Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_20180 Physcomitrium patens HOM05D006399 ORTHO05D007988 2.5e-280 968.0 453 100.0
Pp3c2_5840 Physcomitrium patens HOM05D006399 ORTHO05D007988 3.7e-146 522.3 246 99.2
AagrBONN_evm.TU.Sc2ySwM_362.1792 Anthoceros agrestis HOM05D006399 ORTHO05D007988 4.4e-115 419.1 380 53.9
SEGI_31378 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 5.7e-115 418.7 382 52.9
Pp3c11_9510 Physcomitrium patens HOM05D006399 ORTHO05D007988 9.2e-89 331.6 372 46.0
SEGI_07124 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 4.1e-73 279.6 312 45.5
AagrBONN_evm.TU.Sc2ySwM_362.1561 Anthoceros agrestis HOM05D006399 ORTHO05D007988 1.1e-68 265.0 288 46.9
Pp3c5_14870 Physcomitrium patens HOM05D006399 ORTHO05D007988 6.9e-44 182.6 426 32.6
Dinv34130 Davidia involucrata HOM05D006399 ORTHO05D007988 9.3e-41 172.2 359 32.3
CAN.G1335.8 Capsicum annuum HOM05D006399 ORTHO05D007988 1.6e-40 171.4 469 30.5
Dinv07949 Davidia involucrata HOM05D006399 ORTHO05D007988 2.7e-40 170.6 355 32.7
SEGI_38638 Sequoiadendron giganteum HOM05D006399 ORTHO05D007988 2.7e-40 170.6 415 33.0
FAN22G0994 Fragaria x ananassa HOM05D006399 ORTHO05D007988 3.5e-40 170.2 401 31.9
FAN07G2088 Fragaria x ananassa HOM05D006399 ORTHO05D007988 4.6e-40 169.9 360 33.3
Migut.L01261 Erythranthe guttata HOM05D006399 ORTHO05D007988 1.0e-39 168.7 379 32.7
TAR622G1196 Trochodendron aralioides HOM05D006399 ORTHO05D007988 1.8e-39 167.9 389 32.4
FvH4_4g30990 Fragaria vesca HOM05D006399 ORTHO05D007988 2.3e-39 167.5 360 33.1
Manes.01G033900 Manihot esculenta HOM05D006399 ORTHO05D007988 2.3e-39 167.5 366 33.3
ATR0564G327 Amborella trichopoda HOM05D006399 ORTHO05D007988 3.0e-39 167.2 371 34.0
CDE06G2322 Ceratophyllum demersum HOM05D006399 ORTHO05D007988 5.1e-39 166.4 375 31.7
Aqoxy3G00634 Aquilegia oxysepala HOM05D006399 ORTHO05D007988 1.5e-38 164.9 421 31.1
FAN12G2051 Fragaria x ananassa HOM05D006399 ORTHO05D007988 2.5e-38 164.1 360 32.8
PSO210G1214 Papaver somniferum HOM05D006399 ORTHO05D007988 3.3e-38 163.7 374 32.6
Atru.chr11.1742 Acer truncatum HOM05D006399 ORTHO05D007988 4.3e-38 163.3 375 31.5
RcHm_v2.0_Chr4g0439361 Rosa chinensis HOM05D006399 ORTHO05D007988 5.6e-38 162.9 379 32.2
Prupe.1G278300 Prunus persica HOM05D006399 ORTHO05D007988 7.4e-38 162.5 426 31.7
Cfa008945 Carpinus fangiana HOM05D006399 ORTHO05D007988 1.6e-37 161.4 376 31.4
FAN07G1460 Fragaria x ananassa HOM05D006399 ORTHO05D007988 1.6e-37 161.4 392 32.4
QL12p039367 Quercus lobata HOM05D006399 ORTHO05D007988 1.6e-37 161.4 375 31.7
unitig_699.g19915 Utricularia gibba HOM05D006399 ORTHO05D007988 1.6e-37 161.4 435 32.0
MD16G1068900 Malus domestica HOM05D006399 ORTHO05D007988 2.1e-37 161.0 403 32.8
Actinidia31971 Actinidia chinensis HOM05D006399 ORTHO05D007988 2.8e-37 160.6 395 31.9
HanXRQChr15g0476901 Helianthus annuus HOM05D006399 ORTHO05D007988 4.8e-37 159.8 389 31.6
Nn3g17286 Nelumbo nucifera HOM05D006399 ORTHO05D007988 4.8e-37 159.8 397 31.2
Nn3g17302 Nelumbo nucifera HOM05D006399 ORTHO05D007988 4.8e-37 159.8 397 31.2
Lsat_1_v5_gn_3_51980 Lactuca sativa HOM05D006399 ORTHO05D007988 6.2e-37 159.5 380 32.4
Nitab4.5_0004661g0030 Nicotiana tabacum HOM05D006399 ORTHO05D007988 6.2e-37 159.5 422 30.8
Nitab4.5_0000145g0020 Nicotiana tabacum HOM05D006399 ORTHO05D007988 8.2e-37 159.1 424 31.1
Peaxi162Scf00222g00816 Petunia axillaris HOM05D006399 ORTHO05D007988 1.1e-36 158.7 403 32.0
FvH4_4g30980 Fragaria vesca HOM05D006399 ORTHO05D007988 1.8e-36 157.9 392 32.7
PGR102G0590 Punica granatum HOM05D006399 ORTHO05D007988 1.8e-36 157.9 376 32.2
QL93p1999_0143 Quercus lobata HOM05D006399 ORTHO05D007988 2.4e-36 157.5 375 31.5
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 3.1e-36 157.1 391 32.7
QL03p069077 Quercus lobata HOM05D006399 ORTHO05D007988 3.1e-36 157.1 375 31.5
Haze_11971 Corylus avellana HOM05D006399 ORTHO05D007988 4.0e-36 156.8 376 31.9
Eucgr.G02484 Eucalyptus grandis HOM05D006399 ORTHO05D007988 6.9e-36 156.0 378 31.5
FAN12G0639 Fragaria x ananassa HOM05D006399 ORTHO05D007988 6.9e-36 156.0 392 32.4
Rhsim12G0079500 Rhododendron simsii HOM05D006399 ORTHO05D007988 1.2e-35 155.2 378 32.0
Solyc05g007680.1 Solanum lycopersicum HOM05D006399 ORTHO05D007988 1.2e-35 155.2 374 33.7
PGSC0003DMG400018440 Solanum tuberosum HOM05D006399 ORTHO05D007988 1.2e-35 155.2 379 33.2
CANSAT64G0537 Cannabis sativa HOM05D006399 ORTHO05D007988 2.0e-35 154.5 408 31.9
CiPaw.06G087600 Carya illinoinensis HOM05D006399 ORTHO05D007988 2.6e-35 154.1 377 31.8
Haze_11970 Corylus avellana HOM05D006399 ORTHO05D007988 2.6e-35 154.1 421 30.6
Lj2g0004295 Lotus japonicus HOM05D006399 ORTHO05D007988 2.6e-35 154.1 494 29.1
Manes.05G105200 Manihot esculenta HOM05D006399 ORTHO05D007988 2.6e-35 154.1 421 30.9
Actinidia17748 Actinidia chinensis HOM05D006399 ORTHO05D007988 4.5e-35 153.3 411 31.6
Potri.008G089800 Populus trichocarpa HOM05D006399 ORTHO05D007988 5.8e-35 152.9 402 30.8
Sopen05g003560 Solanum pennellii HOM05D006399 ORTHO05D007988 7.6e-35 152.5 378 33.6
Cc00_g16610 Coffea canephora HOM05D006399 ORTHO05D007988 1.0e-34 152.1 464 28.2
TPR.G34705 Trifolium pratense HOM05D006399 ORTHO05D007988 1.0e-34 152.1 375 31.5
QL12p039232 Quercus lobata HOM05D006399 ORTHO05D007988 1.3e-34 151.8 386 30.6
CSS0033869 Camellia sinensis var. sinensis HOM05D006399 ORTHO05D007988 1.7e-34 151.4 381 32.3
RcHm_v2.0_Chr4g0439341 Rosa chinensis HOM05D006399 ORTHO05D007988 1.7e-34 151.4 392 31.1
GSVIVG01005154001 Vitis vinifera HOM05D006399 ORTHO05D007988 1.7e-34 151.4 361 31.3
Atru.chr11.1740 Acer truncatum HOM05D006399 ORTHO05D007988 2.2e-34 151.0 410 29.3
CiPaw.05G130700 Carya illinoinensis HOM05D006399 ORTHO05D007988 2.2e-34 151.0 423 31.0
Cfa008944 Carpinus fangiana HOM05D006399 ORTHO05D007988 3.8e-34 150.2 395 31.4
CSS0044828 Camellia sinensis var. sinensis HOM05D006399 ORTHO05D007988 6.5e-34 149.4 374 29.7
Sabra08G0067200 Salix brachista HOM05D006399 ORTHO05D007988 6.5e-34 149.4 402 30.3
Ah.02g129470 Amaranthus hybridus HOM05D006399 ORTHO05D007988 8.4e-34 149.1 373 31.9
Dinv34129 Davidia involucrata HOM05D006399 ORTHO05D007988 1.1e-33 148.7 396 31.8
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 1.4e-33 148.3 381 32.8
Oeu005762.1 Olea europaea HOM05D006399 ORTHO05D007988 1.4e-33 148.3 437 29.7
BraA09t39516Z Brassica rapa HOM05D006399 ORTHO05D007988 7.1e-33 146.0 433 30.0
Duzib248G1019 Durio zibethinus HOM05D006399 ORTHO05D007988 9.3e-33 145.6 383 29.8
EL10Ac6g13248 Beta vulgaris HOM05D006399 ORTHO05D007988 6.1e-32 142.9 404 30.7
Gorai.013G088500 Gossypium raimondii HOM05D006399 ORTHO05D007988 6.1e-32 142.9 415 29.2
Medtr5g042100 Medicago truncatula HOM05D006399 ORTHO05D007988 6.1e-32 142.9 377 31.0
Thecc.02G341500 Theobroma cacao HOM05D006399 ORTHO05D007988 6.1e-32 142.9 410 30.2
BcaC05g26389 Brassica carinata HOM05D006399 ORTHO05D007988 1.0e-31 142.1 446 30.3
C05p24200 Brassica napus HOM05D006399 ORTHO05D007988 1.0e-31 142.1 446 30.3
BolC5t31156H Brassica oleracea HOM05D006399 ORTHO05D007988 1.0e-31 142.1 446 30.3
PGR102G2002 Punica granatum HOM05D006399 ORTHO05D007988 1.0e-31 142.1 378 30.4
Psat2g116280 Pisum sativum HOM05D006399 ORTHO05D007988 1.3e-31 141.7 375 30.9
Sp1g22040 Schrenkiella parvula HOM05D006399 ORTHO05D007988 1.3e-31 141.7 462 28.8
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 2.3e-31 141.0 387 32.6
Gohir.D13G077400 Gossypium hirsutum HOM05D006399 ORTHO05D007988 3.9e-31 140.2 401 29.7
Ca_04827_v3 Cicer arietinum L. HOM05D006399 ORTHO05D007988 5.1e-31 139.8 377 30.8
Eucgr.B03205 Eucalyptus grandis HOM05D006399 ORTHO05D007988 5.1e-31 139.8 375 30.9
Glyma.02G110300 Glycine max HOM05D006399 ORTHO05D007988 6.7e-31 139.4 383 30.5
Cpa.g.sc1.57 Carica papaya HOM05D006399 ORTHO05D007988 1.5e-30 138.3 420 29.3
VMungo1215G0113 Vigna mungo HOM05D006399 ORTHO05D007988 1.5e-30 138.3 377 30.2
DCAR_007171 Daucus carota HOM05D006399 ORTHO05D007988 2.5e-30 137.5 398 28.1
Phvul.003G046500 Phaseolus vulgaris HOM05D006399 ORTHO05D007988 2.5e-30 137.5 377 30.0
Glyma.01G052300 Glycine max HOM05D006399 ORTHO05D007988 3.3e-30 137.1 383 29.8
Lalb_Chr04g0255911 Lupinus albus HOM05D006399 ORTHO05D007988 4.3e-30 136.7 416 29.8
A09p40180 Brassica napus HOM05D006399 ORTHO05D007988 9.7e-30 135.6 398 29.4
Thhalv10007591m.g Eutrema salsugineum HOM05D006399 ORTHO05D007988 2.2e-29 134.4 467 29.6
Carub.0001s2425 Capsella rubella HOM05D006399 ORTHO05D007988 2.8e-29 134.0 389 29.8
AT1G26761 Arabidopsis thaliana HOM05D006399 ORTHO05D007988 4.8e-29 133.3 390 30.0
Aa31LG7G8360 Aethionema arabicum HOM05D006399 ORTHO05D007988 1.4e-28 131.7 431 28.1
THA.LOC104808694 Tarenaya hassleriana HOM05D006399 ORTHO05D007988 1.4e-28 131.7 392 31.9
Cre06.g273050 Chlamydomonas reinhardtii HOM05D006399 ORTHO05D007988 3.1e-28 130.6 399 30.1
Os08g0433300 Oryza sativa ssp. japonica HOM05D006399 ORTHO05D007988 6.9e-28 129.4 329 32.8
CARHR025180 Cardamine hirsuta HOM05D006399 ORTHO05D007988 9.0e-28 129.0 366 29.8
GSVIVG01005153001 Vitis vinifera HOM05D006399 ORTHO05D007988 3.4e-27 127.1 359 28.1
Zm00001eb041520 Zea mays HOM05D006399 ORTHO05D007988 1.7e-26 124.8 346 30.9
CiPaw.05G130800 Carya illinoinensis HOM05D006399 ORTHO05D007988 8.5e-26 122.5 397 30.5
SalBow2G2517 Salvia bowleyana HOM05D006399 ORTHO05D007988 1.4e-20 105.1 201 35.3
FAN22G2397 Fragaria x ananassa HOM05D006399 ORTHO05D007988 5.0e-18 96.7 309 27.8
AUR62032821 Chenopodium quinoa HOM05D006399 ORTHO05D007988 2.7e-16 90.9 177 37.9
AL1G38940 Arabidopsis lyrata HOM05D006399 ORTHO05D007988 1.1e-14 85.5 306 25.8
CDE02G1760 Ceratophyllum demersum HOM05D006399 ORTHO05D007988 2.4e-12 77.8 122 36.9
MSTRG.719 Avicennia marina HOM05D006399 ORTHO05D007988 5.3e-12 76.6 231 29.4
MBI05_g36409_MAGBIO Magnolia biondii HOM05D006399 ORTHO05D007988 4.5e-11 73.6 216 26.9
Ciclev10032022m.g Citrus clementina HOM05D006399 ORTHO05D007988 7.4e-06 56.2 122 29.5


User provided reference genes

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