Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 8.8e-125 450.3 224 100.0
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 1.2e-89 333.6 218 73.9
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 7.3e-87 324.3 219 70.8
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 9.8e-84 313.9 219 68.5
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 1.6e-81 306.6 219 65.3
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 3.0e-80 302.4 219 66.2
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 3.9e-80 302.0 212 65.1
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 1.5e-79 300.1 212 66.5
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 1.9e-79 299.7 212 66.5
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 1.9e-79 299.7 212 66.5
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 2.5e-79 299.3 216 66.2
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 3.3e-79 298.9 212 67.0
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 4.3e-79 298.5 212 66.0
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 4.3e-79 298.5 212 66.5
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 9.5e-79 297.4 212 65.6
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 1.2e-78 297.0 219 63.9
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 1.6e-78 296.6 212 65.1
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 1.6e-78 296.6 215 64.2
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 1.6e-78 296.6 218 64.2
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 2.1e-78 296.2 217 64.5
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 2.1e-78 296.2 215 64.7
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 2.8e-78 295.8 219 64.4
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 2.8e-78 295.8 212 66.0
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 2.8e-78 295.8 212 65.6
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 2.8e-78 295.8 218 66.1
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 4.7e-78 295.0 212 66.5
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 4.7e-78 295.0 217 63.1
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 6.2e-78 294.7 213 64.8
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 6.2e-78 294.7 213 65.3
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 6.2e-78 294.7 213 66.7
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 8.0e-78 294.3 218 65.1
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 1.0e-77 293.9 211 65.9
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 1.4e-77 293.5 212 66.0
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 1.4e-77 293.5 215 63.3
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.8e-77 293.1 212 65.6
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 1.8e-77 293.1 214 65.0
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 1.8e-77 293.1 215 62.8
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 2.3e-77 292.7 218 64.7
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 3.1e-77 292.4 212 66.0
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 3.1e-77 292.4 218 64.2
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 4.0e-77 292.0 214 65.0
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 5.2e-77 291.6 222 65.8
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 5.2e-77 291.6 222 65.8
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 5.2e-77 291.6 218 64.2
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 5.2e-77 291.6 212 67.0
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 5.2e-77 291.6 222 65.8
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 6.8e-77 291.2 213 64.3
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 8.9e-77 290.8 212 64.6
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 1.2e-76 290.4 219 63.9
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 1.2e-76 290.4 212 65.1
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 1.2e-76 290.4 213 63.4
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 1.5e-76 290.0 222 65.3
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.5e-76 290.0 222 65.3
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 1.5e-76 290.0 210 64.3
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 2.0e-76 289.7 222 65.3
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 2.0e-76 289.7 222 65.3
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 2.0e-76 289.7 213 63.4
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 2.6e-76 289.3 220 64.5
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 2.6e-76 289.3 212 63.2
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 2.6e-76 289.3 213 65.7
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 3.4e-76 288.9 222 64.9
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 3.4e-76 288.9 218 63.3
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 3.4e-76 288.9 213 65.3
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 4.4e-76 288.5 211 62.6
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 5.8e-76 288.1 222 64.9
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 5.8e-76 288.1 221 63.3
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 5.8e-76 288.1 212 66.5
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 5.8e-76 288.1 218 63.3
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 7.5e-76 287.7 213 65.7
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 7.5e-76 287.7 210 63.8
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 1.3e-75 287.0 218 64.7
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 1.3e-75 287.0 211 63.0
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 1.7e-75 286.6 210 63.3
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 2.2e-75 286.2 211 62.6
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 2.2e-75 286.2 213 65.3
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 2.9e-75 285.8 210 63.8
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 4.9e-75 285.0 213 64.8
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 4.9e-75 285.0 210 62.9
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 4.9e-75 285.0 210 62.9
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 6.4e-75 284.6 211 62.6
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 8.3e-75 284.3 210 63.3
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 8.3e-75 284.3 212 63.7
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 8.3e-75 284.3 221 63.8
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.9e-74 283.1 222 64.4
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 3.2e-74 282.3 211 64.5
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 9.2e-74 280.8 212 61.8
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 3.5e-73 278.9 220 62.3
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 4.6e-73 278.5 247 55.9
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 4.6e-73 278.5 221 62.4
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 1.0e-72 277.3 210 66.2
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 6.6e-72 274.6 210 65.7
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 6.6e-72 274.6 210 65.7
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 8.6e-72 274.2 222 60.8
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 2.5e-71 272.7 225 58.7
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 5.6e-71 271.6 259 52.1
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 9.5e-71 270.8 210 62.9
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 9.5e-71 270.8 222 60.8
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 2.8e-70 269.2 218 59.6
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 4.7e-70 268.5 212 61.3
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 6.2e-70 268.1 222 59.5
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 6.2e-70 268.1 210 61.9
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 6.2e-70 268.1 218 61.5
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.8e-69 266.5 224 60.3
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 4.0e-69 265.4 267 53.9
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 6.8e-69 264.6 214 60.7
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 6.8e-69 264.6 222 58.6
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 6.8e-69 264.6 222 58.6
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 1.5e-68 263.5 222 58.1
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 2.0e-68 263.1 222 57.7
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 1.7e-67 260.0 222 56.8
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 1.9e-66 256.5 212 60.4
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 9.2e-66 254.2 213 56.8
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 3.3e-63 245.7 214 58.9
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 9.5e-63 244.2 185 63.2
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.8e-61 240.0 180 61.7
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 2.6e-60 236.1 177 63.3
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 3.2e-50 202.6 220 46.8
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 7.1e-50 201.4 144 63.2
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 4.9e-43 178.7 123 65.0
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 6.4e-43 178.3 127 67.7
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 1.4e-42 177.2 146 58.2
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 1.5e-39 167.2 121 66.1
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 3.6e-38 162.5 121 62.8
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 8.1e-38 161.4 220 41.4
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 7.6e-36 154.8 160 50.6
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 2.9e-35 152.9 189 43.9
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.6e-33 147.1 165 44.8
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 2.7e-33 146.4 193 40.9
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 7.9e-33 144.8 189 42.3
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 5.1e-32 142.1 121 53.7
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 3.3e-31 139.4 126 59.5
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.3e-30 137.5 189 41.8
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.6e-30 137.1 107 64.5
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 3.7e-30 136.0 108 59.3
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 7.6e-28 128.3 194 40.7
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 1.0e-27 127.9 210 38.6
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 1.1e-26 124.4 186 36.6
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.6e-25 120.6 88 62.5
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 1.6e-25 120.6 195 36.9
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 2.7e-25 119.8 86 62.8
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 2.3e-24 116.7 169 38.5
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 7.4e-23 111.7 88 60.2
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 9.6e-23 111.3 89 60.7
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 2.0e-20 103.6 82 62.2
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 4.5e-20 102.4 93 52.7
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 1.8e-16 90.5 65 63.1
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 2.5e-15 86.7 64 57.8
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 5.7e-15 85.5 89 46.1
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 7.4e-15 85.1 81 53.1
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 1.6e-14 84.0 63 68.3
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 3.4e-12 76.3 70 54.3
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 4.5e-12 75.9 65 58.5
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 5.9e-12 75.5 59 61.0
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 2.9e-11 73.2 54 64.8
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 2.9e-11 73.2 49 61.2
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 6.5e-11 72.0 80 48.8
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 5.5e-10 68.9 58 55.2
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 5.5e-10 68.9 61 55.7
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 6.7e-08 62.0 65 49.2
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 6.7e-08 62.0 67 49.3
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 1.1e-07 61.2 46 67.4
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 1.1e-07 61.2 64 50.0
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 3.3e-07 59.7 66 47.0
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 4.4e-07 59.3 59 50.8
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 1.3e-06 57.8 92 42.4
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 1.7e-06 57.4 38 68.4
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 1.7e-06 57.4 54 53.7
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 3.7e-06 56.2 57 54.4


User provided reference genes

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