Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_24030 Physcomitrium patens HOM05D002114 ORTHO05D002155 0.0e+00 1501.9 816 100.0
Pp3c9_23970 Physcomitrium patens HOM05D002114 ORTHO05D002155 0.0e+00 1451.0 816 97.8
Pp3c15_24190 Physcomitrium patens HOM05D002114 ORTHO05D002155 2.5e-310 1068.5 816 75.2
Pp3c15_22840 Physcomitrium patens HOM05D002114 ORTHO05D002155 5.0e-295 1017.7 822 73.2
Mapoly0005s0127 Marchantia polymorpha HOM05D002114 ORTHO05D002155 7.9e-99 365.9 842 42.5
AagrBONN_evm.TU.Sc2ySwM_344.3002 Anthoceros agrestis HOM05D002114 ORTHO05D002155 2.6e-86 324.3 767 43.2
SEGI_33505 Sequoiadendron giganteum HOM05D002114 ORTHO05D002155 5.6e-52 210.3 836 32.4
SEGI_12878 Sequoiadendron giganteum HOM05D002114 ORTHO05D002155 1.6e-43 182.2 821 31.4
SMO271G0165 Selaginella moellendorffii HOM05D002114 ORTHO05D002155 3.5e-38 164.5 784 30.9
CBR_g3185 Chara braunii HOM05D002114 ORTHO05D002155 1.1e-31 142.9 648 32.4
Nn1g08551 Nelumbo nucifera HOM05D002114 ORTHO05D002155 1.3e-24 119.4 827 29.4
CSS0004121 Camellia sinensis var. sinensis HOM05D002114 ORTHO05D002155 2.1e-22 112.1 784 28.8
TAR624G1393 Trochodendron aralioides HOM05D002114 ORTHO05D002155 3.5e-22 111.3 830 27.7
TAR628G1433 Trochodendron aralioides HOM05D002114 ORTHO05D002155 3.9e-21 107.8 774 28.2
QL12p035256 Quercus lobata HOM05D002114 ORTHO05D002155 5.1e-21 107.5 721 28.8
DCAR_021819 Daucus carota HOM05D002114 ORTHO05D002155 8.7e-21 106.7 826 26.2
Actinidia39060 Actinidia chinensis HOM05D002114 ORTHO05D002155 2.5e-20 105.1 828 27.3
VMungo0647G0374 Vigna mungo HOM05D002114 ORTHO05D002155 2.5e-20 105.1 775 26.5
MD15G1358400 Malus domestica HOM05D002114 ORTHO05D002155 5.6e-20 104.0 704 28.7
MBI06_g01049_MAGBIO Magnolia biondii HOM05D002114 ORTHO05D002155 9.6e-20 103.2 772 28.0
Dinv24257 Davidia involucrata HOM05D002114 ORTHO05D002155 1.6e-19 102.4 784 26.7
Ca_25760_v3 Cicer arietinum L. HOM05D002114 ORTHO05D002155 2.8e-19 101.7 772 27.5
Duzib248G0335 Durio zibethinus HOM05D002114 ORTHO05D002155 3.6e-19 101.3 693 27.3
Lj1g0012616 Lotus japonicus HOM05D002114 ORTHO05D002155 3.6e-19 101.3 775 27.5
PGR042G2981 Punica granatum HOM05D002114 ORTHO05D002155 3.6e-19 101.3 780 26.8
CANSAT25G3390 Cannabis sativa HOM05D002114 ORTHO05D002155 4.7e-19 100.9 764 27.0
Atru.chr13.1319 Acer truncatum HOM05D002114 ORTHO05D002155 8.1e-19 100.1 830 27.0
Atru.chr13.1363 Acer truncatum HOM05D002114 ORTHO05D002155 8.1e-19 100.1 830 27.0
Hma1.2p1_0704F.1_g206810 Hydrangea macrophylla HOM05D002114 ORTHO05D002155 1.1e-18 99.8 721 28.2
CiPaw.06G025100 Carya illinoinensis HOM05D002114 ORTHO05D002155 1.4e-18 99.4 765 28.0
Phvul.008G168200 Phaseolus vulgaris HOM05D002114 ORTHO05D002155 1.4e-18 99.4 772 25.9
TAR376G0284 Trochodendron aralioides HOM05D002114 ORTHO05D002155 1.8e-18 99.0 840 27.0
Phvul.008G168300 Phaseolus vulgaris HOM05D002114 ORTHO05D002155 2.4e-18 98.6 773 25.7
Sabra02G0070100 Salix brachista HOM05D002114 ORTHO05D002155 9.0e-18 96.7 807 26.8
TPR.G30411 Trifolium pratense HOM05D002114 ORTHO05D002155 1.2e-17 96.3 775 27.0
Medtr5g060420 Medicago truncatula HOM05D002114 ORTHO05D002155 1.5e-17 95.9 788 25.9
arahy.Tifrunner.gnm1.ann1.506V44 Arachis hypogaea HOM05D002114 ORTHO05D002155 2.0e-17 95.5 677 27.2
Gorai.005G091900 Gossypium raimondii HOM05D002114 ORTHO05D002155 2.6e-17 95.1 778 27.0
Potri.002G089100 Populus trichocarpa HOM05D002114 ORTHO05D002155 2.6e-17 95.1 842 27.8
arahy.Tifrunner.gnm1.ann1.KNS6CZ Arachis hypogaea HOM05D002114 ORTHO05D002155 5.8e-17 94.0 765 25.9
Duzib093G1968 Durio zibethinus HOM05D002114 ORTHO05D002155 5.8e-17 94.0 778 26.3
Glyma.06G108800 Glycine max HOM05D002114 ORTHO05D002155 5.8e-17 94.0 765 26.0
Psat0s411g0160 Pisum sativum HOM05D002114 ORTHO05D002155 5.8e-17 94.0 773 26.1
arahy.Tifrunner.gnm1.ann1.6TI2WT Arachis hypogaea HOM05D002114 ORTHO05D002155 7.6e-17 93.6 765 25.9
MELO3C022782.2 Cucumis melo HOM05D002114 ORTHO05D002155 9.9e-17 93.2 771 27.4
Cpa.g.sc49.129 Carica papaya HOM05D002114 ORTHO05D002155 1.3e-16 92.8 828 26.2
Thecc.02G041700 Theobroma cacao HOM05D002114 ORTHO05D002155 1.3e-16 92.8 805 26.0
Gohir.D01G167200 Gossypium hirsutum HOM05D002114 ORTHO05D002155 1.7e-16 92.4 778 27.0
Gohir.D02G082000 Gossypium hirsutum HOM05D002114 ORTHO05D002155 1.7e-16 92.4 781 26.9
THA.LOC104813131 Tarenaya hassleriana HOM05D002114 ORTHO05D002155 2.9e-16 91.7 790 27.0
vmacro19904 Vaccinium macrocarpon HOM05D002114 ORTHO05D002155 4.9e-16 90.9 777 26.1
Prupe.1G505900 Prunus persica HOM05D002114 ORTHO05D002155 8.4e-16 90.1 771 26.6
HanXRQChr11g0337571 Helianthus annuus HOM05D002114 ORTHO05D002155 1.1e-15 89.7 775 26.3
Aqoxy5G02445 Aquilegia oxysepala HOM05D002114 ORTHO05D002155 1.4e-15 89.4 825 27.9
Ciclev10000635m.g Citrus clementina HOM05D002114 ORTHO05D002155 1.4e-15 89.4 785 25.7
DCAR_014283 Daucus carota HOM05D002114 ORTHO05D002155 1.4e-15 89.4 710 27.9
arahy.Tifrunner.gnm1.ann1.J4263J Arachis hypogaea HOM05D002114 ORTHO05D002155 1.9e-15 89.0 712 27.4
PSO017G4365 Papaver somniferum HOM05D002114 ORTHO05D002155 1.9e-15 89.0 787 26.3
CiPaw.05G228500 Carya illinoinensis HOM05D002114 ORTHO05D002155 2.4e-15 88.6 776 27.3
Gohir.A01G176400 Gossypium hirsutum HOM05D002114 ORTHO05D002155 2.4e-15 88.6 796 25.8
Gorai.002G207700 Gossypium raimondii HOM05D002114 ORTHO05D002155 2.4e-15 88.6 777 26.1
Glyma.13G084300 Glycine max HOM05D002114 ORTHO05D002155 3.2e-15 88.2 773 25.5
Manes.02G158800 Manihot esculenta HOM05D002114 ORTHO05D002155 3.2e-15 88.2 781 25.6
ClCG03G009150 Citrullus lanatus HOM05D002114 ORTHO05D002155 4.2e-15 87.8 721 28.0
Duzib132G0748 Durio zibethinus HOM05D002114 ORTHO05D002155 4.2e-15 87.8 787 26.7
PSO170G3865 Papaver somniferum HOM05D002114 ORTHO05D002155 1.2e-14 86.3 795 26.8
VMungo0647G0978 Vigna mungo HOM05D002114 ORTHO05D002155 1.2e-14 86.3 774 24.8
Ca_26445_v3 Cicer arietinum L. HOM05D002114 ORTHO05D002155 2.1e-14 85.5 770 24.9
CsaV3_5G023480 Cucumis sativus L. HOM05D002114 ORTHO05D002155 2.1e-14 85.5 771 27.4
Duzib041G0185 Durio zibethinus HOM05D002114 ORTHO05D002155 2.1e-14 85.5 775 26.2
Duzib052G0911 Durio zibethinus HOM05D002114 ORTHO05D002155 2.1e-14 85.5 779 26.3
Dinv26715 Davidia involucrata HOM05D002114 ORTHO05D002155 3.5e-14 84.7 640 27.7
MD08G1173100 Malus domestica HOM05D002114 ORTHO05D002155 3.5e-14 84.7 769 26.0
Sed0018069 Sechium edule HOM05D002114 ORTHO05D002155 3.5e-14 84.7 776 26.7
Sed0020454 Sechium edule HOM05D002114 ORTHO05D002155 3.5e-14 84.7 700 27.3
RcHm_v2.0_Chr7g0240931 Rosa chinensis HOM05D002114 ORTHO05D002155 4.6e-14 84.3 704 27.6
Glyma.14G166100 Glycine max HOM05D002114 ORTHO05D002155 6.0e-14 84.0 776 25.0
Lj1g0019044 Lotus japonicus HOM05D002114 ORTHO05D002155 7.8e-14 83.6 713 27.3
THA.LOC104817001 Tarenaya hassleriana HOM05D002114 ORTHO05D002155 1.0e-13 83.2 774 25.5
Haze_01621 Corylus avellana HOM05D002114 ORTHO05D002155 1.7e-13 82.4 436 28.0
Actinidia29430 Actinidia chinensis HOM05D002114 ORTHO05D002155 3.0e-13 81.6 802 27.1
Manes.18G072900 Manihot esculenta HOM05D002114 ORTHO05D002155 3.0e-13 81.6 712 25.8
Thecc.08G117100 Theobroma cacao HOM05D002114 ORTHO05D002155 3.0e-13 81.6 776 26.3
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 3.9e-13 81.3 776 25.6
Glyma.04G253600 Glycine max HOM05D002114 ORTHO05D002155 3.9e-13 81.3 770 26.1
CDE08G0040 Ceratophyllum demersum HOM05D002114 ORTHO05D002155 6.6e-13 80.5 557 28.5
FAN13G1068 Fragaria x ananassa HOM05D002114 ORTHO05D002155 1.1e-12 79.7 496 30.0
Sabra05G0129600 Salix brachista HOM05D002114 ORTHO05D002155 1.1e-12 79.7 768 25.9
Actinidia03497 Actinidia chinensis HOM05D002114 ORTHO05D002155 1.5e-12 79.3 771 26.2
Migut.B00661 Erythranthe guttata HOM05D002114 ORTHO05D002155 1.5e-12 79.3 505 30.1
TAR381G1077 Trochodendron aralioides HOM05D002114 ORTHO05D002155 1.5e-12 79.3 786 28.1
Lalb_Chr04g0253291 Lupinus albus HOM05D002114 ORTHO05D002155 1.9e-12 79.0 772 25.9
HanXRQChr02g0058831 Helianthus annuus HOM05D002114 ORTHO05D002155 2.5e-12 78.6 448 28.6
THA.LOC104806809 Tarenaya hassleriana HOM05D002114 ORTHO05D002155 2.5e-12 78.6 779 25.7
AL1G51130 Arabidopsis lyrata HOM05D002114 ORTHO05D002155 3.3e-12 78.2 220 35.0
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 3.3e-12 78.2 547 28.0
Psat5g135520 Pisum sativum HOM05D002114 ORTHO05D002155 3.3e-12 78.2 713 26.5
CiPaw.05G042400 Carya illinoinensis HOM05D002114 ORTHO05D002155 5.6e-12 77.4 443 29.6
COL.COLO4_32807 Corchorus olitorius HOM05D002114 ORTHO05D002155 5.6e-12 77.4 524 28.6
Lsat_1_v5_gn_5_109540 Lactuca sativa HOM05D002114 ORTHO05D002155 5.6e-12 77.4 764 25.9
Medtr3g073280 Medicago truncatula HOM05D002114 ORTHO05D002155 5.6e-12 77.4 431 30.9
Potri.005G172100 Populus trichocarpa HOM05D002114 ORTHO05D002155 5.6e-12 77.4 714 27.2
Thhalv10003900m.g Eutrema salsugineum HOM05D002114 ORTHO05D002155 7.3e-12 77.0 605 25.0
FAN08G3544 Fragaria x ananassa HOM05D002114 ORTHO05D002155 7.3e-12 77.0 496 30.4
Gohir.D06G042000 Gossypium hirsutum HOM05D002114 ORTHO05D002155 7.3e-12 77.0 773 25.5
CDE06G1920 Ceratophyllum demersum HOM05D002114 ORTHO05D002155 1.3e-11 76.3 495 27.9
FvH4_5g38960 Fragaria vesca HOM05D002114 ORTHO05D002155 1.3e-11 76.3 496 30.2
Cfa015960 Carpinus fangiana HOM05D002114 ORTHO05D002155 2.8e-11 75.1 415 30.6
Hma1.2p1_0557F.1_g178290 Hydrangea macrophylla HOM05D002114 ORTHO05D002155 2.8e-11 75.1 774 26.2
MBI03_g11140_MAGBIO Magnolia biondii HOM05D002114 ORTHO05D002155 2.8e-11 75.1 744 27.3
Manes.10G132700 Manihot esculenta HOM05D002114 ORTHO05D002155 2.8e-11 75.1 620 26.9
Cc00_g07850 Coffea canephora HOM05D002114 ORTHO05D002155 3.6e-11 74.7 795 25.0
Haze_00522 Corylus avellana HOM05D002114 ORTHO05D002155 3.6e-11 74.7 514 28.6
Gohir.A02G074900 Gossypium hirsutum HOM05D002114 ORTHO05D002155 3.6e-11 74.7 782 26.1
Sp1g31190 Schrenkiella parvula HOM05D002114 ORTHO05D002155 3.6e-11 74.7 612 25.8
TWI56G1477 Tripterygium wilfordii HOM05D002114 ORTHO05D002155 4.8e-11 74.3 835 26.0
Lalb_Chr17g0344021 Lupinus albus HOM05D002114 ORTHO05D002155 6.2e-11 73.9 771 25.0
Gorai.010G047200 Gossypium raimondii HOM05D002114 ORTHO05D002155 8.1e-11 73.6 773 25.4
BcaB07g33077 Brassica carinata HOM05D002114 ORTHO05D002155 1.1e-10 73.2 555 25.8
AT1G36990 Arabidopsis thaliana HOM05D002114 ORTHO05D002155 1.4e-10 72.8 239 33.1
CsaV3_4G028580 Cucumis sativus L. HOM05D002114 ORTHO05D002155 2.4e-10 72.0 562 28.1
ECA236G0807 Erigeron canadensis HOM05D002114 ORTHO05D002155 2.4e-10 72.0 554 27.1
Cc02_g22200 Coffea canephora HOM05D002114 ORTHO05D002155 3.1e-10 71.6 772 25.4
Gohir.D05G270000 Gossypium hirsutum HOM05D002114 ORTHO05D002155 3.1e-10 71.6 617 26.1
Gohir.A06G041100 Gossypium hirsutum HOM05D002114 ORTHO05D002155 4.0e-10 71.2 777 24.8
CARHR034770 Cardamine hirsuta HOM05D002114 ORTHO05D002155 5.3e-10 70.9 349 28.9
Lalb_Chr10g0102001 Lupinus albus HOM05D002114 ORTHO05D002155 6.9e-10 70.5 769 25.5
ECA234G4340 Erigeron canadensis HOM05D002114 ORTHO05D002155 9.0e-10 70.1 681 26.9
Nitab4.5_0002332g0040 Nicotiana tabacum HOM05D002114 ORTHO05D002155 9.0e-10 70.1 793 26.1
Actinidia17471 Actinidia chinensis HOM05D002114 ORTHO05D002155 1.2e-09 69.7 789 25.1
Migut.N01029 Erythranthe guttata HOM05D002114 ORTHO05D002155 1.2e-09 69.7 646 26.5
Aa31LG6G9080 Aethionema arabicum HOM05D002114 ORTHO05D002155 1.5e-09 69.3 482 27.2
FAN04G2397 Fragaria x ananassa HOM05D002114 ORTHO05D002155 1.5e-09 69.3 506 28.7
Nitab4.5_0000051g0060 Nicotiana tabacum HOM05D002114 ORTHO05D002155 1.5e-09 69.3 778 26.9
SGA_v2.0_scaffold28G12028 Striga asiatica HOM05D002114 ORTHO05D002155 4.5e-09 67.8 771 24.4
BcaC08g43755 Brassica carinata HOM05D002114 ORTHO05D002155 5.8e-09 67.4 571 26.6
PGSC0003DMG400030206 Solanum tuberosum HOM05D002114 ORTHO05D002155 5.8e-09 67.4 802 25.7
COL.COLO4_17899 Corchorus olitorius HOM05D002114 ORTHO05D002155 7.6e-09 67.0 787 25.3
Thhalv10028540m.g Eutrema salsugineum HOM05D002114 ORTHO05D002155 7.6e-09 67.0 770 23.0
Sp6g09350 Schrenkiella parvula HOM05D002114 ORTHO05D002155 7.6e-09 67.0 766 23.9
MELO3C010439.2 Cucumis melo HOM05D002114 ORTHO05D002155 9.9e-09 66.6 565 27.6
FAN18G0458 Fragaria x ananassa HOM05D002114 ORTHO05D002155 9.9e-09 66.6 580 27.6
TPR.G32942 Trifolium pratense HOM05D002114 ORTHO05D002155 9.9e-09 66.6 789 25.2
MSTRG.16538 Avicennia marina HOM05D002114 ORTHO05D002155 1.7e-08 65.9 457 28.7
ECA236G2312 Erigeron canadensis HOM05D002114 ORTHO05D002155 1.7e-08 65.9 421 28.3
Lalb_Chr17g0344001 Lupinus albus HOM05D002114 ORTHO05D002155 1.7e-08 65.9 767 24.4
Hma1.2p1_0221F.1_g093190 Hydrangea macrophylla HOM05D002114 ORTHO05D002155 2.9e-08 65.1 766 25.1
Sopen11g008720 Solanum pennellii HOM05D002114 ORTHO05D002155 3.8e-08 64.7 792 25.3
Actinidia23040 Actinidia chinensis HOM05D002114 ORTHO05D002155 4.9e-08 64.3 437 26.8
Eucgr.G00620 Eucalyptus grandis HOM05D002114 ORTHO05D002155 4.9e-08 64.3 415 27.0
HPP92_009362 Vanilla planifolia HOM05D002114 ORTHO05D002155 4.9e-08 64.3 785 25.4
TWI36G1025 Tripterygium wilfordii HOM05D002114 ORTHO05D002155 6.4e-08 63.9 828 25.7
BolC6t36266H Brassica oleracea HOM05D002114 ORTHO05D002155 8.4e-08 63.5 605 26.6
Lsat_1_v5_gn_7_78100 Lactuca sativa HOM05D002114 ORTHO05D002155 8.4e-08 63.5 359 28.4
SalBow6G5473 Salvia bowleyana HOM05D002114 ORTHO05D002155 8.4e-08 63.5 772 25.4
vmacro00796 Vaccinium macrocarpon HOM05D002114 ORTHO05D002155 8.4e-08 63.5 495 26.7
HPP92_011154 Vanilla planifolia HOM05D002114 ORTHO05D002155 8.4e-08 63.5 431 27.1
HanXRQChr16g0513971 Helianthus annuus HOM05D002114 ORTHO05D002155 1.1e-07 63.2 737 26.6
Lalb_Chr17g0343991 Lupinus albus HOM05D002114 ORTHO05D002155 1.4e-07 62.8 778 24.2
QL11p019184 Quercus lobata HOM05D002114 ORTHO05D002155 2.4e-07 62.0 544 27.6
Sc23g0001290 Simmondsia chinensis HOM05D002114 ORTHO05D002155 2.4e-07 62.0 780 25.4
Ah.05g172590 Amaranthus hybridus HOM05D002114 ORTHO05D002155 4.2e-07 61.2 774 25.1
EL10Ac1g00036 Beta vulgaris HOM05D002114 ORTHO05D002155 4.2e-07 61.2 655 27.0
C06p11320 Brassica napus HOM05D002114 ORTHO05D002155 4.2e-07 61.2 564 25.7
PGR042G3890 Punica granatum HOM05D002114 ORTHO05D002155 4.2e-07 61.2 125 40.0
SalBow1G6985 Salvia bowleyana HOM05D002114 ORTHO05D002155 7.1e-07 60.5 772 25.3
Sed0025403 Sechium edule HOM05D002114 ORTHO05D002155 7.1e-07 60.5 525 26.9
BcaB07g33990 Brassica carinata HOM05D002114 ORTHO05D002155 9.3e-07 60.1 779 24.1
Gorai.009G282700 Gossypium raimondii HOM05D002114 ORTHO05D002155 9.3e-07 60.1 623 24.9
SalBow7G2503 Salvia bowleyana HOM05D002114 ORTHO05D002155 9.3e-07 60.1 450 28.0
Solyc11g013760.2 Solanum lycopersicum HOM05D002114 ORTHO05D002155 9.3e-07 60.1 792 25.3
ClCG11G015500 Citrullus lanatus HOM05D002114 ORTHO05D002155 1.2e-06 59.7 585 27.4
CAN.G935.3 Capsicum annuum HOM05D002114 ORTHO05D002155 1.6e-06 59.3 798 25.7
DCAR_001815 Daucus carota HOM05D002114 ORTHO05D002155 1.6e-06 59.3 772 26.3
Rhsim11G0065100 Rhododendron simsii HOM05D002114 ORTHO05D002155 2.7e-06 58.5 767 24.1
Eucgr.F04377 Eucalyptus grandis HOM05D002114 ORTHO05D002155 3.5e-06 58.2 565 25.8
Hund27059 Selenicereus undatus HOM05D002114 ORTHO05D002155 3.5e-06 58.2 551 29.2
EL10Ac1g01837 Beta vulgaris HOM05D002114 ORTHO05D002155 4.6e-06 57.8 412 28.4


User provided reference genes

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