Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 0.0e+00 1196.4 598 100.0
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 4.1e-230 801.6 500 80.4
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 8.5e-159 564.7 475 58.9
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.5e-158 563.9 451 60.1
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 8.0e-157 558.1 448 61.4
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 3.2e-150 536.2 412 63.3
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 2.7e-149 533.1 414 62.3
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 2.7e-149 533.1 426 62.2
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 1.4e-148 530.8 433 61.0
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 1.8e-148 530.4 403 63.3
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 2.3e-148 530.0 485 55.5
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 3.0e-148 529.6 427 61.6
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 3.0e-148 529.6 477 57.2
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 5.2e-148 528.9 401 63.6
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 5.2e-148 528.9 485 55.5
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 8.8e-148 528.1 419 62.5
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 2.0e-147 526.9 478 57.1
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 2.0e-147 526.9 418 62.4
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 2.6e-147 526.6 401 63.3
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 2.6e-147 526.6 401 63.6
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 3.4e-147 526.2 487 56.9
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 4.4e-147 525.8 489 54.8
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 9.8e-147 524.6 501 56.1
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 9.8e-147 524.6 418 62.4
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 1.7e-146 523.9 407 63.1
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 3.7e-146 522.7 438 59.6
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 3.7e-146 522.7 457 58.4
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 4.8e-146 522.3 403 62.5
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 6.3e-146 521.9 401 63.1
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 6.3e-146 521.9 490 57.1
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 8.3e-146 521.5 398 65.1
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 2.4e-145 520.0 455 58.0
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 4.1e-145 519.2 409 62.8
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 4.1e-145 519.2 402 63.4
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 5.4e-145 518.8 423 60.0
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 5.4e-145 518.8 456 57.5
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 7.0e-145 518.5 401 62.1
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 7.0e-145 518.5 424 59.7
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 9.1e-145 518.1 404 62.1
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 9.1e-145 518.1 406 62.3
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 1.2e-144 517.7 404 62.6
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 1.6e-144 517.3 455 58.7
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 1.6e-144 517.3 478 56.1
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 1.6e-144 517.3 456 57.5
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 1.6e-144 517.3 438 59.4
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 2.0e-144 516.9 401 62.6
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 2.0e-144 516.9 466 57.5
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 3.5e-144 516.2 401 63.3
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 3.5e-144 516.2 404 61.9
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 3.5e-144 516.2 455 56.7
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 3.5e-144 516.2 405 61.7
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 3.5e-144 516.2 490 55.7
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 4.5e-144 515.8 400 62.0
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 4.5e-144 515.8 441 57.4
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 7.7e-144 515.0 401 62.8
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 1.0e-143 514.6 502 55.0
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 1.3e-143 514.2 478 55.6
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 1.7e-143 513.8 497 53.7
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 2.9e-143 513.1 461 56.8
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 3.8e-143 512.7 480 55.0
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 5.0e-143 512.3 405 62.2
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 5.0e-143 512.3 400 61.8
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 8.5e-143 511.5 482 55.0
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 1.1e-142 511.1 456 55.3
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 4.2e-142 509.2 401 62.6
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 4.2e-142 509.2 481 55.1
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 5.5e-142 508.8 393 62.6
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 1.2e-141 507.7 410 61.7
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.6e-141 507.3 399 62.2
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 3.6e-141 506.1 414 60.6
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 4.7e-141 505.8 468 55.3
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 4.7e-141 505.8 410 60.7
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 6.1e-141 505.4 401 61.8
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 1.0e-140 504.6 397 62.5
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 1.4e-140 504.2 427 59.0
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 1.8e-140 503.8 404 61.1
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 1.8e-140 503.8 404 61.1
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 3.0e-140 503.1 434 57.6
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 3.0e-140 503.1 401 61.6
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 3.0e-140 503.1 401 61.6
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 6.8e-140 501.9 469 55.7
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 6.8e-140 501.9 469 55.7
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 1.5e-139 500.7 417 59.2
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 1.5e-139 500.7 417 59.2
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 1.5e-139 500.7 417 59.2
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 1.5e-139 500.7 438 57.5
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 3.4e-139 499.6 420 58.3
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 4.4e-139 499.2 421 58.7
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 4.4e-139 499.2 421 58.7
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 4.4e-139 499.2 462 54.1
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 4.4e-139 499.2 487 54.4
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 4.4e-139 499.2 408 60.3
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 5.7e-139 498.8 449 57.0
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 9.8e-139 498.0 402 60.7
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 9.8e-139 498.0 434 58.5
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 1.3e-138 497.7 375 62.7
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 3.7e-138 496.1 431 56.8
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 3.7e-138 496.1 426 57.5
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 4.9e-138 495.7 493 53.3
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 4.9e-138 495.7 493 53.3
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 7.0e-137 491.9 402 59.0
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 5.0e-135 485.7 401 60.6
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 5.0e-135 485.7 492 52.8
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.6e-135 485.3 492 52.6
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 1.9e-134 483.8 483 54.0
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 1.9e-134 483.8 404 58.9
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 9.5e-134 481.5 363 63.4
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 8.0e-133 478.4 442 55.7
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 8.0e-133 478.4 492 52.0
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 3.0e-132 476.5 370 62.7
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 3.0e-132 476.5 533 50.7
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.7e-130 469.5 493 51.9
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 2.0e-128 463.8 402 58.0
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 1.7e-127 460.7 455 53.4
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 2.5e-126 456.8 586 45.6
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 3.6e-125 453.0 479 50.7
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 1.4e-124 451.1 397 57.7
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 3.1e-124 449.9 365 61.9
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 4.0e-124 449.5 418 56.9
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 5.8e-123 445.7 399 57.4
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 5.8e-123 445.7 365 60.0
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 1.6e-120 437.6 488 49.0
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 3.5e-120 436.4 379 58.3
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 4.6e-120 436.0 347 60.8
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 3.0e-119 433.3 324 65.7
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 8.6e-119 431.8 473 51.4
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 1.4e-116 424.5 428 54.7
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 1.8e-116 424.1 491 48.1
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 2.6e-115 420.2 371 57.4
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 3.4e-115 419.9 379 58.0
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 9.8e-115 418.3 364 57.7
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.1e-113 414.8 504 49.4
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 1.4e-113 414.5 464 50.6
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 3.2e-113 413.3 414 54.3
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 5.4e-113 412.5 317 64.0
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 3.0e-111 406.8 343 60.9
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 1.1e-108 398.3 445 49.4
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.4e-108 397.9 372 56.2
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 9.9e-107 391.7 349 55.9
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 1.3e-106 391.3 494 46.6
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 4.9e-106 389.4 493 47.3
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 4.3e-102 376.3 425 48.2
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 6.2e-101 372.5 451 47.0
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 8.4e-98 362.1 296 61.1
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 4.8e-93 346.3 439 47.2
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 5.3e-92 342.8 314 58.3
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 5.8e-91 339.3 341 53.7
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 2.2e-90 337.4 420 45.5
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 7.9e-88 328.9 423 45.6
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 6.9e-76 289.3 211 64.0
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 1.1e-60 238.8 300 47.0
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 9.1e-60 235.7 230 55.7
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 2.1e-56 224.6 376 33.2
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 3.9e-55 220.3 240 54.2
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.0e-50 205.7 471 31.4
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 1.9e-49 201.4 130 66.9
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 2.4e-44 184.5 163 54.0
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.6e-43 181.8 156 56.4
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 3.5e-43 180.6 246 43.9
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 2.9e-42 177.6 116 65.5
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 1.7e-37 161.8 199 48.7
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.5e-33 148.7 120 60.0
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.3e-23 114.8 216 33.8
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 1.2e-22 112.5 198 33.3
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 2.1e-16 91.7 72 56.9
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 1.2e-14 85.9 49 77.6
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 5.4e-12 77.0 134 41.0
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 1.8e-07 62.0 64 43.8


User provided reference genes

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