Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_23740 Physcomitrium patens HOM05D006075 ORTHO05D007527 8.1e-280 966.5 496 100.0
Mapoly0001s0316 Marchantia polymorpha HOM05D006075 ORTHO05D007527 3.2e-119 433.0 483 49.7
SEGI_27555 Sequoiadendron giganteum HOM05D006075 ORTHO05D007527 9.3e-119 431.4 472 50.2
Nn6g34229 Nelumbo nucifera HOM05D006075 ORTHO05D007527 8.7e-117 424.9 471 49.5
QL12p017421 Quercus lobata HOM05D006075 ORTHO05D007527 8.7e-117 424.9 472 50.2
Potri.001G109200 Populus trichocarpa HOM05D006075 ORTHO05D007527 4.8e-115 419.1 466 49.8
Manes.01G066100 Manihot esculenta HOM05D006075 ORTHO05D007527 2.4e-114 416.8 466 49.6
GSVIVG01019817001 Vitis vinifera HOM05D006075 ORTHO05D007527 4.1e-114 416.0 467 48.2
Migut.E01290 Erythranthe guttata HOM05D006075 ORTHO05D007527 5.3e-114 415.6 466 47.9
BcaC04g22472 Brassica carinata HOM05D006075 ORTHO05D007527 1.5e-113 414.1 466 48.7
MSTRG.13821 Avicennia marina HOM05D006075 ORTHO05D007527 3.4e-113 412.9 466 47.6
BcaB07g31383 Brassica carinata HOM05D006075 ORTHO05D007527 5.9e-113 412.1 464 48.9
C09p18910 Brassica napus HOM05D006075 ORTHO05D007527 5.9e-113 412.1 467 48.6
TPR.G19222 Trifolium pratense HOM05D006075 ORTHO05D007527 5.9e-113 412.1 471 47.8
Atru.chr9.1549 Acer truncatum HOM05D006075 ORTHO05D007527 1.3e-112 411.0 471 48.2
CANSAT21G0515 Cannabis sativa HOM05D006075 ORTHO05D007527 2.9e-112 409.8 468 48.3
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 5.0e-112 409.1 468 47.9
Phvul.003G211900 Phaseolus vulgaris HOM05D006075 ORTHO05D007527 5.0e-112 409.1 459 47.9
Oeu011664.1 Olea europaea HOM05D006075 ORTHO05D007527 8.5e-112 408.3 466 47.9
Sp2g01480 Schrenkiella parvula HOM05D006075 ORTHO05D007527 8.5e-112 408.3 465 49.7
TPR.G23260 Trifolium pratense HOM05D006075 ORTHO05D007527 8.5e-112 408.3 471 46.9
Cc08_g14070 Coffea canephora HOM05D006075 ORTHO05D007527 1.1e-111 407.9 466 48.7
Glyma.17G131000 Glycine max HOM05D006075 ORTHO05D007527 1.1e-111 407.9 473 47.6
RcHm_v2.0_Chr7g0199111 Rosa chinensis HOM05D006075 ORTHO05D007527 1.1e-111 407.9 468 50.0
BolC9t54793H Brassica oleracea HOM05D006075 ORTHO05D007527 1.9e-111 407.1 469 48.6
A09p15680 Brassica napus HOM05D006075 ORTHO05D007527 3.2e-111 406.4 467 48.6
BraA09t37209Z Brassica rapa HOM05D006075 ORTHO05D007527 3.2e-111 406.4 467 48.6
TWI81G0173 Tripterygium wilfordii HOM05D006075 ORTHO05D007527 3.2e-111 406.4 473 49.0
CSS0042428 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 9.3e-111 404.8 453 48.6
Ciclev10019953m.g Citrus clementina HOM05D006075 ORTHO05D007527 9.3e-111 404.8 466 48.5
Dinv37681 Davidia involucrata HOM05D006075 ORTHO05D007527 1.2e-110 404.4 459 48.4
Thhalv10023435m.g Eutrema salsugineum HOM05D006075 ORTHO05D007527 1.2e-110 404.4 464 50.0
CiPaw.11G140500 Carya illinoinensis HOM05D006075 ORTHO05D007527 1.6e-110 404.1 481 48.2
Carub.0002s0185 Capsella rubella HOM05D006075 ORTHO05D007527 2.1e-110 403.7 487 47.8
PSO478G2556 Papaver somniferum HOM05D006075 ORTHO05D007527 2.1e-110 403.7 488 46.1
THA.LOC104818186 Tarenaya hassleriana HOM05D006075 ORTHO05D007527 2.1e-110 403.7 478 49.2
Lalb_Chr16g0389751 Lupinus albus HOM05D006075 ORTHO05D007527 2.7e-110 403.3 459 46.2
PSO782G2103 Papaver somniferum HOM05D006075 ORTHO05D007527 3.6e-110 402.9 488 46.1
HPP92_001310 Vanilla planifolia HOM05D006075 ORTHO05D007527 3.6e-110 402.9 480 46.9
FAN18G0544 Fragaria x ananassa HOM05D006075 ORTHO05D007527 4.6e-110 402.5 466 49.1
AL2G12410 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 6.1e-110 402.1 476 47.9
Lj4g0025720 Lotus japonicus HOM05D006075 ORTHO05D007527 6.1e-110 402.1 471 46.9
FAN08G0877 Fragaria x ananassa HOM05D006075 ORTHO05D007527 7.9e-110 401.7 466 49.1
FAN04G1557 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.8e-109 400.6 466 48.9
AT1G63110 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 2.3e-109 400.2 485 48.0
Gohir.A01G010200 Gossypium hirsutum HOM05D006075 ORTHO05D007527 3.0e-109 399.8 464 48.1
Medtr4g102820 Medicago truncatula HOM05D006075 ORTHO05D007527 3.0e-109 399.8 466 46.4
Sabra01G0082500 Salix brachista HOM05D006075 ORTHO05D007527 6.7e-109 398.7 504 45.6
Lalb_Chr09g0333281 Lupinus albus HOM05D006075 ORTHO05D007527 2.5e-108 396.7 472 46.6
Prupe.5G091900 Prunus persica HOM05D006075 ORTHO05D007527 3.3e-108 396.4 467 48.6
Rhsim07G0094000 Rhododendron simsii HOM05D006075 ORTHO05D007527 4.3e-108 396.0 482 47.3
MELO3C005634.2 Cucumis melo HOM05D006075 ORTHO05D007527 5.7e-108 395.6 468 48.3
SMO270G0127 Selaginella moellendorffii HOM05D006075 ORTHO05D007527 9.7e-108 394.8 486 47.7
Thecc.02G127300 Theobroma cacao HOM05D006075 ORTHO05D007527 9.7e-108 394.8 464 47.8
Psat4g067760 Pisum sativum HOM05D006075 ORTHO05D007527 1.6e-107 394.0 464 45.7
Gohir.D01G009800 Gossypium hirsutum HOM05D006075 ORTHO05D007527 2.2e-107 393.7 464 47.8
HanXRQChr03g0085661 Helianthus annuus HOM05D006075 ORTHO05D007527 2.2e-107 393.7 467 47.3
Gorai.002G011900 Gossypium raimondii HOM05D006075 ORTHO05D007527 3.7e-107 392.9 464 47.6
CsaV3_5G003210 Cucumis sativus L. HOM05D006075 ORTHO05D007527 4.8e-107 392.5 466 48.7
Sed0007766 Sechium edule HOM05D006075 ORTHO05D007527 6.3e-107 392.1 466 48.9
Psat1g082240 Pisum sativum HOM05D006075 ORTHO05D007527 8.2e-107 391.7 476 44.3
VMungo1215G1399 Vigna mungo HOM05D006075 ORTHO05D007527 1.4e-106 391.0 428 48.6
Aa31LG2G590 Aethionema arabicum HOM05D006075 ORTHO05D007527 1.8e-106 390.6 505 45.7
MD06G1073700 Malus domestica HOM05D006075 ORTHO05D007527 3.1e-106 389.8 473 47.4
Os02g0688900 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 6.9e-106 388.7 464 46.3
CAN.G981.23 Capsicum annuum HOM05D006075 ORTHO05D007527 9.1e-106 388.3 474 46.2
MD04G1066500 Malus domestica HOM05D006075 ORTHO05D007527 1.5e-105 387.5 453 49.7
arahy.Tifrunner.gnm1.ann1.M2EVQD Arachis hypogaea HOM05D006075 ORTHO05D007527 7.7e-105 385.2 471 44.8
ECA240G3011 Erigeron canadensis HOM05D006075 ORTHO05D007527 7.7e-105 385.2 470 47.2
Sopen08g028750 Solanum pennellii HOM05D006075 ORTHO05D007527 3.8e-104 382.9 467 46.3
Lj2A193G48 Lonicera japonica HOM05D006075 ORTHO05D007527 5.0e-104 382.5 447 47.2
Solyc08g080420.4 Solanum lycopersicum HOM05D006075 ORTHO05D007527 1.4e-103 380.9 467 46.0
arahy.Tifrunner.gnm1.ann1.S8HR28 Arachis hypogaea HOM05D006075 ORTHO05D007527 8.8e-101 371.7 473 44.6
Lsat_1_v5_gn_6_87521 Lactuca sativa HOM05D006075 ORTHO05D007527 1.1e-100 371.3 449 46.5
CDE11G0531 Ceratophyllum demersum HOM05D006075 ORTHO05D007527 2.0e-100 370.5 477 45.1
SGA_v2.0_scaffold385G50455 Striga asiatica HOM05D006075 ORTHO05D007527 1.4e-98 364.4 472 44.5
EL10Ac5g12736 Beta vulgaris HOM05D006075 ORTHO05D007527 1.0e-96 358.2 449 45.9
Carub.0001s1243 Capsella rubella HOM05D006075 ORTHO05D007527 1.7e-96 357.5 467 44.5
vmacro13924 Vaccinium macrocarpon HOM05D006075 ORTHO05D007527 5.0e-96 355.9 486 43.8
PGR042G3166 Punica granatum HOM05D006075 ORTHO05D007527 3.2e-95 353.2 478 42.9
FvH4_5g01570 Fragaria vesca HOM05D006075 ORTHO05D007527 7.2e-95 352.1 429 47.3
AT1G12730 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 1.2e-94 351.3 472 44.7
SalBow1G6580 Salvia bowleyana HOM05D006075 ORTHO05D007527 2.7e-94 350.1 570 38.2
Actinidia05225 Actinidia chinensis HOM05D006075 ORTHO05D007527 9.1e-90 335.1 464 42.0
AagrBONN_evm.TU.Sc2ySwM_117.1004 Anthoceros agrestis HOM05D006075 ORTHO05D007527 1.7e-88 330.9 383 48.6
FAN13G2280 Fragaria x ananassa HOM05D006075 ORTHO05D007527 3.8e-88 329.7 392 48.0
unitig_744.g24646 Utricularia gibba HOM05D006075 ORTHO05D007527 1.1e-87 328.2 466 42.7
ATR0322G053 Amborella trichopoda HOM05D006075 ORTHO05D007527 2.5e-87 327.0 336 50.6
Peaxi162Scf00714g00528 Petunia axillaris HOM05D006075 ORTHO05D007527 3.0e-85 320.1 548 39.6
HanXRQChr11g0323321 Helianthus annuus HOM05D006075 ORTHO05D007527 5.7e-84 315.8 468 41.7
TAR629G0535 Trochodendron aralioides HOM05D006075 ORTHO05D007527 5.7e-84 315.8 357 47.3
FAN08G0114 Fragaria x ananassa HOM05D006075 ORTHO05D007527 3.7e-83 313.2 418 45.2
Sc01g0008740 Simmondsia chinensis HOM05D006075 ORTHO05D007527 6.3e-83 312.4 375 46.4
TAR629G3145 Trochodendron aralioides HOM05D006075 ORTHO05D007527 1.8e-82 310.8 385 45.5
PSO478G1113 Papaver somniferum HOM05D006075 ORTHO05D007527 1.6e-81 307.8 334 48.5
ClCG01G003090 Citrullus lanatus HOM05D006075 ORTHO05D007527 5.9e-81 305.8 477 41.5
AL1G24320 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 7.7e-81 305.4 442 42.5
Manes.02G026900 Manihot esculenta HOM05D006075 ORTHO05D007527 6.1e-78 295.8 512 38.9
CARHR013020 Cardamine hirsuta HOM05D006075 ORTHO05D007527 8.3e-75 285.4 380 43.4
Glyma.05G049100 Glycine max HOM05D006075 ORTHO05D007527 8.6e-72 275.4 332 46.7
COL.COLO4_32412 Corchorus olitorius HOM05D006075 ORTHO05D007527 2.1e-70 270.8 482 38.8
PGSC0003DMG400003033 Solanum tuberosum HOM05D006075 ORTHO05D007527 1.2e-68 265.0 446 37.4
Nitab4.5_0002853g0070 Nicotiana tabacum HOM05D006075 ORTHO05D007527 4.9e-67 259.6 503 36.2
Duzib052G1148 Durio zibethinus HOM05D006075 ORTHO05D007527 2.9e-64 250.4 467 38.3
Nitab4.5_0016932g0010 Nicotiana tabacum HOM05D006075 ORTHO05D007527 5.0e-64 249.6 467 36.6
CBR_g17923 Chara braunii HOM05D006075 ORTHO05D007527 8.6e-64 248.8 756 28.3
Haze_08940 Corylus avellana HOM05D006075 ORTHO05D007527 8.6e-64 248.8 282 48.9
Sed0016840 Sechium edule HOM05D006075 ORTHO05D007527 2.8e-62 243.8 278 48.6
CARHR048400 Cardamine hirsuta HOM05D006075 ORTHO05D007527 3.2e-58 230.3 322 42.9
Ah.12g057560 Amaranthus hybridus HOM05D006075 ORTHO05D007527 1.6e-54 218.0 454 34.6
Zm00001eb251050 Zea mays HOM05D006075 ORTHO05D007527 2.3e-53 214.2 323 39.3
Hund14727 Selenicereus undatus HOM05D006075 ORTHO05D007527 1.3e-51 208.4 469 33.3
Dinv39003 Davidia involucrata HOM05D006075 ORTHO05D007527 9.5e-39 165.6 194 48.5
MCO15G123 Micromonas commoda HOM05D006075 ORTHO05D007527 5.2e-37 159.8 458 29.3
Os01g0870201 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 5.8e-36 156.4 384 30.7
Cpa.g.sc74.79 Carica papaya HOM05D006075 ORTHO05D007527 7.6e-36 156.0 304 35.9
AUR62017286 Chenopodium quinoa HOM05D006075 ORTHO05D007527 6.9e-29 132.9 178 47.8
Ca_20251_v3 Cicer arietinum L. HOM05D006075 ORTHO05D007527 4.9e-27 126.7 157 45.9
CSS0009197 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 1.7e-24 118.2 432 27.1
Pp3c15_22645 Physcomitrium patens HOM05D006075 ORTHO05D007527 2.4e-21 107.8 106 57.5
PRCOL_00005762 Prasinoderma coloniale HOM05D006075 ORTHO05D007527 4.5e-20 103.6 522 23.6
TAR636G1294 Trochodendron aralioides HOM05D006075 ORTHO05D007527 5.8e-20 103.2 139 42.4
AUR62010644 Chenopodium quinoa HOM05D006075 ORTHO05D007527 1.2e-17 95.5 178 38.8
TAR636G2798 Trochodendron aralioides HOM05D006075 ORTHO05D007527 9.6e-15 85.9 71 57.7
C09p15950 Brassica napus HOM05D006075 ORTHO05D007527 8.1e-14 82.8 98 44.9
Cre03.g150400 Chlamydomonas reinhardtii HOM05D006075 ORTHO05D007527 1.3e-11 75.5 153 29.4
ATR0322G060 Amborella trichopoda HOM05D006075 ORTHO05D007527 2.2e-11 74.7 71 53.5
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.2e-10 70.9 71 50.7
BolC9t54506H Brassica oleracea HOM05D006075 ORTHO05D007527 1.6e-09 68.6 115 38.3


User provided reference genes

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