Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 0.0e+00 1778.8 926 100.0
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 0.0e+00 1778.8 926 100.0
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 4.2e-173 612.8 1066 41.5
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 2.3e-126 457.6 952 37.5
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 2.5e-125 454.1 963 38.2
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 4.0e-123 446.8 960 35.0
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 4.4e-122 443.4 922 36.8
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 4.9e-121 439.9 807 38.9
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 1.9e-120 438.0 806 37.7
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 4.1e-120 436.8 953 36.0
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 4.1e-120 436.8 1029 34.5
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 2.1e-119 434.5 824 38.0
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.7e-119 434.1 959 35.6
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 3.5e-119 433.7 804 37.6
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 6.0e-119 433.0 954 35.7
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 6.0e-119 433.0 978 35.8
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 1.0e-118 432.2 819 37.5
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.7e-118 431.4 843 37.6
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.1e-117 428.7 971 35.9
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 5.6e-117 426.4 808 37.7
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 9.6e-117 425.6 803 38.5
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 9.6e-117 425.6 798 37.6
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 1.2e-116 425.2 796 37.8
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 2.8e-116 424.1 812 38.4
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 2.8e-116 424.1 977 35.3
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 3.6e-116 423.7 975 35.5
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 8.1e-116 422.5 812 38.4
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 8.1e-116 422.5 806 38.8
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 8.1e-116 422.5 815 37.9
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 1.4e-115 421.8 804 37.1
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 1.8e-115 421.4 799 37.3
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 5.2e-115 419.9 969 34.9
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.2e-114 418.7 966 36.2
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 1.2e-114 418.7 984 34.5
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 2.6e-114 417.5 798 36.2
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 2.6e-114 417.5 971 35.5
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 3.4e-114 417.2 964 34.3
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 4.4e-114 416.8 977 35.2
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 5.8e-114 416.4 974 35.7
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 7.6e-114 416.0 821 36.9
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 7.6e-114 416.0 805 36.0
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 1.3e-113 415.2 854 36.8
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 4.9e-113 413.3 983 35.2
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 1.1e-112 412.1 814 36.9
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 2.4e-112 411.0 948 35.9
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 2.4e-112 411.0 1036 34.2
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 2.4e-112 411.0 876 35.3
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 4.2e-112 410.2 799 36.7
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 5.4e-112 409.8 815 37.3
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 7.1e-112 409.5 817 37.1
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 2.7e-111 407.5 864 35.4
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 4.6e-111 406.8 817 37.3
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 7.8e-111 406.0 797 36.3
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.7e-110 404.8 796 37.2
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.7e-110 404.8 973 34.2
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.3e-110 404.4 962 35.3
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 3.9e-110 403.7 987 34.3
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 1.1e-109 402.1 958 35.6
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 1.1e-109 402.1 981 33.6
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 1.5e-109 401.7 808 37.4
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 1.5e-109 401.7 816 36.6
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.9e-109 401.4 831 36.2
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.5e-109 401.0 962 35.7
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 3.3e-109 400.6 844 36.6
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 5.6e-109 399.8 821 36.2
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 7.3e-109 399.4 968 34.7
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 9.6e-109 399.1 962 35.4
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.3e-108 398.7 962 35.6
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 2.1e-108 397.9 950 34.3
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 8.1e-108 396.0 866 34.4
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 8.1e-108 396.0 823 36.6
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 1.1e-107 395.6 976 33.0
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 1.8e-107 394.8 975 34.5
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 1.8e-107 394.8 969 34.0
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 4.0e-107 393.7 829 34.7
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 4.0e-107 393.7 979 33.4
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 9.0e-107 392.5 1021 32.6
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 1.2e-106 392.1 960 34.0
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 2.0e-106 391.3 944 34.4
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.3e-105 388.7 947 34.3
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.3e-105 388.7 1020 32.6
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.3e-105 388.7 994 33.0
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 1.3e-105 388.7 1130 31.8
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 1.3e-105 388.7 1030 31.7
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 1.7e-105 388.3 980 32.9
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 4.9e-105 386.7 811 36.4
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 4.9e-105 386.7 811 36.4
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.1e-104 385.6 994 33.0
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 1.9e-104 384.8 965 33.6
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 1.9e-104 384.8 793 36.9
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 2.4e-104 384.4 894 32.8
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 2.4e-104 384.4 801 35.6
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 5.4e-104 383.3 970 34.0
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 5.4e-104 383.3 1003 32.7
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 3.5e-103 380.6 817 37.2
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 1.0e-102 379.0 783 35.0
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 1.0e-102 379.0 1048 32.6
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 1.3e-102 378.6 839 36.0
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.7e-102 378.3 986 34.0
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.3e-102 377.9 826 35.2
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 3.0e-102 377.5 829 35.5
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 1.1e-101 375.6 802 34.8
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 2.5e-101 374.4 828 35.5
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 2.5e-101 374.4 1050 32.4
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 4.3e-101 373.6 806 34.0
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 2.8e-100 370.9 1068 31.3
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 6.2e-100 369.8 784 34.1
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.1e-99 369.0 822 35.6
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 2.4e-99 367.9 844 33.4
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 6.9e-99 366.3 868 33.1
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 2.0e-98 364.8 756 37.3
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 3.4e-98 364.0 838 35.4
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 3.4e-98 364.0 925 31.6
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 5.8e-98 363.2 886 33.5
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.3e-97 362.1 987 33.2
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.7e-97 361.7 859 34.2
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 1.7e-97 361.7 951 33.9
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.1e-96 359.0 805 35.4
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 1.1e-96 359.0 965 33.4
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 9.3e-96 355.9 800 34.0
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.7e-95 354.4 836 34.1
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.7e-95 354.4 836 34.1
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 1.0e-94 352.4 877 33.3
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.8e-94 351.7 810 34.2
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 2.3e-94 351.3 972 32.2
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 6.7e-94 349.7 1007 32.2
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 7.4e-93 346.3 837 34.6
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 1.7e-89 335.1 775 35.0
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 4.1e-83 313.9 834 33.2
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 2.9e-81 307.8 842 31.8
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.4e-75 288.9 755 31.7
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 2.5e-72 278.1 973 30.7
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 9.4e-72 276.2 718 33.1
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 1.0e-70 272.7 967 30.7
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 2.6e-61 241.5 627 33.0
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 5.5e-56 223.8 338 43.8
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 1.4e-54 219.2 244 51.6
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 2.9e-49 201.4 403 37.7
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 4.2e-48 197.6 553 33.3
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 2.4e-43 181.8 317 38.8
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.6e-39 167.9 297 34.7
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 3.7e-36 157.9 243 40.7
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 1.8e-30 139.0 348 35.3
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 5.7e-29 134.0 359 29.5
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 5.9e-26 124.0 141 50.4
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.0e-25 121.7 379 32.5
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 3.3e-24 118.2 100 58.0
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 8.9e-22 110.2 92 57.6
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 1.1e-19 103.2 101 53.5
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 1.9e-19 102.4 269 29.4
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 3.5e-18 98.2 85 57.6
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 2.5e-16 92.0 148 35.8
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 2.1e-15 89.0 96 51.0
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 4.7e-15 87.8 112 42.9
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 6.2e-15 87.4 89 47.2
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 6.8e-14 84.0 113 44.2
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 1.5e-13 82.8 63 60.3
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 3.4e-13 81.6 64 62.5
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 4.4e-13 81.3 134 42.5
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 9.8e-13 80.1 70 55.7
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 2.9e-12 78.6 62 59.7
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 2.9e-12 78.6 155 36.1
MCO02G174 Micromonas commoda HOM05D003782 ORTHO05D004361 6.0e-10 70.9 309 25.6
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 7.8e-10 70.5 75 40.0
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.1e-08 66.6 134 37.3
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 3.3e-08 65.1 126 32.5
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.3e-08 64.7 60 58.3
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 7.3e-08 63.9 60 50.0
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 2.8e-07 62.0 61 44.3


User provided reference genes

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