008588 8.7e-71 271.6 257 53.7
Nitab4.5_0009290g0020 Nicotiana tabacum HOM05D006840 ORTHO05D008588 1.1e-70 271.2 263 52.5
ATR0215G001 Amborella trichopoda HOM05D006840 ORTHO05D008588 3.3e-70 269.6 277 52.0
CSS0032443 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 4.3e-70 269.2 233 56.7
VMungo1383G2163 Vigna mungo HOM05D006840 ORTHO05D008588 4.3e-70 269.2 264 52.7
HPP92_000447 Vanilla planifolia HOM05D006840 ORTHO05D008588 7.4e-70 268.5 252 54.0
Psat3g102720 Pisum sativum HOM05D006840 ORTHO05D008588 9.7e-70 268.1 305 47.2
SalBow1G4059 Salvia bowleyana HOM05D006840 ORTHO05D008588 9.7e-70 268.1 227 54.6
TPR.G23771 Trifolium pratense HOM05D006840 ORTHO05D008588 2.2e-69 266.9 263 51.0
vmacro12041 Vaccinium macrocarpon HOM05D006840 ORTHO05D008588 2.8e-69 266.5 314 46.8
TWI75G0198 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 3.7e-69 266.2 278 49.3
DCAR_028385 Daucus carota HOM05D006840 ORTHO05D008588 6.3e-69 265.4 276 50.4
Medtr7g080220 Medicago truncatula HOM05D006840 ORTHO05D008588 1.1e-68 264.6 264 51.9
ClCG03G011690 Citrullus lanatus HOM05D006840 ORTHO05D008588 3.1e-68 263.1 288 46.5
TWI36G0520 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 9.0e-68 261.5 298 46.6
FAN02G1048 Fragaria x ananassa HOM05D006840 ORTHO05D008588 1.5e-67 260.8 213 58.2
THA.LOC104821923 Tarenaya hassleriana HOM05D006840 ORTHO05D008588 1.5e-67 260.8 245 51.4
arahy.Tifrunner.gnm1.ann1.1ED5VS Arachis hypogaea HOM05D006840 ORTHO05D008588 2.0e-67 260.4 318 45.9
FAN05G5535 Fragaria x ananassa HOM05D006840 ORTHO05D008588 2.0e-67 260.4 213 57.7
AL2G20230 Arabidopsis lyrata HOM05D006840 ORTHO05D008588 2.6e-67 260.0 253 51.8
Thecc.05G192600 Theobroma cacao HOM05D006840 ORTHO05D008588 4.5e-67 259.2 288 48.3
Hund21908 Selenicereus undatus HOM05D006840 ORTHO05D008588 7.7e-67 258.5 321 44.2
Carub.0002s1076 Capsella rubella HOM05D006840 ORTHO05D008588 1.0e-66 258.1 253 51.4
FAN14G4782 Fragaria x ananassa HOM05D006840 ORTHO05D008588 1.7e-66 257.3 213 57.7
AT1G65230 Arabidopsis thaliana HOM05D006840 ORTHO05D008588 2.2e-66 256.9 253 51.4
SGA_v2.0_scaffold62G21495 Striga asiatica HOM05D006840 ORTHO05D008588 2.9e-66 256.5 239 50.6
Aqoxy5G00025 Aquilegia oxysepala HOM05D006840 ORTHO05D008588 5.0e-66 255.8 242 52.5
Cc09_g03780 Coffea canephora HOM05D006840 ORTHO05D008588 5.0e-66 255.8 313 46.0
Aa31LG2G2360 Aethionema arabicum HOM05D006840 ORTHO05D008588 5.5e-65 252.3 287 48.1
BcaB05g24097 Brassica carinata HOM05D006840 ORTHO05D008588 7.2e-65 251.9 248 49.6
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 7.2e-65 251.9 242 52.5
Dinv29090 Davidia involucrata HOM05D006840 ORTHO05D008588 1.2e-64 251.1 264 50.0
CARHR056840 Cardamine hirsuta HOM05D006840 ORTHO05D008588 1.6e-64 250.8 240 52.1
CDE02G0188 Ceratophyllum demersum HOM05D006840 ORTHO05D008588 4.6e-64 249.2 230 52.6
Cfa006254 Carpinus fangiana HOM05D006840 ORTHO05D008588 1.0e-63 248.1 219 53.4
BcaC03g14685 Brassica carinata HOM05D006840 ORTHO05D008588 1.4e-63 247.7 248 48.8
A02p13110 Brassica napus HOM05D006840 ORTHO05D008588 2.3e-63 246.9 248 48.8
BraA02t06367Z Brassica rapa HOM05D006840 ORTHO05D008588 2.3e-63 246.9 248 48.8
C02p21250 Brassica napus HOM05D006840 ORTHO05D008588 6.7e-63 245.4 248 48.8
BolC2t08265H Brassica oleracea HOM05D006840 ORTHO05D008588 8.8e-63 245.0 248 48.4
Thhalv10018969m.g Eutrema salsugineum HOM05D006840 ORTHO05D008588 4.3e-62 242.7 246 48.8
Haze_04572 Corylus avellana HOM05D006840 ORTHO05D008588 1.1e-60 238.0 200 55.0
Sp5g19910 Schrenkiella parvula HOM05D006840 ORTHO05D008588 3.1e-60 236.5 248 48.0
Ca_07995_v3 Cicer arietinum L. HOM05D006840 ORTHO05D008588 9.1e-60 235.0 243 48.1
Ciclev10013335m.g Citrus clementina HOM05D006840 ORTHO05D008588 9.1e-60 235.0 255 49.0
Nn7g37259 Nelumbo nucifera HOM05D006840 ORTHO05D008588 1.5e-59 234.2 287 46.0
AagrBONN_evm.TU.Sc2ySwM_228.2548 Anthoceros agrestis HOM05D006840 ORTHO05D008588 8.5e-58 228.4 247 49.4
CBR_g8822 Chara braunii HOM05D006840 ORTHO05D008588 4.2e-57 226.1 266 48.1
unitig_22.g5732 Utricularia gibba HOM05D006840 ORTHO05D008588 1.2e-56 224.6 230 50.9
Cpa.g.sc39.39 Carica papaya HOM05D006840 ORTHO05D008588 2.7e-56 223.4 309 43.7
Lj1A595G27 Lonicera japonica HOM05D006840 ORTHO05D008588 1.8e-55 220.7 170 60.0
MBI19_g03256_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 8.2e-53 211.8 247 45.3
Actinidia31085 Actinidia chinensis HOM05D006840 ORTHO05D008588 9.4e-49 198.4 218 49.5
SEGI_09257 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 4.0e-47 193.0 179 52.5
MBI07_g00615_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 3.2e-41 173.3 148 58.1
MCO02G353 Micromonas commoda HOM05D006840 ORTHO05D008588 1.0e-26 125.2 225 35.6
Cre12.g536800 Chlamydomonas reinhardtii HOM05D006840 ORTHO05D008588 4.9e-21 106.3 217 32.7
SEGI_35940 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 5.8e-14 82.8 91 45.1
Actinidia34706 Actinidia chinensis HOM05D006840 ORTHO05D008588 2.7e-11 73.9 122 38.5
Zm00001eb424130 Zea mays HOM05D006840 ORTHO05D008588 2.3e-10 70.9 70 42.9
Zm00001eb424170 Zea mays HOM05D006840 ORTHO05D008588 2.3e-10 70.9 70 42.9
Pp3c15_10940 Physcomitrium patens HOM05D014292 ORTHO05D016500 6.8e-07 59.3 81 49.4


User provided reference genes

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